Cucsa.291760 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.291760
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Mitochondrial import inner membrane translocase subunit tim23
Location	scaffold02766 : 314138 .. 314628 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCTACACGTTCCGATCACCAAGCTCTACGAGCTCCCCACCGCCCCCGAGCATCTTTTCTTCGAAGAAGCCGCCAGGCCTCACCGTTCTTGGGGCGAAAACCTCCAATATTACACCGGAATTGGCTACCTCTCCGGCGCCCTTTTTGGCGGCGCCAGGGGTTCCATTCAGGGCCTCAGGGCAGCTGAGCCTGGTGACTCTGTCAAACTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGAAACTCTCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTTCTGATGATGTTTTAAACAGTATTGTAGCTGGATTGGGGACTGGTGCTGTTTATAAGGCGGCGTCTGGGCCAAGGTCGGCTGCCATCGCCGGTGCTATTGGAGGAATTGCTGCTGCAGCTGCAGTTGCGGGTAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

mRNA sequence

ACCTACACGTTCCGATCACCAAGCTCTACGAGCTCCCCACCGCCCCCGAGCATCTTTTCTTCGAAGAAGCCGCCAGGCCTCACCGTTCTTGGGGCGAAAACCTCCAATATTACACCGGAATTGGCTACCTCTCCGGCGCCCTTTTTGGCGGCGCCAGGGGTTCCATTCAGGGCCTCAGGGCAGCTGAGCCTGGTGACTCTGTCAAACTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGAAACTCTCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTTCTGATGATGTTTTAAACAGTATTGTAGCTGGATTGGGGACTGGTGCTGTTTATAAGGCGGCGTCTGGGCCAAGGTCGGCTGCCATCGCCGGTGCTATTGGAGGAATTGCTGCTGCAGCTGCAGTTGCGGGTAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

Coding sequence (CDS)

ACCTACACGTTCCGATCACCAAGCTCTACGAGCTCCCCACCGCCCCCGAGCATCTTTTCTTCGAAGAAGCCGCCAGGCCTCACCGTTCTTGGGGCGAAAACCTCCAATATTACACCGGAATTGGCTACCTCTCCGGCGCCCTTTTTGGCGGCGCCAGGGGTTCCATTCAGGGCCTCAGGGCAGCTGAGCCTGGTGACTCTGTCAAACTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGAAACTCTCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTTCTGATGATGTTTTAAACAGTATTGTAGCTGGATTGGGGACTGGTGCTGTTTATAAGGCGGCGTCTGGGCCAAGGTCGGCTGCCATCGCCGGTGCTATTGGAGGAATTGCTGCTGCAGCTGCAGTTGCGGGTAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

Protein sequence

LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI*

Homology

[Close]

BLAST of Cucsa.291760 vs. Swiss-Prot
Match: TI233_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.8e-50
Identity = 94/163 (57.67%), Postives = 129/163 (79.14%), Query Frame = 1


Query: 1   LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 60
           +++P  KLYELPT+PE LF EEA +   +WGENL ++TG GY +G++ G  +G+I G+RA
Sbjct: 26  VNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGSVLGAFKGTIAGMRA 85

Query: 61  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLR-GSDDVLNSIVAG 120
           AE G+S+K+R NR+LNSGG + RR GN LG +GL+FA +ESGV ++R G D  L +++AG
Sbjct: 86  AERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAMESGVTYMRDGDDGSLTTVIAG 145

Query: 121 LGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           L TG +Y+AASGPRSA +AGA+GG+AA AAVAG++ VKR+VPI
Sbjct: 146 LATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFVPI 188

[Close]

BLAST of Cucsa.291760 vs. Swiss-Prot
Match: TI232_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.8e-50
Identity = 99/163 (60.74%), Postives = 124/163 (76.07%), Query Frame = 1


Query: 3   VPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLR 62
           VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG  YL G++ G + G I G++
Sbjct: 26  VPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTAYLGGSVAGASVGVITGVK 85

Query: 63  AAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAG 122
           + E GD+ KL++NR+LNS GQ GR  GN +GI+GL++AG+ESG++     DDV  S+VAG
Sbjct: 86  SFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIESGIVAATDRDDVWTSVVAG 145

Query: 123 LGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           LGTGAV +AA G RSAA+AGA+GG+AA A VAGKQ VKRYVPI
Sbjct: 146 LGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVPI 188

[Close]

BLAST of Cucsa.291760 vs. Swiss-Prot
Match: TI231_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-48
Identity = 96/162 (59.26%), Postives = 122/162 (75.31%), Query Frame = 1


Query: 3   VPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 62
           VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG GYL+G++ G + G   G+++
Sbjct: 26  VPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGTGYLAGSVAGASAGIFSGIKS 85

Query: 63  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 122
            E GD+ KL++NR+LNS GQ GR  GN +GI+GLI+AG+ESGV+ +   DDV  S+VAGL
Sbjct: 86  FENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIESGVVAVTDKDDVWTSVVAGL 145

Query: 123 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           GTGAV++AA G RSAA+AGA GGIAA A VAGKQ  KRY  I
Sbjct: 146 GTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYAHI 187

[Close]

BLAST of Cucsa.291760 vs. Swiss-Prot
Match: TIM23_SCHPO (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim23 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.1e-17
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 1


Query: 21  EEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQ 80
           +  A P R W ++L Y TG  YLSG   GG  G  +G++  +   S +LRLN +LN   +
Sbjct: 70  DSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLNEGMKKTKDITSTRLRLNGILNGVTR 129

Query: 81  LGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGA 140
            G   GNSLG+L L++ G+ S + + R      NS+ AG  TGA+YK+  G R+ AI+ +
Sbjct: 130 RGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENSVAAGALTGALYKSTRGLRAMAISSS 189

Query: 141 IGGIAAAAAVAGKQA 156
           +   AA      K++
Sbjct: 190 LVATAAGIWTLAKRS 204

[Close]

BLAST of Cucsa.291760 vs. Swiss-Prot
Match: TI17B_HUMAN (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 1


Query: 21  EEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQ 80
           EE AR    W   +    G  +  G + GG   +I+G R A  G  ++ RL    N+   
Sbjct: 2   EEYAREPCPW--RIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVG--IRHRLRGSANAVRI 61

Query: 81  LGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGA 140
              + G S  + G +F+ ++ G++ LRG +D  NSI +G  TGAV  A SGP +   +  
Sbjct: 62  RAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAM 121

Query: 141 IGGIAAA 148
           +GGI  A
Sbjct: 122 MGGILLA 124

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BLAST of Cucsa.291760 vs. TrEMBL
Match: A0A0A0M0I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690355 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.7e-84
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1


Query: 1   LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 60
           LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA
Sbjct: 22  LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 81

Query: 61  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 120
           AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL
Sbjct: 82  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 141

Query: 121 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI
Sbjct: 142 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 183

[Close]

BLAST of Cucsa.291760 vs. TrEMBL
Match: A0A059D3T9_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B021092 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 4.5e-71
Identity = 133/162 (82.10%), Postives = 151/162 (93.21%), Query Frame = 1


Query: 1   LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 60
           LHVPI  LY+LPT+PE+LF EEA +PHRSWGENLQYYTG GYL+GAL GGARG++ GLR+
Sbjct: 5   LHVPIKNLYDLPTSPEYLFHEEALKPHRSWGENLQYYTGSGYLAGALAGGARGTLDGLRS 64

Query: 61  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 120
           AEPGDS+KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLESG++H RG+DD+LNS+ AGL
Sbjct: 65  AEPGDSLKLRVNRVLNSGGQAGRRLGNSLGIVGLIFAGLESGLVHWRGTDDLLNSVAAGL 124

Query: 121 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           GTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI
Sbjct: 125 GTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 166

[Close]

BLAST of Cucsa.291760 vs. TrEMBL
Match: A0A059D310_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01693 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 6.4e-70
Identity = 131/162 (80.86%), Postives = 149/162 (91.98%), Query Frame = 1


Query: 1   LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 60
           LHVPI  LY+LPT+PE+LF EE  +PHRSWGE LQYYTG GYL+GAL GGARG++ GLR+
Sbjct: 26  LHVPIKNLYDLPTSPEYLFHEETLKPHRSWGETLQYYTGSGYLAGALAGGARGTLDGLRS 85

Query: 61  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 120
           AEPGDS+KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLESG++H RG+DD+LNS+ AGL
Sbjct: 86  AEPGDSLKLRVNRVLNSGGQTGRRLGNSLGIVGLIFAGLESGLVHWRGTDDLLNSVAAGL 145

Query: 121 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           GTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI
Sbjct: 146 GTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 187

[Close]

BLAST of Cucsa.291760 vs. TrEMBL
Match: W9QSU9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006162 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.0e-67
Identity = 127/162 (78.40%), Postives = 146/162 (90.12%), Query Frame = 1


Query: 1   LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 60
           L VPI  LY LPTA EHLF EEA++P RSWGENLQYYTG GYLSGA+ GGA+GSI+GL++
Sbjct: 23  LQVPIQNLYNLPTAHEHLFIEEASKPSRSWGENLQYYTGCGYLSGAIMGGAKGSIEGLKS 82

Query: 61  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 120
           AEPGD++KLR+NRVLNSGG +GRR GN+ G+LGLIFAGLE+GVIH RG DD+LN++VAGL
Sbjct: 83  AEPGDTLKLRVNRVLNSGGHVGRRFGNTFGVLGLIFAGLENGVIHFRGRDDLLNTVVAGL 142

Query: 121 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           GTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQ  KRYVPI
Sbjct: 143 GTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQVAKRYVPI 184

[Close]

BLAST of Cucsa.291760 vs. TrEMBL
Match: A0A0S3SQ47_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G163400 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.3e-67
Identity = 127/162 (78.40%), Postives = 145/162 (89.51%), Query Frame = 1


Query: 1   LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 60
           L+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYTG  YLSGA+ G  RG++QGLR 
Sbjct: 23  LNVPIQKLYNLPTAPEHLFSEEAARTHRSWGDNLQYYTGTAYLSGAIIGATRGTVQGLRE 82

Query: 61  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 120
           AE GDS+K+RLNRVLNSGG  GR+ GNSLG+LGLIFAGLESG+IH RG+DD++NS VAGL
Sbjct: 83  AESGDSLKIRLNRVLNSGGHAGRKLGNSLGVLGLIFAGLESGMIHARGTDDLVNSAVAGL 142

Query: 121 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           GTGA+Y+AA+GPRSAAIAGAIGGIAAAAAV GKQA+KRY+PI
Sbjct: 143 GTGALYRAAAGPRSAAIAGAIGGIAAAAAVGGKQALKRYIPI 184

[Close]

BLAST of Cucsa.291760 vs. TAIR10
Match: AT1G72750.1 (AT1G72750.1 translocase inner membrane subunit 23-2)

HSP 1 Score: 199.5 bits (506), Expect = 1.6e-51
Identity = 99/163 (60.74%), Postives = 124/163 (76.07%), Query Frame = 1


Query: 3   VPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLR 62
           VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG  YL G++ G + G I G++
Sbjct: 26  VPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTAYLGGSVAGASVGVITGVK 85

Query: 63  AAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAG 122
           + E GD+ KL++NR+LNS GQ GR  GN +GI+GL++AG+ESG++     DDV  S+VAG
Sbjct: 86  SFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIESGIVAATDRDDVWTSVVAG 145

Query: 123 LGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           LGTGAV +AA G RSAA+AGA+GG+AA A VAGKQ VKRYVPI
Sbjct: 146 LGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVPI 188

[Close]

BLAST of Cucsa.291760 vs. TAIR10
Match: AT3G04800.1 (AT3G04800.1 translocase inner membrane subunit 23-3)

HSP 1 Score: 199.5 bits (506), Expect = 1.6e-51
Identity = 94/163 (57.67%), Postives = 129/163 (79.14%), Query Frame = 1


Query: 1   LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 60
           +++P  KLYELPT+PE LF EEA +   +WGENL ++TG GY +G++ G  +G+I G+RA
Sbjct: 26  VNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGSVLGAFKGTIAGMRA 85

Query: 61  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLR-GSDDVLNSIVAG 120
           AE G+S+K+R NR+LNSGG + RR GN LG +GL+FA +ESGV ++R G D  L +++AG
Sbjct: 86  AERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAMESGVTYMRDGDDGSLTTVIAG 145

Query: 121 LGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           L TG +Y+AASGPRSA +AGA+GG+AA AAVAG++ VKR+VPI
Sbjct: 146 LATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFVPI 188

[Close]

BLAST of Cucsa.291760 vs. TAIR10
Match: AT1G17530.1 (AT1G17530.1 translocase of inner mitochondrial membrane 23)

HSP 1 Score: 194.1 bits (492), Expect = 6.6e-50
Identity = 96/162 (59.26%), Postives = 122/162 (75.31%), Query Frame = 1


Query: 3   VPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 62
           VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG GYL+G++ G + G   G+++
Sbjct: 26  VPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGTGYLAGSVAGASAGIFSGIKS 85

Query: 63  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 122
            E GD+ KL++NR+LNS GQ GR  GN +GI+GLI+AG+ESGV+ +   DDV  S+VAGL
Sbjct: 86  FENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIESGVVAVTDKDDVWTSVVAGL 145

Query: 123 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           GTGAV++AA G RSAA+AGA GGIAA A VAGKQ  KRY  I
Sbjct: 146 GTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYAHI 187

[Close]

BLAST of Cucsa.291760 vs. NCBI nr
Match: gi|449449545|ref|XP_004142525.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis sativus])

HSP 1 Score: 319.3 bits (817), Expect = 3.9e-84
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1


Query: 1   LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 60
           LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA
Sbjct: 22  LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 81

Query: 61  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 120
           AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL
Sbjct: 82  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 141

Query: 121 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI
Sbjct: 142 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 183

[Close]

BLAST of Cucsa.291760 vs. NCBI nr
Match: gi|659125510|ref|XP_008462719.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo])

HSP 1 Score: 317.0 bits (811), Expect = 1.9e-83
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 1


Query: 1   LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 60
           LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAL GGARGSIQGLRA
Sbjct: 22  LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALLGGARGSIQGLRA 81

Query: 61  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 120
           AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL
Sbjct: 82  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 141

Query: 121 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI
Sbjct: 142 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 183

[Close]

BLAST of Cucsa.291760 vs. NCBI nr
Match: gi|629120767|gb|KCW85257.1| (hypothetical protein EUGRSUZ_B021092, partial [Eucalyptus grandis])

HSP 1 Score: 275.4 bits (703), Expect = 6.4e-71
Identity = 133/162 (82.10%), Postives = 151/162 (93.21%), Query Frame = 1


Query: 1   LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 60
           LHVPI  LY+LPT+PE+LF EEA +PHRSWGENLQYYTG GYL+GAL GGARG++ GLR+
Sbjct: 5   LHVPIKNLYDLPTSPEYLFHEEALKPHRSWGENLQYYTGSGYLAGALAGGARGTLDGLRS 64

Query: 61  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 120
           AEPGDS+KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLESG++H RG+DD+LNS+ AGL
Sbjct: 65  AEPGDSLKLRVNRVLNSGGQAGRRLGNSLGIVGLIFAGLESGLVHWRGTDDLLNSVAAGL 124

Query: 121 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           GTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI
Sbjct: 125 GTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 166

[Close]

BLAST of Cucsa.291760 vs. NCBI nr
Match: gi|702269720|ref|XP_010043240.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Eucalyptus grandis])

HSP 1 Score: 275.4 bits (703), Expect = 6.4e-71
Identity = 133/162 (82.10%), Postives = 151/162 (93.21%), Query Frame = 1


Query: 1   LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 60
           LHVPI  LY+LPT+PE+LF EEA +PHRSWGENLQYYTG GYL+GAL GGARG++ GLR+
Sbjct: 26  LHVPIKNLYDLPTSPEYLFHEEALKPHRSWGENLQYYTGSGYLAGALAGGARGTLDGLRS 85

Query: 61  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 120
           AEPGDS+KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLESG++H RG+DD+LNS+ AGL
Sbjct: 86  AEPGDSLKLRVNRVLNSGGQAGRRLGNSLGIVGLIFAGLESGLVHWRGTDDLLNSVAAGL 145

Query: 121 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           GTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI
Sbjct: 146 GTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 187

[Close]

BLAST of Cucsa.291760 vs. NCBI nr
Match: gi|702265961|ref|XP_010041376.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like [Eucalyptus grandis])

HSP 1 Score: 271.6 bits (693), Expect = 9.2e-70
Identity = 131/162 (80.86%), Postives = 149/162 (91.98%), Query Frame = 1


Query: 1   LHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSIQGLRA 60
           LHVPI  LY+LPT+PE+LF EE  +PHRSWGE LQYYTG GYL+GAL GGARG++ GLR+
Sbjct: 26  LHVPIKNLYDLPTSPEYLFHEETLKPHRSWGETLQYYTGSGYLAGALAGGARGTLDGLRS 85

Query: 61  AEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGL 120
           AEPGDS+KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLESG++H RG+DD+LNS+ AGL
Sbjct: 86  AEPGDSLKLRVNRVLNSGGQTGRRLGNSLGIVGLIFAGLESGLVHWRGTDDLLNSVAAGL 145

Query: 121 GTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 163
           GTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI
Sbjct: 146 GTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 187

The following BLAST results are available for this feature:

BLAST of Cucsa.291760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI233_ARATH	2.8e-50	57.67	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
TI232_ARATH	2.8e-50	60.74	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
TI231_ARATH	1.2e-48	59.26	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
TIM23_SCHPO	4.1e-17	37.04	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]
TI17B_HUMAN	2.6e-08	33.07	Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens ...	[more]

BLAST of Cucsa.291760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0I6_CUCSA	2.7e-84	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690355 PE=4 SV=1	[more]
A0A059D3T9_EUCGR	4.5e-71	82.10	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B021092 PE=4...	[more]
A0A059D310_EUCGR	6.4e-70	80.86	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01693 PE=4 SV=1	[more]
W9QSU9_9ROSA	1.0e-67	78.40	Uncharacterized protein OS=Morus notabilis GN=L484_006162 PE=4 SV=1	[more]
A0A0S3SQ47_PHAAN	2.3e-67	78.40	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G163400 PE=...	[more]

BLAST of Cucsa.291760 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72750.1	1.6e-51	60.74	translocase inner membrane subunit 23-2	[more]
AT3G04800.1	1.6e-51	57.67	translocase inner membrane subunit 23-3	[more]
AT1G17530.1	6.6e-50	59.26	translocase of inner mitochondrial membrane 23	[more]

BLAST of Cucsa.291760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449545\|ref\|XP_004142525.1\|	3.9e-84	100.00	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
gi\|659125510\|ref\|XP_008462719.1\|	1.9e-83	99.38	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
gi\|629120767\|gb\|KCW85257.1\|	6.4e-71	82.10	hypothetical protein EUGRSUZ_B021092, partial [Eucalyptus grandis]	[more]
gi\|702269720\|ref\|XP_010043240.1\|	6.4e-71	82.10	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Euca...	[more]
gi\|702265961\|ref\|XP_010041376.1\|	9.2e-70	80.86	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016114	terpenoid biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.291760.1	Cucsa.291760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	PFAM	PF02466	Tim17	coord: 36..144 score: 2.5
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 5..162 score: 8.3E
None	No IPR available	PANTHER	PTHR15371:SF7	SUBFAMILY NOT NAMED	coord: 5..162 score: 8.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.291760	MELO3C024672	Melon (DHL92) v3.5.1	cgymeB484
Cucsa.291760	CSPI01G33690	Wild cucumber (PI 183967)	cgycpiB440
Cucsa.291760	CmaCh11G009860	Cucurbita maxima (Rimu)	cgycmaB0816
Cucsa.291760	CmaCh10G010080	Cucurbita maxima (Rimu)	cgycmaB0815
Cucsa.291760	CmoCh11G010050	Cucurbita moschata (Rifu)	cgycmoB0810
Cucsa.291760	CmoCh10G010630	Cucurbita moschata (Rifu)	cgycmoB0809
Cucsa.291760	Lsi06G008030	Bottle gourd (USVL1VR-Ls)	cgylsiB473
Cucsa.291760	Cp4.1LG05g08470	Cucurbita pepo (Zucchini)	cgycpeB0772
Cucsa.291760	Cp4.1LG04g01900	Cucurbita pepo (Zucchini)	cgycpeB0771
Cucsa.291760	MELO3C024672.2	Melon (DHL92) v3.6.1	cgymedB483
Cucsa.291760	CsaV3_1G045620	Cucumber (Chinese Long) v3	cgycucB450
Cucsa.291760	Bhi02G001024	Wax gourd	cgywgoB591
Cucsa.291760	Carg06121	Silver-seed gourd	carcgyB0025
Cucsa.291760	Carg16484	Silver-seed gourd	carcgyB1031

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.291760	Wild cucumber (PI 183967)	cgycpiB441
Cucsa.291760	Cucumber (Chinese Long) v2	cgycuB417
Cucsa.291760	Cucumber (Chinese Long) v2	cgycuB418
Cucsa.291760	Watermelon (Charleston Gray)	cgywcgB507
Cucsa.291760	Watermelon (97103) v1	cgywmB535
Cucsa.291760	Bottle gourd (USVL1VR-Ls)	cgylsiB474
Cucsa.291760	Cucumber (Chinese Long) v3	cgycucB451
Cucsa.291760	Watermelon (97103) v2	cgywmbB508