Lsi05G022010 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G022010
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Zinc ion binding protein
Location	chr05 : 28577295 .. 28577966 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCGTAAGACCGTCTTTTGTTTTAATTTATTAGGCTATGATACTATGTTAGATGTTGTATTATCTTAAACTTACATATTTTGGTAGTTCAGTTACTGCAGCAACTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTACTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAGGATGTCATGTGTTAGAAACTTTTCCATCAACCCCCAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATTTACATATATGCACCTATATCATCTTAATTAATATAATCCTGTATGTGTATGTCGCCTTTCAAAATTAAATTATCCACAACATAAGATGGTTCTCTGTATTTTATAATCAAGGCATTTTCAATTACTTCAACCTTTTTAATGCATTCGTTTGCTCTTGAAATAATCTGAATATATATTCAAC

mRNA sequence

ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCTTACTGCAGCAACTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTACTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAGGATGTCATGTGTTAGAAACTTTTCCATCAACCCCCAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATTTACATATATGCACCTATATCATCTTAATTAATATAATCCTGTATGTGTATGTCGCCTTTCAAAATTAAATTATCCACAACATAAGATGGTTCTCTGTATTTTATAATCAAGGCATTTTCAATTACTTCAACCTTTTTAATGCATTCGTTTGCTCTTGAAATAATCTGAATATATATTCAAC

Coding sequence (CDS)

ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCTTACTGCAGCAACTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTACTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAGGATGTCATGTGTTAG

Protein sequence

MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC

Homology

[Close]

BLAST of Lsi05G022010 vs. TrEMBL
Match: A0A0A0L5P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-42
Identity = 86/114 (75.44%), Postives = 93/114 (81.58%), Query Frame = 1


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPAKLFRC +CSNRFQHSYCSNYYCGESGDA ++VCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA A+      T S K +KIT++    RSS  GLPS RPAPRRYKLLKDVMC
Sbjct: 61  CRPAFAS------TTSQKSNKITER----RSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of Lsi05G022010 vs. TrEMBL
Match: A0A022RQV6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016574mg PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.6e-25
Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = 1


Query: 5   RPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGD-AIVQVCDWCRSEQRTHRP 64
           R +CCLCGDVGF  KLFRC  C  RFQHSYCSNY C E  + A++QVCDWCR ++R +  
Sbjct: 5   RTVCCLCGDVGFSDKLFRCSKCLTRFQHSYCSNYNCREYAEAAVLQVCDWCRCDEREYNI 64

Query: 65  ASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
           +S+  NN+     +   KI  Q T  +S+G  LPS RP+ RRYKLLKDVMC
Sbjct: 65  SSSKNNNSHIRSPYSGEKIKQQ-TPEKSTGK-LPSPRPSARRYKLLKDVMC 113

[Close]

BLAST of Lsi05G022010 vs. TrEMBL
Match: A0A061DUE3_THECC (Late cornified envelope protein 1E OS=Theobroma cacao GN=TCM_005618 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 59/119 (49.58%), Postives = 77/119 (64.71%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPAS- 66
           +CC+CGDVGFP KLFRC  C +RFQHSYCSNYY  E  + I ++CDWC+SE+R+ R  S 
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYY-SELAEPI-ELCDWCQSEERSSRHGSS 66

Query: 67  ---ATANNNSGTMSHKDHKITDQITQ-------IRSSGAGLPSSRPAPRRYKLLKDVMC 115
              ++  N +G  +  ++  TD+I Q        +   +G PS RP  RRYKLLKDVMC
Sbjct: 67  SKKSSTGNETGITNRSEYSGTDKIKQQDRDESAEKGKSSGTPSPRPTTRRYKLLKDVMC 123

[Close]

BLAST of Lsi05G022010 vs. TrEMBL
Match: A9PG29_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05730g PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 65/127 (51.18%), Postives = 79/127 (62.20%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASA 66
           +CC+CGDVGFP KLFRC  C NRFQH YCSNYY GE  + I Q CDWC+SE+R  R  ++
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRNRFQHLYCSNYY-GEFSEPIEQ-CDWCQSEERNARHGNS 66

Query: 67  T----ANNNSGTMSHK------DHKI---------TDQITQIRSSGAGLPSSRPAPRRYK 115
           +    A ++SGT+  K      DHKI         T    Q   + +G+PS RP  RRYK
Sbjct: 67  SKKSGAEHDSGTLVTKRSEYSGDHKIKQHDREENSTTSSDQKGKNPSGIPSPRPTTRRYK 126

[Close]

BLAST of Lsi05G022010 vs. TrEMBL
Match: D7LRR6_ARALL (Zinc ion binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_907580 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.2e-23
Identity = 64/130 (49.23%), Postives = 78/130 (60.00%), Query Frame = 1


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           +DL R +CC+CGDVGF  KLF C  C NRFQHSYCS+YY  E  D I ++CDWC+ E ++
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYY-KEQADPI-KICDWCQCEAKS 61

Query: 61  HRPASATANNNSGTMSHKD------HKITDQ-ITQIRSSG---------AGLPSSRPAPR 115
              A   AN  S   S++       H+I  Q I Q  SS          +G+PS RPA R
Sbjct: 62  RTGAKHGANGGSSKRSYRSEYSSAHHQIKQQEIHQTTSSSIPPAAEKGKSGVPSPRPATR 121

[Close]

BLAST of Lsi05G022010 vs. TAIR10
Match: AT3G60520.1 (AT3G60520.1 unknown protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.0e-25
Identity = 63/130 (48.46%), Postives = 76/130 (58.46%), Query Frame = 1


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           +DL R +CC+CGDVGF  KLF C  C NRFQHSYCS+YY  E  D I ++CDWC+ E ++
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYY-KEQADPI-KICDWCQCEAKS 61

Query: 61  HRPASATANNNSGTMSHKD------HKITDQ-ITQIRSSG---------AGLPSSRPAPR 115
              A    N  S   S++       H+I  Q I Q  SS           G+PS RPA R
Sbjct: 62  RTGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATR 121

[Close]

BLAST of Lsi05G022010 vs. TAIR10
Match: AT1G02070.1 (AT1G02070.1 unknown protein)

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-20
Identity = 51/130 (39.23%), Postives = 70/130 (53.85%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQR------- 66
           +CC+CGDVGF  KLF C  C  RFQHSYCSNYY G+  +   ++CDWCRS+ R       
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYY-GQFAEP-TEICDWCRSDDRKLSNVAR 63

Query: 67  -----THRPASATANNNSGT----------MSHKDHKITDQITQIRSSGAGLPSSRPAPR 115
                + +P+S+    N  +          + H +++       +   G G+ S + A R
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 123

[Close]

BLAST of Lsi05G022010 vs. NCBI nr
Match: gi|659074774|ref|XP_008437789.1| (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 8.8e-43
Identity = 87/114 (76.32%), Postives = 92/114 (80.70%), Query Frame = 1


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA+        T S KD K    IT+IRSS AGLPS RPAPRRYKLLKDVMC
Sbjct: 101 RRPAAFAT-----TTSQKDRK----ITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of Lsi05G022010 vs. NCBI nr
Match: gi|449433002|ref|XP_004134287.1| (PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 2.0e-42
Identity = 86/114 (75.44%), Postives = 93/114 (81.58%), Query Frame = 1


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPAKLFRC +CSNRFQHSYCSNYYCGESGDA ++VCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA A+      T S K +KIT++    RSS  GLPS RPAPRRYKLLKDVMC
Sbjct: 61  CRPAFAS------TTSQKSNKITER----RSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of Lsi05G022010 vs. NCBI nr
Match: gi|848861144|ref|XP_012831396.1| (PREDICTED: uncharacterized protein LOC105952400 [Erythranthe guttata])

HSP 1 Score: 122.9 bits (307), Expect = 3.7e-25
Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = 1


Query: 5   RPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGD-AIVQVCDWCRSEQRTHRP 64
           R +CCLCGDVGF  KLFRC  C  RFQHSYCSNY C E  + A++QVCDWCR ++R +  
Sbjct: 5   RTVCCLCGDVGFSDKLFRCSKCLTRFQHSYCSNYNCREYAEAAVLQVCDWCRCDEREYNI 64

Query: 65  ASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
           +S+  NN+     +   KI  Q T  +S+G  LPS RP+ RRYKLLKDVMC
Sbjct: 65  SSSKNNNSHIRSPYSGEKIKQQ-TPEKSTGK-LPSPRPSARRYKLLKDVMC 113

[Close]

BLAST of Lsi05G022010 vs. NCBI nr
Match: gi|743788321|ref|XP_011033224.1| (PREDICTED: uncharacterized protein LOC105131778 [Populus euphratica])

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 65/127 (51.18%), Postives = 79/127 (62.20%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASA 66
           +CC+CGDVGFP KLFRC  C NRFQH YCSNYY GE  + I Q CDWC+SE+R  R  ++
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRNRFQHLYCSNYY-GEFSEPIEQ-CDWCQSEERNARHGNS 66

Query: 67  T----ANNNSGTMSHK------DHKI---------TDQITQIRSSGAGLPSSRPAPRRYK 115
           +    A ++SGT+  K      DHKI         T    Q   + +G+PS RP  RRYK
Sbjct: 67  SKKSVAEHDSGTLVTKRSEYSGDHKIKQHDREENSTTSSDQKGKNPSGIPSPRPTTRRYK 126

[Close]

BLAST of Lsi05G022010 vs. NCBI nr
Match: gi|566202783|ref|XP_006375260.1| (hypothetical protein POPTR_0014s05730g [Populus trichocarpa])

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 65/127 (51.18%), Postives = 79/127 (62.20%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASA 66
           +CC+CGDVGFP KLFRC  C NRFQH YCSNYY GE  + I Q CDWC+SE+R  R  ++
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRNRFQHLYCSNYY-GEFSEPIEQ-CDWCQSEERNARHGNS 66

Query: 67  T----ANNNSGTMSHK------DHKI---------TDQITQIRSSGAGLPSSRPAPRRYK 115
           +    A ++SGT+  K      DHKI         T    Q   + +G+PS RP  RRYK
Sbjct: 67  SKKSGAEHDSGTLVTKRSEYSGDHKIKQHDREENSTTSSDQKGKNPSGIPSPRPTTRRYK 126

The following BLAST results are available for this feature:

BLAST of Lsi05G022010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G022010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5P1_CUCSA	1.4e-42	75.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1	[more]
A0A022RQV6_ERYGU	2.6e-25	55.86	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016574mg PE=4 SV=1	[more]
A0A061DUE3_THECC	1.4e-23	49.58	Late cornified envelope protein 1E OS=Theobroma cacao GN=TCM_005618 PE=4 SV=1	[more]
A9PG29_POPTR	1.4e-23	51.18	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05730g PE=2 SV=1	[more]
D7LRR6_ARALL	9.2e-23	49.23	Zinc ion binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_90758...	[more]

BLAST of Lsi05G022010 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60520.1	1.0e-25	48.46	unknown protein	[more]
AT1G02070.1	2.9e-20	39.23	unknown protein	[more]

BLAST of Lsi05G022010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074774\|ref\|XP_008437789.1\|	8.8e-43	76.32	PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]	[more]
gi\|449433002\|ref\|XP_004134287.1\|	2.0e-42	75.44	PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus]	[more]
gi\|848861144\|ref\|XP_012831396.1\|	3.7e-25	55.86	PREDICTED: uncharacterized protein LOC105952400 [Erythranthe guttata]	[more]
gi\|743788321\|ref\|XP_011033224.1\|	2.0e-23	51.18	PREDICTED: uncharacterized protein LOC105131778 [Populus euphratica]	[more]
gi\|566202783\|ref\|XP_006375260.1\|	2.0e-23	51.18	hypothetical protein POPTR_0014s05730g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G022010.1	Lsi05G022010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 112..114 scor
None	No IPR available	PANTHER	PTHR33779	FAMILY NOT NAMED	coord: 8..114 score: 1.2
None	No IPR available	PANTHER	PTHR33779:SF2	SUBFAMILY NOT NAMED	coord: 8..114 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G022010	Csa3G117940	Cucumber (Chinese Long) v2	culsiB209
Lsi05G022010	CSPI03G07300	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G022010	Cucsa.259820	Cucumber (Gy14) v1	cgylsiB415
Lsi05G022010	CmaCh06G009630	Cucurbita maxima (Rimu)	cmalsiB766
Lsi05G022010	CmoCh06G009850	Cucurbita moschata (Rifu)	cmolsiB758
Lsi05G022010	CmoCh14G022240	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G022010	MELO3C005964	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G022010	ClCG05G000270	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G022010	MELO3C005964.2	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G022010	Cp4.1LG03g15810	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G022010	CsGy3G007440	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G022010	Carg24170	Silver-seed gourd	carlsiB088
Lsi05G022010	Carg17678	Silver-seed gourd	carlsiB119
Lsi05G022010	CsaV3_3G007420	Cucumber (Chinese Long) v3	cuclsiB228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G022010	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G022010	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G022010	Watermelon (97103) v1	lsiwmB365
Lsi05G022010	Watermelon (97103) v2	lsiwmbB333
Lsi05G022010	Wax gourd	lsiwgoB433