Cp4.1LG04g01900 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g01900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Mitochondrial import inner membrane translocase subunit tim23
Location	Cp4.1LG04 : 212033 .. 212584 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTCCCCGCAATCAGCCGGTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTCCCGATCACCAAGCTTTACGAGCTTCCCACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCCTTTTTGGCGGCGCCAGGGGATCTCTCCAGGGCATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAGGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTACTCATTTGAGAGGCTCTGATGATGTTTTGAATAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG

mRNA sequence

ATGGAAGATTCCCCGCAATCAGCCGGTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTCCCGATCACCAAGCTTTACGAGCTTCCCACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCCTTTTTGGCGGCGCCAGGGGATCTCTCCAGGGCATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAGGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTACTCATTTGAGAGGCTCTGATGATGTTTTGAATAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG

Coding sequence (CDS)

ATGGAAGATTCCCCGCAATCAGCCGGTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTCCCGATCACCAAGCTTTACGAGCTTCCCACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCCTTTTTGGCGGCGCCAGGGGATCTCTCCAGGGCATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAGGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTACTCATTTGAGAGGCTCTGATGATGTTTTGAATAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG

Protein sequence

MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI

Homology

[Close]

BLAST of Cp4.1LG04g01900 vs. Swiss-Prot
Match: TI232_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-51
Identity = 104/177 (58.76%), Postives = 131/177 (74.01%), Query Frame = 1


Query: 10  DRKTRFYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSG 69
           D  TR Y+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG  YL G
Sbjct: 12  DENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTAYLGG 71

Query: 70  ALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTH 129
           ++ G + G + G+++ E GDT KL++NR+LNS GQ GR  GN +GI+GL++AG+ESG+  
Sbjct: 72  SVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIESGIVA 131

Query: 130 LRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
               DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ  KRYVPI
Sbjct: 132 ATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVPI 188

[Close]

BLAST of Cp4.1LG04g01900 vs. Swiss-Prot
Match: TI231_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-51
Identity = 106/182 (58.24%), Postives = 131/182 (71.98%), Query Frame = 1


Query: 4   SPQSAGDRKTRFYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 63
           S     D  TR YHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLE 123
           GYL+G++ G + G   GI++ E GDT KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYV 183
           SGV  +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

[Close]

BLAST of Cp4.1LG04g01900 vs. Swiss-Prot
Match: TI233_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.7e-51
Identity = 101/184 (54.89%), Postives = 139/184 (75.54%), Query Frame = 1


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S      +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
            GY +G++ G  +G++ G+RAAE G+++K+R NR+LNSGG V RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVTHLR-GSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKR 180
           ESGVT++R G D  L +++AGL TG +Y+AASGPRSA +AGA+GG+AA AAVAG++  KR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of Cp4.1LG04g01900 vs. Swiss-Prot
Match: TIM23_SCHPO (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim23 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-15
Identity = 57/160 (35.62%), Postives = 84/160 (52.50%), Query Frame = 1


Query: 17  HPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSL 76
           HP  DL  P+  L     A   L  +  A P R W ++L Y TG  YLSG   GG  G  
Sbjct: 45  HPLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLN 104

Query: 77  QGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRGSDDVLNS 136
           +G++  +   + +LRLN +LN   + G   GNSLG+L L++ G+ S + + R      NS
Sbjct: 105 EGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENS 164

Query: 137 IVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQA 177
           + AG  TGA+YK+  G R+ AI+ ++   AA      K++
Sbjct: 165 VAAGALTGALYKSTRGLRAMAISSSLVATAAGIWTLAKRS 204

[Close]

BLAST of Cp4.1LG04g01900 vs. TrEMBL
Match: A0A0A0M0I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690355 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.6e-88
Identity = 169/183 (92.35%), Postives = 178/183 (97.27%), Query Frame = 1


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S  DRK+RFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGALFGGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180
           ESGV HLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Cp4.1LG04g01900 vs. TrEMBL
Match: A0A059D310_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01693 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.9e-72
Identity = 141/181 (77.90%), Postives = 161/181 (88.95%), Query Frame = 1


Query: 7   SAGD----RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIG 66
           S+GD    RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EE  +PHRSWGE LQYYTG G
Sbjct: 7   SSGDPEEGRKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEETLKPHRSWGETLQYYTGSG 66

Query: 67  YLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLES 126
           YL+GAL GGARG+L G+R+AEPGD++KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLES
Sbjct: 67  YLAGALAGGARGTLDGLRSAEPGDSLKLRVNRVLNSGGQTGRRLGNSLGIVGLIFAGLES 126

Query: 127 GVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVP 184
           G+ H RG+DD+LNS+ AGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQA KRYVP
Sbjct: 127 GLVHWRGTDDLLNSVAAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVP 186

[Close]

BLAST of Cp4.1LG04g01900 vs. TrEMBL
Match: W9QSU9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006162 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.5e-70
Identity = 138/184 (75.00%), Postives = 160/184 (86.96%), Query Frame = 1


Query: 1   MEDSPQSAGDRK-TRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M D  +S  D + TR Y+PYQDL VPI  LY LPTA EHLF EEA++P RSWGENLQYYT
Sbjct: 1   MADFTKSNNDEQSTRLYNPYQDLQVPIQNLYNLPTAHEHLFIEEASKPSRSWGENLQYYT 60

Query: 61  GIGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAG 120
           G GYLSGA+ GGA+GS++G+++AEPGDT+KLR+NRVLNSGG VGRR GN+ G+LGLIFAG
Sbjct: 61  GCGYLSGAIMGGAKGSIEGLKSAEPGDTLKLRVNRVLNSGGHVGRRFGNTFGVLGLIFAG 120

Query: 121 LESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKR 180
           LE+GV H RG DD+LN++VAGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQ AKR
Sbjct: 121 LENGVIHFRGRDDLLNTVVAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQVAKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of Cp4.1LG04g01900 vs. TrEMBL
Match: I1NIP2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G223900 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 4.2e-70
Identity = 139/184 (75.54%), Postives = 161/184 (87.50%), Query Frame = 1


Query: 1   MEDSPQSAGDR-KTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M DS  ++ D   TR YHPYQDL+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYT
Sbjct: 1   MADSSSNSKDHHNTRVYHPYQDLNVPIQKLYNLPTAPEHLFPEEAARTHRSWGDNLQYYT 60

Query: 61  GIGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAG 120
           G GYL+GA+ G ARG++QG+R AE  D++K+RLNRVLNSGG  GRR GNSLG++GLIFAG
Sbjct: 61  GSGYLAGAITGAARGTVQGLREAESADSLKIRLNRVLNSGGLAGRRLGNSLGVVGLIFAG 120

Query: 121 LESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKR 180
           LESG+THLRG+DD++NS VAGLGTGA+Y+AA+GP+SAAIAGAIGGIAAAAAVAGKQA KR
Sbjct: 121 LESGMTHLRGTDDLVNSAVAGLGTGALYRAAAGPQSAAIAGAIGGIAAAAAVAGKQALKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of Cp4.1LG04g01900 vs. TrEMBL
Match: I1LBK4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G161100 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.5e-70
Identity = 138/184 (75.00%), Postives = 161/184 (87.50%), Query Frame = 1


Query: 1   MEDSPQSAGDR-KTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M DS  ++ D   TR YHPYQDL+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYT
Sbjct: 1   MADSSSNSKDHHNTRVYHPYQDLNVPIQKLYNLPTAPEHLFPEEAARTHRSWGDNLQYYT 60

Query: 61  GIGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAG 120
           G GYL+GAL G ARG++QG+R AE GD++K+RLNRVLNSGG  GRR GNSLG++GLIFAG
Sbjct: 61  GSGYLAGALIGAARGTVQGLREAESGDSLKIRLNRVLNSGGHAGRRLGNSLGVVGLIFAG 120

Query: 121 LESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKR 180
           LESG+T+LRG+DD++NS VAGLGTG +++AA+GPRSAAIAGAIGGIAAAAAV+GKQA KR
Sbjct: 121 LESGMTYLRGTDDLVNSAVAGLGTGTLFRAAAGPRSAAIAGAIGGIAAAAAVSGKQALKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of Cp4.1LG04g01900 vs. TAIR10
Match: AT1G17530.1 (AT1G17530.1 translocase of inner mitochondrial membrane 23)

HSP 1 Score: 203.8 bits (517), Expect = 9.4e-53
Identity = 106/182 (58.24%), Postives = 131/182 (71.98%), Query Frame = 1


Query: 4   SPQSAGDRKTRFYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 63
           S     D  TR YHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLE 123
           GYL+G++ G + G   GI++ E GDT KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYV 183
           SGV  +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

[Close]

BLAST of Cp4.1LG04g01900 vs. TAIR10
Match: AT1G72750.1 (AT1G72750.1 translocase inner membrane subunit 23-2)

HSP 1 Score: 203.8 bits (517), Expect = 9.4e-53
Identity = 104/177 (58.76%), Postives = 131/177 (74.01%), Query Frame = 1


Query: 10  DRKTRFYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSG 69
           D  TR Y+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG  YL G
Sbjct: 12  DENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTAYLGG 71

Query: 70  ALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTH 129
           ++ G + G + G+++ E GDT KL++NR+LNS GQ GR  GN +GI+GL++AG+ESG+  
Sbjct: 72  SVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIESGIVA 131

Query: 130 LRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
               DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ  KRYVPI
Sbjct: 132 ATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVPI 188

[Close]

BLAST of Cp4.1LG04g01900 vs. TAIR10
Match: AT3G04800.1 (AT3G04800.1 translocase inner membrane subunit 23-3)

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-52
Identity = 101/184 (54.89%), Postives = 139/184 (75.54%), Query Frame = 1


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S      +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
            GY +G++ G  +G++ G+RAAE G+++K+R NR+LNSGG V RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVTHLR-GSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKR 180
           ESGVT++R G D  L +++AGL TG +Y+AASGPRSA +AGA+GG+AA AAVAG++  KR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of Cp4.1LG04g01900 vs. NCBI nr
Match: gi|449449545|ref|XP_004142525.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis sativus])

HSP 1 Score: 332.8 bits (852), Expect = 3.8e-88
Identity = 169/183 (92.35%), Postives = 178/183 (97.27%), Query Frame = 1


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S  DRK+RFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGALFGGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180
           ESGV HLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Cp4.1LG04g01900 vs. NCBI nr
Match: gi|659125510|ref|XP_008462719.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo])

HSP 1 Score: 332.0 bits (850), Expect = 6.5e-88
Identity = 169/183 (92.35%), Postives = 177/183 (96.72%), Query Frame = 1


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S  DRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGAL GGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180
           ESGV HLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Cp4.1LG04g01900 vs. NCBI nr
Match: gi|702269720|ref|XP_010043240.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Eucalyptus grandis])

HSP 1 Score: 282.3 bits (721), Expect = 5.9e-73
Identity = 143/181 (79.01%), Postives = 163/181 (90.06%), Query Frame = 1


Query: 7   SAGD----RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIG 66
           S+GD    RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EEA +PHRSWGENLQYYTG G
Sbjct: 7   SSGDPEEVRKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEEALKPHRSWGENLQYYTGSG 66

Query: 67  YLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLES 126
           YL+GAL GGARG+L G+R+AEPGD++KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLES
Sbjct: 67  YLAGALAGGARGTLDGLRSAEPGDSLKLRVNRVLNSGGQAGRRLGNSLGIVGLIFAGLES 126

Query: 127 GVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVP 184
           G+ H RG+DD+LNS+ AGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQA KRYVP
Sbjct: 127 GLVHWRGTDDLLNSVAAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVP 186

[Close]

BLAST of Cp4.1LG04g01900 vs. NCBI nr
Match: gi|702265961|ref|XP_010041376.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like [Eucalyptus grandis])

HSP 1 Score: 278.5 bits (711), Expect = 8.5e-72
Identity = 141/181 (77.90%), Postives = 161/181 (88.95%), Query Frame = 1


Query: 7   SAGD----RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIG 66
           S+GD    RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EE  +PHRSWGE LQYYTG G
Sbjct: 7   SSGDPEEGRKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEETLKPHRSWGETLQYYTGSG 66

Query: 67  YLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLES 126
           YL+GAL GGARG+L G+R+AEPGD++KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLES
Sbjct: 67  YLAGALAGGARGTLDGLRSAEPGDSLKLRVNRVLNSGGQTGRRLGNSLGIVGLIFAGLES 126

Query: 127 GVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVP 184
           G+ H RG+DD+LNS+ AGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQA KRYVP
Sbjct: 127 GLVHWRGTDDLLNSVAAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVP 186

[Close]

BLAST of Cp4.1LG04g01900 vs. NCBI nr
Match: gi|703076108|ref|XP_010090256.1| (hypothetical protein L484_006162 [Morus notabilis])

HSP 1 Score: 273.9 bits (699), Expect = 2.1e-70
Identity = 138/184 (75.00%), Postives = 160/184 (86.96%), Query Frame = 1


Query: 1   MEDSPQSAGDRK-TRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M D  +S  D + TR Y+PYQDL VPI  LY LPTA EHLF EEA++P RSWGENLQYYT
Sbjct: 1   MADFTKSNNDEQSTRLYNPYQDLQVPIQNLYNLPTAHEHLFIEEASKPSRSWGENLQYYT 60

Query: 61  GIGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAG 120
           G GYLSGA+ GGA+GS++G+++AEPGDT+KLR+NRVLNSGG VGRR GN+ G+LGLIFAG
Sbjct: 61  GCGYLSGAIMGGAKGSIEGLKSAEPGDTLKLRVNRVLNSGGHVGRRFGNTFGVLGLIFAG 120

Query: 121 LESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKR 180
           LE+GV H RG DD+LN++VAGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQ AKR
Sbjct: 121 LENGVIHFRGRDDLLNTVVAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQVAKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g01900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI232_ARATH	1.7e-51	58.76	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
TI231_ARATH	1.7e-51	58.24	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
TI233_ARATH	3.7e-51	54.89	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
TIM23_SCHPO	1.9e-15	35.63	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]

BLAST of Cp4.1LG04g01900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0I6_CUCSA	2.6e-88	92.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690355 PE=4 SV=1	[more]
A0A059D310_EUCGR	5.9e-72	77.90	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01693 PE=4 SV=1	[more]
W9QSU9_9ROSA	1.5e-70	75.00	Uncharacterized protein OS=Morus notabilis GN=L484_006162 PE=4 SV=1	[more]
I1NIP2_SOYBN	4.2e-70	75.54	Uncharacterized protein OS=Glycine max GN=GLYMA_20G223900 PE=4 SV=1	[more]
I1LBK4_SOYBN	5.5e-70	75.00	Uncharacterized protein OS=Glycine max GN=GLYMA_10G161100 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g01900 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17530.1	9.4e-53	58.24	translocase of inner mitochondrial membrane 23	[more]
AT1G72750.1	9.4e-53	58.76	translocase inner membrane subunit 23-2	[more]
AT3G04800.1	2.1e-52	54.89	translocase inner membrane subunit 23-3	[more]

BLAST of Cp4.1LG04g01900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449545\|ref\|XP_004142525.1\|	3.8e-88	92.35	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
gi\|659125510\|ref\|XP_008462719.1\|	6.5e-88	92.35	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
gi\|702269720\|ref\|XP_010043240.1\|	5.9e-73	79.01	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Euca...	[more]
gi\|702265961\|ref\|XP_010041376.1\|	8.5e-72	77.90	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like ...	[more]
gi\|703076108\|ref\|XP_010090256.1\|	2.1e-70	75.00	hypothetical protein L484_006162 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016114	terpenoid biosynthetic process
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005744	mitochondrial inner membrane presequence translocase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g01900.1	Cp4.1LG04g01900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	PFAM	PF02466	Tim17	coord: 57..165 score: 1.9
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 1..183 score: 1.3E
None	No IPR available	PANTHER	PTHR15371:SF7	SUBFAMILY NOT NAMED	coord: 1..183 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g01900	Cucsa.291760	Cucumber (Gy14) v1	cgycpeB0771
Cp4.1LG04g01900	CmaCh10G010080	Cucurbita maxima (Rimu)	cmacpeB095
Cp4.1LG04g01900	CmaCh11G009860	Cucurbita maxima (Rimu)	cmacpeB147
Cp4.1LG04g01900	CmoCh11G010050	Cucurbita moschata (Rifu)	cmocpeB127
Cp4.1LG04g01900	CmoCh10G010630	Cucurbita moschata (Rifu)	cmocpeB071
Cp4.1LG04g01900	MELO3C024672	Melon (DHL92) v3.5.1	cpemeB617
Cp4.1LG04g01900	ClCG06G009180	Watermelon (Charleston Gray)	cpewcgB620
Cp4.1LG04g01900	CSPI01G33690	Wild cucumber (PI 183967)	cpecpiB644
Cp4.1LG04g01900	Lsi06G008030	Bottle gourd (USVL1VR-Ls)	cpelsiB559
Cp4.1LG04g01900	MELO3C024672.2	Melon (DHL92) v3.6.1	cpemedB729
Cp4.1LG04g01900	CsaV3_1G045620	Cucumber (Chinese Long) v3	cpecucB0799
Cp4.1LG04g01900	Bhi02G001024	Wax gourd	cpewgoB0899
Cp4.1LG04g01900	CsGy1G032290	Cucumber (Gy14) v2	cgybcpeB112
Cp4.1LG04g01900	Carg16484	Silver-seed gourd	carcpeB1261

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG04g01900	Cp4.1LG05g08470	Cucurbita pepo (Zucchini)	cpecpeB494

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g01900	Cucurbita pepo (Zucchini)	cpecpeB504
Cp4.1LG04g01900	Cucumber (Chinese Long) v2	cpecuB639