Carg06121 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06121
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mitochondrial import inner membrane translocase subunit TIM23-like protein
Location	Cucurbita_argyrosperma_scaffold_026 : 1167896 .. 1168450 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTCCTCCAACTCAGGTGATGATCGGAAGAATACCCGTTTCTACCACCCTTACCAAGACCTACACGTTCCGATCACAAAGCTCTACGAGCTCCCCACCGCTCCCGAGCATCTTTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGGGAAAATCTCCAGTACTATACTGGAATTGGCTACCTCTCTGGCGCCCTTCTCGGCGGCGCCAGAGGCTCTATTCAGGGTCTCAGAGCGGCAGAGCCTGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAATTCTGGGGGCCAGCTCGGTCGGAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTACAAGGCGGCTTCCGGGCCAAGGTCAGCCGCTATCGCCGGTGCCATTGGAGGGATTGCTGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

mRNA sequence

ATGGAAGATTCCTCCAACTCAGGTGATGATCGGAAGAATACCCGTTTCTACCACCCTTACCAAGACCTACACGTTCCGATCACAAAGCTCTACGAGCTCCCCACCGCTCCCGAGCATCTTTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGGGAAAATCTCCAGTACTATACTGGAATTGGCTACCTCTCTGGCGCCCTTCTCGGCGGCGCCAGAGGCTCTATTCAGGGTCTCAGAGCGGCAGAGCCTGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAATTCTGGGGGCCAGCTCGGTCGGAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTACAAGGCGGCTTCCGGGCCAAGGTCAGCCGCTATCGCCGGTGCCATTGGAGGGATTGCTGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

Coding sequence (CDS)

ATGGAAGATTCCTCCAACTCAGGTGATGATCGGAAGAATACCCGTTTCTACCACCCTTACCAAGACCTACACGTTCCGATCACAAAGCTCTACGAGCTCCCCACCGCTCCCGAGCATCTTTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGGGAAAATCTCCAGTACTATACTGGAATTGGCTACCTCTCTGGCGCCCTTCTCGGCGGCGCCAGAGGCTCTATTCAGGGTCTCAGAGCGGCAGAGCCTGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAATTCTGGGGGCCAGCTCGGTCGGAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTACAAGGCGGCTTCCGGGCCAAGGTCAGCCGCTATCGCCGGTGCCATTGGAGGGATTGCTGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

Protein sequence

MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI

Homology

[Close]

BLAST of Carg06121 vs. NCBI nr
Match: XP_022961272.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita moschata] >XP_023534786.1 mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.5 bits (911), Expect = 1.1e-94
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 185
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of Carg06121 vs. NCBI nr
Match: XP_022988221.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita maxima])

HSP 1 Score: 353.2 bits (905), Expect = 5.3e-94
Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSS SGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSKSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 185
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of Carg06121 vs. NCBI nr
Match: XP_023531226.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.4 bits (760), Expect = 3.4e-77
Identity = 155/184 (84.24%), Postives = 162/184 (88.04%), Query Frame = 0


Query: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           MEDS  S  DRK TRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSPQSAGDRK-TRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGAL GGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGV HLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIA              KQA KR
Sbjct: 121 LESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAXXXXXXXXXXXXXXKQAAKR 180

Query: 181 YVPI 185
           YVPI
Sbjct: 181 YVPI 183

[Close]

BLAST of Carg06121 vs. NCBI nr
Match: XP_023002094.1 (mitochondrial import inner membrane translocase subunit TIM23-3-like [Cucurbita maxima])

HSP 1 Score: 293.9 bits (751), Expect = 3.8e-76
Identity = 154/184 (83.70%), Postives = 161/184 (87.50%), Query Frame = 0


Query: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           MEDS  S   RK TRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSPQSAGYRK-TRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGAL GGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGV HLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIA              KQA KR
Sbjct: 121 LESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAXXXXXXXXXXXXXXKQAAKR 180

Query: 181 YVPI 185
           YVPI
Sbjct: 181 YVPI 183

[Close]

BLAST of Carg06121 vs. NCBI nr
Match: PON73870.1 (Mitochondrial inner membrane translocase subunit [Parasponia andersonii])

HSP 1 Score: 292.7 bits (748), Expect = 8.5e-76
Identity = 147/184 (79.89%), Postives = 165/184 (89.67%), Query Frame = 0


Query: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M DSSN   D +  R Y+PYQDL VPI  LY LPTAPEHLF EEA++PHRSWGENLQYYT
Sbjct: 1   MADSSNHNHDEQKVRLYNPYQDLQVPIRNLYNLPTAPEHLFSEEASKPHRSWGENLQYYT 60

Query: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           G GYLSGA++GGA+GS +GL+AAEPGD++KLR+NRVLNSGG +GRR GNSLG+LGLIFAG
Sbjct: 61  GCGYLSGAIIGGAKGSFEGLKAAEPGDTIKLRINRVLNSGGHVGRRYGNSLGVLGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVI LRG DD+LN++VAGLGTGALYKAA+GPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIQLRGHDDLLNTVVAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 185
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of Carg06121 vs. TAIR10
Match: AT1G72750.1 (translocase inner membrane subunit 23-2)

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53
Identity = 108/183 (59.02%), Postives = 138/183 (75.41%), Query Frame = 0


Query: 5   SNSGDDRKNTRFYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTG 64
           S+ G D +NTR Y+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG
Sbjct: 7   SDHGSD-ENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTG 66

Query: 65  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 124
             YL G++ G + G I G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GL++AG+
Sbjct: 67  TAYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGI 126

Query: 125 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 184
           ESG++     DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ VKRY
Sbjct: 127 ESGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRY 186

[Close]

BLAST of Carg06121 vs. TAIR10
Match: AT1G17530.1 (translocase of inner mitochondrial membrane 23)

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-52
Identity = 104/182 (57.14%), Postives = 135/182 (74.18%), Query Frame = 0


Query: 5   SNSGDDRKNTRFYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 64
           S+  +  +NTR YHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 65  GYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 124
           GYL+G++ G + G   G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 125 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 184
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

[Close]

BLAST of Carg06121 vs. TAIR10
Match: AT3G04800.1 (translocase inner membrane subunit 23-3)

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-52
Identity = 102/181 (56.35%), Postives = 139/181 (76.80%), Query Frame = 0


Query: 5   SNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGY 64
           S     ++  R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG GY
Sbjct: 8   STGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGY 67

Query: 65  LSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESG 124
            +G++LG  +G+I G+RAAE G+S+K+R NR+LNSGG + RR GN LG +GL+FA +ESG
Sbjct: 68  CTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAMESG 127

Query: 125 VIHLR-GTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVP 184
           V ++R G D  L +++AGL TG LY+AASGPRSA +AGA+GG+AA AAVAG++ VKR+VP
Sbjct: 128 VTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFVP 187

[Close]

BLAST of Carg06121 vs. Swiss-Prot
Match: sp|Q38820|TI232_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana OX=3702 GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.6e-52
Identity = 108/183 (59.02%), Postives = 138/183 (75.41%), Query Frame = 0


Query: 5   SNSGDDRKNTRFYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTG 64
           S+ G D +NTR Y+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG
Sbjct: 7   SDHGSD-ENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTG 66

Query: 65  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 124
             YL G++ G + G I G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GL++AG+
Sbjct: 67  TAYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGI 126

Query: 125 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 184
           ESG++     DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ VKRY
Sbjct: 127 ESGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRY 186

[Close]

BLAST of Carg06121 vs. Swiss-Prot
Match: sp|Q9LNQ1|TI231_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana OX=3702 GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.9e-51
Identity = 104/182 (57.14%), Postives = 135/182 (74.18%), Query Frame = 0


Query: 5   SNSGDDRKNTRFYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 64
           S+  +  +NTR YHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 65  GYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 124
           GYL+G++ G + G   G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 125 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 184
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

[Close]

BLAST of Carg06121 vs. Swiss-Prot
Match: sp|Q9S837|TI233_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana OX=3702 GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.9e-51
Identity = 102/181 (56.35%), Postives = 139/181 (76.80%), Query Frame = 0


Query: 5   SNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGY 64
           S     ++  R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG GY
Sbjct: 8   STGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGY 67

Query: 65  LSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESG 124
            +G++LG  +G+I G+RAAE G+S+K+R NR+LNSGG + RR GN LG +GL+FA +ESG
Sbjct: 68  CTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAMESG 127

Query: 125 VIHLR-GTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVP 184
           V ++R G D  L +++AGL TG LY+AASGPRSA +AGA+GG+AA AAVAG++ VKR+VP
Sbjct: 128 VTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFVP 187

[Close]

BLAST of Carg06121 vs. Swiss-Prot
Match: sp|Q9USM7|TIM23_SCHPO (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tim23 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-16
Identity = 59/160 (36.88%), Postives = 85/160 (53.12%), Query Frame = 0


Query: 18  HPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALLGGARGSI 77
           HP  DL  P+  L     A   L  +  A P R W ++L Y TG  YLSG  +GG  G  
Sbjct: 45  HPLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLN 104

Query: 78  QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGTDDVLNS 137
           +G++  +   S +LRLN +LN   + G   GNSLG+L L++ G+ S + + R      NS
Sbjct: 105 EGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENS 164

Query: 138 IVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQA 178
           + AG  TGALYK+  G R+ AI+ ++   AA      K++
Sbjct: 165 VAAGALTGALYKSTRGLRAMAISSSLVATAAGIWTLAKRS 204

[Close]

BLAST of Carg06121 vs. Swiss-Prot
Match: sp|P32897|TIM23_YEAST (Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TIM23 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 48  PHRSWGENLQYYTGIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRA 107
           P R W ++L Y TG  YL G  +GG  G +QGL+   P    KL+LN VLN   + G   
Sbjct: 89  PSRGWTDDLCYGTGAVYLLGLGIGGFSGMMQGLQNIPPNSPGKLQLNTVLNHITKRGPFL 148

Query: 108 GNSLGILGLIFAGLESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIA 167
           GN+ GIL L +  + S +  LRG  D   SI AG  TGAL+K++ G +    + A+  +A
Sbjct: 149 GNNAGILALSYNIINSTIDALRGKHDTAGSIGAGALTGALFKSSKGLKPMGYSSAM--VA 208

Query: 168 AAAAV 173
           AA AV
Sbjct: 209 AACAV 211

[Close]

BLAST of Carg06121 vs. TrEMBL
Match: tr|A0A2P5DKQ3|A0A2P5DKQ3_PARAD (Mitochondrial inner membrane translocase subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_054200 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 5.6e-76
Identity = 147/184 (79.89%), Postives = 165/184 (89.67%), Query Frame = 0


Query: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M DSSN   D +  R Y+PYQDL VPI  LY LPTAPEHLF EEA++PHRSWGENLQYYT
Sbjct: 1   MADSSNHNHDEQKVRLYNPYQDLQVPIRNLYNLPTAPEHLFSEEASKPHRSWGENLQYYT 60

Query: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           G GYLSGA++GGA+GS +GL+AAEPGD++KLR+NRVLNSGG +GRR GNSLG+LGLIFAG
Sbjct: 61  GCGYLSGAIIGGAKGSFEGLKAAEPGDTIKLRINRVLNSGGHVGRRYGNSLGVLGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVI LRG DD+LN++VAGLGTGALYKAA+GPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIQLRGHDDLLNTVVAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 185
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of Carg06121 vs. TrEMBL
Match: tr|A0A2P5ENG4|A0A2P5ENG4_9ROSA (Mitochondrial inner membrane translocase subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_170670 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 9.6e-76
Identity = 147/184 (79.89%), Postives = 165/184 (89.67%), Query Frame = 0


Query: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M DSSN   D +  R Y+PYQDL VPI  LY LPTAPEHLF EEA++PHRSWGENLQYYT
Sbjct: 1   MADSSNHNHDEQKGRLYNPYQDLQVPIRNLYNLPTAPEHLFIEEASKPHRSWGENLQYYT 60

Query: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           G GYLSGA++GGA+GS +GL+AAEPGD++KLR+NRVLNSGG +GRR GNSLG+LGLIFAG
Sbjct: 61  GCGYLSGAIIGGAKGSFEGLKAAEPGDTLKLRINRVLNSGGHVGRRYGNSLGVLGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVI LRG DD+LN++VAGLGTGALYKAA+GPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIQLRGHDDLLNTVVAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 185
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of Carg06121 vs. TrEMBL
Match: tr|A0A0L9VJC2|A0A0L9VJC2_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g097000 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 6.9e-74
Identity = 142/184 (77.17%), Postives = 163/184 (88.59%), Query Frame = 0


Query: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M DSS++  D+ NTR YHPY+DL+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYT
Sbjct: 1   MADSSSNSKDKNNTRLYHPYKDLNVPIQKLYNLPTAPEHLFSEEAARTHRSWGDNLQYYT 60

Query: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           G  YLSGA++G  RG++QGLR AE GDS+K+RLNRVLNSGG  GR+ GNSLG+LGLIFAG
Sbjct: 61  GTAYLSGAIIGATRGTVQGLREAESGDSLKIRLNRVLNSGGHAGRKLGNSLGVLGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESG+IH RGTDD++NS VAGLGTGALY+AA+GPRSAAIAGAIGGIAAAAAV GKQA+KR
Sbjct: 121 LESGMIHARGTDDLVNSAVAGLGTGALYRAAAGPRSAAIAGAIGGIAAAAAVGGKQALKR 180

Query: 181 YVPI 185
           Y+PI
Sbjct: 181 YIPI 184

[Close]

BLAST of Carg06121 vs. TrEMBL
Match: tr|A0A0S3SQ47|A0A0S3SQ47_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G163400 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 6.9e-74
Identity = 142/184 (77.17%), Postives = 163/184 (88.59%), Query Frame = 0


Query: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M DSS++  D+ NTR YHPY+DL+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYT
Sbjct: 1   MADSSSNSKDKNNTRLYHPYKDLNVPIQKLYNLPTAPEHLFSEEAARTHRSWGDNLQYYT 60

Query: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           G  YLSGA++G  RG++QGLR AE GDS+K+RLNRVLNSGG  GR+ GNSLG+LGLIFAG
Sbjct: 61  GTAYLSGAIIGATRGTVQGLREAESGDSLKIRLNRVLNSGGHAGRKLGNSLGVLGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESG+IH RGTDD++NS VAGLGTGALY+AA+GPRSAAIAGAIGGIAAAAAV GKQA+KR
Sbjct: 121 LESGMIHARGTDDLVNSAVAGLGTGALYRAAAGPRSAAIAGAIGGIAAAAAVGGKQALKR 180

Query: 181 YVPI 185
           Y+PI
Sbjct: 181 YIPI 184

[Close]

BLAST of Carg06121 vs. TrEMBL
Match: tr|V7BIL3|V7BIL3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G186600g PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.5e-73
Identity = 144/184 (78.26%), Postives = 162/184 (88.04%), Query Frame = 0


Query: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M DSS++  D+ NTR YHPYQDL+VPI KLY LPTAPEHLF EEAAR HRSWGENLQYYT
Sbjct: 1   MADSSSNSKDKNNTRVYHPYQDLNVPIQKLYNLPTAPEHLFPEEAARTHRSWGENLQYYT 60

Query: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           G  YLSGA++G A G++QGLR AE GDS+K+RLNRVLNSGG  GR+ GNSLG+LGLIFAG
Sbjct: 61  GTAYLSGAVIGAATGTVQGLREAESGDSLKIRLNRVLNSGGHAGRKFGNSLGVLGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESG+IH RGTDD++NS VAGLGTGALY+ A+GPRSAAIAGAIGGIAAAAAV GKQA+KR
Sbjct: 121 LESGMIHARGTDDLVNSAVAGLGTGALYRGAAGPRSAAIAGAIGGIAAAAAVGGKQALKR 180

Query: 181 YVPI 185
           YVPI
Sbjct: 181 YVPI 184

The following BLAST results are available for this feature:

BLAST of Carg06121 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961272.1	1.1e-94	100.00	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_022988221.1	5.3e-94	99.46	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_023531226.1	3.4e-77	84.24	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_023002094.1	3.8e-76	83.70	mitochondrial import inner membrane translocase subunit TIM23-3-like [Cucurbita ...	[more]
PON73870.1	8.5e-76	79.89	Mitochondrial inner membrane translocase subunit [Parasponia andersonii]	[more]

BLAST of Carg06121 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72750.1	1.5e-53	59.02	translocase inner membrane subunit 23-2	[more]
AT1G17530.1	1.6e-52	57.14	translocase of inner mitochondrial membrane 23	[more]
AT3G04800.1	1.6e-52	56.35	translocase inner membrane subunit 23-3	[more]

BLAST of Carg06121 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q38820\|TI232_ARATH	2.6e-52	59.02	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
sp\|Q9LNQ1\|TI231_ARATH	2.9e-51	57.14	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
sp\|Q9S837\|TI233_ARATH	2.9e-51	56.35	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
sp\|Q9USM7\|TIM23_SCHPO	2.3e-16	36.88	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]
sp\|P32897\|TIM23_YEAST	1.6e-12	41.60	Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces c...	[more]

BLAST of Carg06121 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5DKQ3\|A0A2P5DKQ3_PARAD	5.6e-76	79.89	Mitochondrial inner membrane translocase subunit OS=Parasponia andersonii OX=347...	[more]
tr\|A0A2P5ENG4\|A0A2P5ENG4_9ROSA	9.6e-76	79.89	Mitochondrial inner membrane translocase subunit OS=Trema orientalis OX=63057 GN...	[more]
tr\|A0A0L9VJC2\|A0A0L9VJC2_PHAAN	6.9e-74	77.17	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g097000 PE...	[more]
tr\|A0A0S3SQ47\|A0A0S3SQ47_PHAAN	6.9e-74	77.17	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G...	[more]
tr\|V7BIL3\|V7BIL3_PHAVU	1.5e-73	78.26	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G186600g PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06121-RA	Carg06121-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 58..166 e-value: 3.3E-21 score: 75.5
None	No IPR available	PANTHER	PTHR15371:SF15	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-1-RELATED	coord: 5..184
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 5..184

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06121	MELO3C024672	Melon (DHL92) v3.5.1	carmeB0020
Carg06121	CSPI01G33690	Wild cucumber (PI 183967)	carcpiB0016
Carg06121	Cucsa.291760	Cucumber (Gy14) v1	carcgyB0025
Carg06121	CmaCh10G010080	Cucurbita maxima (Rimu)	carcmaB0026
Carg06121	CmoCh10G010630	Cucurbita moschata (Rifu)	carcmoB0027
Carg06121	Lsi06G008030	Bottle gourd (USVL1VR-Ls)	carlsiB022
Carg06121	Cp4.1LG05g08470	Cucurbita pepo (Zucchini)	carcpeB0038
Carg06121	CsGy1G032290	Cucumber (Gy14) v2	carcgybB0015
Carg06121	MELO3C024672.2	Melon (DHL92) v3.6.1	carmedB0021
Carg06121	CsaV3_1G045620	Cucumber (Chinese Long) v3	carcucB0016
Carg06121	Bhi02G001024	Wax gourd	carwgoB0028

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06121	Cucumber (Chinese Long) v2	carcuB0016