Cucsa.259820 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.259820
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Potassium voltage-gated channel subfamily C member 4
Location	scaffold02229 : 6157001 .. 6157423 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGAATCCCCCTCTCTGTTGTCTATGCGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCACCAATTGCTCCAACCGATTTCAGCACTCGTAAGACTCTCTCTCTCACACACACATATGCACACACCCTCTTCTTTATATATATTCTTTCGCTTTTGATTTCATCAACAACTCTCTAATAGCCTGTCAATTTTTCAGTTACTGTAGTAACTACTACTGCGGGGAATCGGGTGATGCAACAATTCGAGTATGTGATTGGTGCCGAAGTGAACAAAGAACCTGCCGTCCTGCCTTTGCAAGTACAACATCCCAAAAGAGTAACAAAATTACAGAAAGAAGAAGCTCTGCGGTGGGACTGCCTTCCCCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAAGATGTCATGTGTTAG

mRNA sequence

ATGGATTTGAATCCCCCTCTCTGTTGTCTATGCGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCACCAATTGCTCCAACCGATTTCAGCACTCTTACTGTAGTAACTACTACTGCGGGGAATCGGGTGATGCAACAATTCGAGTATGTGATTGGTGCCGAAGTGAACAAAGAACCTGCCGTCCTGCCTTTGCAAGTACAACATCCCAAAAGAGTAACAAAATTACAGAAAGAAGAAGCTCTGCGGTGGGACTGCCTTCCCCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAAGATGTCATGTGTTAG

Coding sequence (CDS)

ATGGATTTGAATCCCCCTCTCTGTTGTCTATGCGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCACCAATTGCTCCAACCGATTTCAGCACTCTTACTGTAGTAACTACTACTGCGGGGAATCGGGTGATGCAACAATTCGAGTATGTGATTGGTGCCGAAGTGAACAAAGAACCTGCCGTCCTGCCTTTGCAAGTACAACATCCCAAAAGAGTAACAAAATTACAGAAAGAAGAAGCTCTGCGGTGGGACTGCCTTCCCCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAAGATGTCATGTGTTAG

Protein sequence

MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC*

Homology

[Close]

BLAST of Cucsa.259820 vs. TrEMBL
Match: A0A0A0L5P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.1e-57
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 61  CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
           CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC
Sbjct: 61  CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of Cucsa.259820 vs. TrEMBL
Match: A0A061DUE3_THECC (Late cornified envelope protein 1E OS=Theobroma cacao GN=TCM_005618 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.5e-23
Identity = 58/119 (48.74%), Postives = 70/119 (58.82%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPAFA 66
           +CC+CGDVGFP KLFRC  C +RFQHSYCSNYY   +    I +CDWC+SE+R+ R   +
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSELA--EPIELCDWCQSEERSSRHGSS 66

Query: 67  STTSQKSNK--ITER-------------------RSSAVGLPSPRPAPRRYKLLKDVMC 105
           S  S   N+  IT R                   +  + G PSPRP  RRYKLLKDVMC
Sbjct: 67  SKKSSTGNETGITNRSEYSGTDKIKQQDRDESAEKGKSSGTPSPRPTTRRYKLLKDVMC 123

[Close]

BLAST of Cucsa.259820 vs. TrEMBL
Match: A0A022RQV6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016574mg PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-22
Identity = 55/107 (51.40%), Postives = 68/107 (63.55%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATI-RVCDWCRSEQRTCRPAF 66
           +CCLCGDVGF  KLFRC+ C  RFQHSYCSNY C E  +A + +VCDWCR ++R    + 
Sbjct: 7   VCCLCGDVGFSDKLFRCSKCLTRFQHSYCSNYNCREYAEAAVLQVCDWCRCDEREYNISS 66

Query: 67  ASTTSQ------KSNKITER--RSSAVGLPSPRPAPRRYKLLKDVMC 105
           +   +          KI ++    S   LPSPRP+ RRYKLLKDVMC
Sbjct: 67  SKNNNSHIRSPYSGEKIKQQTPEKSTGKLPSPRPSARRYKLLKDVMC 113

[Close]

BLAST of Cucsa.259820 vs. TrEMBL
Match: B9GPA9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s14350g PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.2e-22
Identity = 58/127 (45.67%), Postives = 71/127 (55.91%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPAFA 66
           +CC+CGDVGFP KLFRC  C NRFQHSYCSNYY   S    I +CDWC+SE+R  R   +
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRNRFQHSYCSNYYSEFS--EPIELCDWCQSEERNARHGNS 66

Query: 67  STTS--------------------------QKSNKIT---ERRSSAVGLPSPRPAPRRYK 105
           S  S                          ++ N  T   ++  +  G+PSPRP+ RRYK
Sbjct: 67  SKKSGAGHDGGIVVTKRSEYTGDHKIKQHDREENSTTSSDQKGKNPSGIPSPRPSTRRYK 126

[Close]

BLAST of Cucsa.259820 vs. TrEMBL
Match: A0A067K1B1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14584 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.2e-22
Identity = 57/121 (47.11%), Postives = 68/121 (56.20%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPAFA 66
           +CC+CGDVGFP KLFRC+ C +RFQHSYCSNYY   S    I +CDWC+SE+R  R   +
Sbjct: 7   VCCMCGDVGFPDKLFRCSKCRHRFQHSYCSNYYSELS--EPIGLCDWCQSEERNARHGNS 66

Query: 67  STTS-----------------------QKSNKITERRSSAVGLPSPRPAPRRYKLLKDVM 105
           S  S                        +     E+  S  G+PSPR A RRYKLLKDVM
Sbjct: 67  SKKSVAGHDSGGVTNRSEYSGDKIKQHDREEGAAEKGKSPSGVPSPRTATRRYKLLKDVM 125

[Close]

BLAST of Cucsa.259820 vs. TAIR10
Match: AT3G60520.1 (AT3G60520.1 unknown protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-24
Identity = 60/130 (46.15%), Postives = 77/130 (59.23%), Query Frame = 1


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCR----- 60
           +DL   +CC+CGDVGF  KLF C+ C NRFQHSYCS+YY  E  D  I++CDWC+     
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYY-KEQAD-PIKICDWCQCEAKS 61

Query: 61  -----------SEQRTCRPAFASTTSQ-KSNKITERRSSAV---------GLPSPRPAPR 105
                      S +R+ R  ++S   Q K  +I +  SS++         G+PSPRPA R
Sbjct: 62  RTGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATR 121

[Close]

BLAST of Cucsa.259820 vs. TAIR10
Match: AT1G02070.1 (AT1G02070.1 unknown protein)

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-19
Identity = 54/130 (41.54%), Postives = 66/130 (50.77%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQR----TCR 66
           +CC+CGDVGF  KLF C +C  RFQHSYCSNYY G+  + T  +CDWCRS+ R      R
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYY-GQFAEPT-EICDWCRSDDRKLSNVAR 63

Query: 67  PAFASTTSQKSN-------------------KITERRSSAV---------GLPSPRPAPR 105
              +S+    S+                   K    R   V         G+ SP+ A R
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 123

[Close]

BLAST of Cucsa.259820 vs. NCBI nr
Match: gi|449433002|ref|XP_004134287.1| (PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus])

HSP 1 Score: 230.3 bits (586), Expect = 1.5e-57
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 61  CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
           CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC
Sbjct: 61  CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of Cucsa.259820 vs. NCBI nr
Match: gi|659074774|ref|XP_008437789.1| (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 2.0e-49
Identity = 95/105 (90.48%), Postives = 96/105 (91.43%), Query Frame = 1


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPA LFRCTNCSNRFQHSYCSNYY GESGDA IRVCDWCRSEQRT
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 61  CRP-AFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
            RP AFA+TTSQK  KITE RSSA GLPSPRPAPRRYKLLKDVMC
Sbjct: 101 RRPAAFATTTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of Cucsa.259820 vs. NCBI nr
Match: gi|590723505|ref|XP_007052203.1| (Late cornified envelope protein 1E [Theobroma cacao])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 58/119 (48.74%), Postives = 70/119 (58.82%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPAFA 66
           +CC+CGDVGFP KLFRC  C +RFQHSYCSNYY   +    I +CDWC+SE+R+ R   +
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSELA--EPIELCDWCQSEERSSRHGSS 66

Query: 67  STTSQKSNK--ITER-------------------RSSAVGLPSPRPAPRRYKLLKDVMC 105
           S  S   N+  IT R                   +  + G PSPRP  RRYKLLKDVMC
Sbjct: 67  SKKSSTGNETGITNRSEYSGTDKIKQQDRDESAEKGKSSGTPSPRPTTRRYKLLKDVMC 123

[Close]

BLAST of Cucsa.259820 vs. NCBI nr
Match: gi|848861144|ref|XP_012831396.1| (PREDICTED: uncharacterized protein LOC105952400 [Erythranthe guttata])

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-22
Identity = 55/107 (51.40%), Postives = 68/107 (63.55%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATI-RVCDWCRSEQRTCRPAF 66
           +CCLCGDVGF  KLFRC+ C  RFQHSYCSNY C E  +A + +VCDWCR ++R    + 
Sbjct: 7   VCCLCGDVGFSDKLFRCSKCLTRFQHSYCSNYNCREYAEAAVLQVCDWCRCDEREYNISS 66

Query: 67  ASTTSQ------KSNKITER--RSSAVGLPSPRPAPRRYKLLKDVMC 105
           +   +          KI ++    S   LPSPRP+ RRYKLLKDVMC
Sbjct: 67  SKNNNSHIRSPYSGEKIKQQTPEKSTGKLPSPRPSARRYKLLKDVMC 113

[Close]

BLAST of Cucsa.259820 vs. NCBI nr
Match: gi|224067608|ref|XP_002302513.1| (hypothetical protein POPTR_0002s14350g [Populus trichocarpa])

HSP 1 Score: 112.1 bits (279), Expect = 6.0e-22
Identity = 58/127 (45.67%), Postives = 71/127 (55.91%), Query Frame = 1


Query: 7   LCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPAFA 66
           +CC+CGDVGFP KLFRC  C NRFQHSYCSNYY   S    I +CDWC+SE+R  R   +
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRNRFQHSYCSNYYSEFS--EPIELCDWCQSEERNARHGNS 66

Query: 67  STTS--------------------------QKSNKIT---ERRSSAVGLPSPRPAPRRYK 105
           S  S                          ++ N  T   ++  +  G+PSPRP+ RRYK
Sbjct: 67  SKKSGAGHDGGIVVTKRSEYTGDHKIKQHDREENSTTSSDQKGKNPSGIPSPRPSTRRYK 126

The following BLAST results are available for this feature:

BLAST of Cucsa.259820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5P1_CUCSA	1.1e-57	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1	[more]
A0A061DUE3_THECC	8.5e-23	48.74	Late cornified envelope protein 1E OS=Theobroma cacao GN=TCM_005618 PE=4 SV=1	[more]
A0A022RQV6_ERYGU	2.5e-22	51.40	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016574mg PE=4 SV=1	[more]
B9GPA9_POPTR	4.2e-22	45.67	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s14350g PE=4 SV=1	[more]
A0A067K1B1_JATCU	7.2e-22	47.11	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14584 PE=4 SV=1	[more]

BLAST of Cucsa.259820 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60520.1	1.4e-24	46.15	unknown protein	[more]
AT1G02070.1	3.9e-19	41.54	unknown protein	[more]

BLAST of Cucsa.259820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433002\|ref\|XP_004134287.1\|	1.5e-57	100.00	PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus]	[more]
gi\|659074774\|ref\|XP_008437789.1\|	2.0e-49	90.48	PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]	[more]
gi\|590723505\|ref\|XP_007052203.1\|	1.2e-22	48.74	Late cornified envelope protein 1E [Theobroma cacao]	[more]
gi\|848861144\|ref\|XP_012831396.1\|	3.5e-22	51.40	PREDICTED: uncharacterized protein LOC105952400 [Erythranthe guttata]	[more]
gi\|224067608\|ref\|XP_002302513.1\|	6.0e-22	45.67	hypothetical protein POPTR_0002s14350g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.259820.1	Cucsa.259820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33779	FAMILY NOT NAMED	coord: 8..104 score: 8.0
None	No IPR available	PANTHER	PTHR33779:SF2	SUBFAMILY NOT NAMED	coord: 8..104 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.259820	Csa3G117940	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.259820	MELO3C005964	Melon (DHL92) v3.5.1	cgymeB439
Cucsa.259820	ClCG05G000270	Watermelon (Charleston Gray)	cgywcgB451
Cucsa.259820	CSPI03G07300	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.259820	CmaCh06G009630	Cucurbita maxima (Rimu)	cgycmaB0728
Cucsa.259820	CmoCh06G009850	Cucurbita moschata (Rifu)	cgycmoB0718
Cucsa.259820	CmoCh14G022240	Cucurbita moschata (Rifu)	cgycmoB0700
Cucsa.259820	Lsi05G022010	Bottle gourd (USVL1VR-Ls)	cgylsiB415
Cucsa.259820	Cp4.1LG03g15810	Cucurbita pepo (Zucchini)	cgycpeB0682
Cucsa.259820	MELO3C005964.2	Melon (DHL92) v3.6.1	cgymedB432
Cucsa.259820	CsaV3_3G007420	Cucumber (Chinese Long) v3	cgycucB387
Cucsa.259820	Carg24170	Silver-seed gourd	carcgyB0117
Cucsa.259820	Carg17678	Silver-seed gourd	carcgyB0165

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.259820	Cucurbita maxima (Rimu)	cgycmaB0707
Cucsa.259820	Cucurbita maxima (Rimu)	cgycmaB0709
Cucsa.259820	Watermelon (97103) v1	cgywmB479
Cucsa.259820	Cucurbita pepo (Zucchini)	cgycpeB0687
Cucsa.259820	Watermelon (97103) v2	cgywmbB452
Cucsa.259820	Wax gourd	cgywgoB514