Cp4.1LG03g15810 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g15810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPotassium voltage-gated channel subfamily C member 4
LocationCp4.1LG03 : 13652343 .. 13652780 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTACAATTCCCCTGTAACCCCCAAGCCATGGATTTGAATCGCCCCCTCTGTTGCCTGTGTGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCGCCAATTGCTCCAACCGCTTCCAGCACTCGTAAGGACACTCACGCTCTTCTTTTCTTTCTCGCCCTTTTCGTACCAACTTCAATTTTGGTAGTTCAGTTATTGCAGTAACTTCTACTGCGGGGAATCGGCCGACCCAATAACTCGACTCTGCGATTGGTGCCGAACCGAACACACAACTCGCCGCCCTGGCCCTGCGGCTGCCAACAATGGCGCCACATCCCAAAAGCCTCACAAAATCACTGATCAAATTACTGAAACAAAAAGCTCTGCCACTGGAGTGCCCTCGCCTCGCCCTGCTCCACGCCGCTACAAGCTTCTCAAGGATGTCATGTGTTGA

mRNA sequence

ATGCCCATGGATTTGAATCGCCCCCTCTGTTGCCTGTGTGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCGCCAATTGCTCCAACCGCTTCCAGCACTCTAACTTCTACTGCGGGGAATCGGCCGACCCAATAACTCGACTCTGCGATTGGTGCCGAACCGAACACACAACTCGCCGCCCTGGCCCTGCGGCTGCCAACAATGGCGCCACATCCCAAAAGCCTCACAAAATCACTGATCAAATTACTGAAACAAAAAGCTCTGCCACTGGAGTGCCCTCGCCTCGCCCTGCTCCACGCCGCTACAAGCTTCTCAAGGATGTCATGTGTTGA

Coding sequence (CDS)

ATGCCCATGGATTTGAATCGCCCCCTCTGTTGCCTGTGTGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCGCCAATTGCTCCAACCGCTTCCAGCACTCTAACTTCTACTGCGGGGAATCGGCCGACCCAATAACTCGACTCTGCGATTGGTGCCGAACCGAACACACAACTCGCCGCCCTGGCCCTGCGGCTGCCAACAATGGCGCCACATCCCAAAAGCCTCACAAAATCACTGATCAAATTACTGAAACAAAAAGCTCTGCCACTGGAGTGCCCTCGCCTCGCCCTGCTCCACGCCGCTACAAGCTTCTCAAGGATGTCATGTGTTGA

Protein sequence

MPMDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSNFYCGESADPITRLCDWCRTEHTTRRPGPAAANNGATSQKPHKITDQITETKSSATGVPSPRPAPRRYKLLKDVMC
Homology
[Close]
BLAST of Cp4.1LG03g15810 vs. TrEMBL
Match: A0A0A0L5P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-36
Identity = 79/112 (70.54%), Postives = 86/112 (76.79%), Query Frame = 1 

Query: 3   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESADPITRLCDWCRTEHTT 62
           MDLN PLCCLCGDVGFPAKLFRC NCSNRFQH   SN+YCGES D   R+CDWCR+E  T
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 63  RRPGPAAANNGATSQKPHKITDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112
            RP  A+     TSQK +K    ITE +SSA G+PSPRPAPRRYKLLKDVMC
Sbjct: 61  CRPAFAS----TTSQKSNK----ITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]
BLAST of Cp4.1LG03g15810 vs. TrEMBL
Match: Q9M207_ARATH (At3g60520 OS=Arabidopsis thaliana GN=T8B10_180 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-22
Identity = 64/129 (49.61%), Postives = 78/129 (60.47%), Query Frame = 1 

Query: 3   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESADPITRLCDWCRTEHTTR 62
           +DL R +CC+CGDVGF  KLF C+ C NRFQHS  + Y  E ADPI ++CDWC+ E  +R
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPI-KICDWCQCEAKSR 61

Query: 63  RPGPAAANNGAT--------SQKPHKITDQ-ITETKSSA---------TGVPSPRPAPRR 112
                  N G++        S   H+I  Q I +T SS+         TGVPSPRPA RR
Sbjct: 62  TGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRR 121

[Close]
BLAST of Cp4.1LG03g15810 vs. TrEMBL
Match: D7LRR6_ARALL (Zinc ion binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_907580 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-22
Identity = 64/129 (49.61%), Postives = 79/129 (61.24%), Query Frame = 1 

Query: 3   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESADPITRLCDWCRTEHTTR 62
           +DL R +CC+CGDVGF  KLF C+ C NRFQHS  + Y  E ADPI ++CDWC+ E  +R
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPI-KICDWCQCEAKSR 61

Query: 63  RPGPAAANNGAT--------SQKPHKITDQ-ITETKSSA---------TGVPSPRPAPRR 112
                 AN G++        S   H+I  Q I +T SS+         +GVPSPRPA RR
Sbjct: 62  TGAKHGANGGSSKRSYRSEYSSAHHQIKQQEIHQTTSSSIPPAAEKGKSGVPSPRPATRR 121

[Close]
BLAST of Cp4.1LG03g15810 vs. TrEMBL
Match: A9PG29_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05730g PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.1e-20
Identity = 58/127 (45.67%), Postives = 72/127 (56.69%), Query Frame = 1 

Query: 9   LCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESADPITRLCDWCRTEHTTRRPGPA 68
           +CC+CGDVGFP KLFRC  C NRFQH   SN+Y GE ++PI + CDWC++E    R G +
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRNRFQHLYCSNYY-GEFSEPIEQ-CDWCQSEERNARHGNS 66

Query: 69  AANNGATSQK------------PHKITDQITETKSSA---------TGVPSPRPAPRRYK 112
           +  +GA                 HKI     E  S+          +G+PSPRP  RRYK
Sbjct: 67  SKKSGAEHDSGTLVTKRSEYSGDHKIKQHDREENSTTSSDQKGKNPSGIPSPRPTTRRYK 126

[Close]
BLAST of Cp4.1LG03g15810 vs. TrEMBL
Match: A0A087GZF5_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G261800 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.3e-20
Identity = 62/130 (47.69%), Postives = 75/130 (57.69%), Query Frame = 1 

Query: 3   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESADPITRLCDWCRTEHTTR 62
           +DL R +CC+CGD+GF  KLF C  C NRFQHS  + Y  E ADPI ++CDWC+ E    
Sbjct: 2   VDLERKVCCMCGDIGFFDKLFHCTKCLNRFQHSYCSSYYKEQADPI-KICDWCQYE-AKN 61

Query: 63  RPGPAAANNGATSQK--------PHKITDQ----ITETKS-------SATGVPSPRPAPR 112
           R G     NG +S++         H+I  Q    IT + S         TGVPSPR A R
Sbjct: 62  RTGVKHGLNGGSSKRSYRSEYSSAHQIKQQEVNIITTSNSIPPVTDKGKTGVPSPRTATR 121

[Close]
BLAST of Cp4.1LG03g15810 vs. TAIR10
Match: AT3G60520.1 (AT3G60520.1 unknown protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-25
Identity = 64/129 (49.61%), Postives = 78/129 (60.47%), Query Frame = 1 

Query: 3   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESADPITRLCDWCRTEHTTR 62
           +DL R +CC+CGDVGF  KLF C+ C NRFQHS  + Y  E ADPI ++CDWC+ E  +R
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPI-KICDWCQCEAKSR 61

Query: 63  RPGPAAANNGAT--------SQKPHKITDQ-ITETKSSA---------TGVPSPRPAPRR 112
                  N G++        S   H+I  Q I +T SS+         TGVPSPRPA RR
Sbjct: 62  TGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRR 121

[Close]
BLAST of Cp4.1LG03g15810 vs. TAIR10
Match: AT1G02070.1 (AT1G02070.1 unknown protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-18
Identity = 54/131 (41.22%), Postives = 72/131 (54.96%), Query Frame = 1 

Query: 9   LCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESADPITRLCDWCRTEHTTRRPGPAA 68
           +CC+CGDVGF  KLF C +C  RFQHS  + Y G+ A+P T +CDWCR++   R+    A
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEP-TEICDWCRSD--DRKLSNVA 63

Query: 69  ANNGATSQKP-------------------HKIT------DQITE-TKSSATGVPSPRPAP 112
            + G++S+KP                   H+I       DQ+ +       GV SP+ A 
Sbjct: 64  RHGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTAT 123

[Close]
BLAST of Cp4.1LG03g15810 vs. NCBI nr
Match: gi|449433002|ref|XP_004134287.1| (PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 2.7e-36
Identity = 79/112 (70.54%), Postives = 86/112 (76.79%), Query Frame = 1 

Query: 3   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESADPITRLCDWCRTEHTT 62
           MDLN PLCCLCGDVGFPAKLFRC NCSNRFQH   SN+YCGES D   R+CDWCR+E  T
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 63  RRPGPAAANNGATSQKPHKITDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112
            RP  A+     TSQK +K    ITE +SSA G+PSPRPAPRRYKLLKDVMC
Sbjct: 61  CRPAFAS----TTSQKSNK----ITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]
BLAST of Cp4.1LG03g15810 vs. NCBI nr
Match: gi|659074774|ref|XP_008437789.1| (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 4.5e-36
Identity = 80/112 (71.43%), Postives = 85/112 (75.89%), Query Frame = 1 

Query: 3   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESADPITRLCDWCRTEHTT 62
           MDLN PLCCLCGDVGFPA LFRC NCSNRFQH   SN+Y GES D I R+CDWCR+E  T
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 63  RRPGPAAANNGATSQKPHKITDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112
           RRP   AA    TSQK  K    ITE +SSA G+PSPRPAPRRYKLLKDVMC
Sbjct: 101 RRP---AAFATTTSQKDRK----ITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]
BLAST of Cp4.1LG03g15810 vs. NCBI nr
Match: gi|15232353|ref|NP_191611.1| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 112.8 bits (281), Expect = 3.7e-22
Identity = 64/129 (49.61%), Postives = 78/129 (60.47%), Query Frame = 1 

Query: 3   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESADPITRLCDWCRTEHTTR 62
           +DL R +CC+CGDVGF  KLF C+ C NRFQHS  + Y  E ADPI ++CDWC+ E  +R
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPI-KICDWCQCEAKSR 61

Query: 63  RPGPAAANNGAT--------SQKPHKITDQ-ITETKSSA---------TGVPSPRPAPRR 112
                  N G++        S   H+I  Q I +T SS+         TGVPSPRPA RR
Sbjct: 62  TGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRR 121

[Close]
BLAST of Cp4.1LG03g15810 vs. NCBI nr
Match: gi|297820914|ref|XP_002878340.1| (zinc ion binding protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 112.1 bits (279), Expect = 6.4e-22
Identity = 64/129 (49.61%), Postives = 79/129 (61.24%), Query Frame = 1 

Query: 3   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESADPITRLCDWCRTEHTTR 62
           +DL R +CC+CGDVGF  KLF C+ C NRFQHS  + Y  E ADPI ++CDWC+ E  +R
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPI-KICDWCQCEAKSR 61

Query: 63  RPGPAAANNGAT--------SQKPHKITDQ-ITETKSSA---------TGVPSPRPAPRR 112
                 AN G++        S   H+I  Q I +T SS+         +GVPSPRPA RR
Sbjct: 62  TGAKHGANGGSSKRSYRSEYSSAHHQIKQQEIHQTTSSSIPPAAEKGKSGVPSPRPATRR 121

[Close]
BLAST of Cp4.1LG03g15810 vs. NCBI nr
Match: gi|727592243|ref|XP_010469171.1| (PREDICTED: uncharacterized protein LOC104749277 [Camelina sativa])

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-21
Identity = 62/128 (48.44%), Postives = 77/128 (60.16%), Query Frame = 1 

Query: 3   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESADPITRLCDWCRTEHTTR 62
           +D  R +CC+CGDVGF  KLF C+ C NRFQHS  + Y  E ADPI ++CDWC+ E  +R
Sbjct: 2   VDPERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYREQADPI-KICDWCQCEAKSR 61

Query: 63  RPGPAAANNGATSQ-------KPHKITDQIT-ETKSSA---------TGVPSPRPAPRRY 112
                  N G++ +         H+I  Q T +T SS+         TGVPSPRPA RRY
Sbjct: 62  NGAKQGVNGGSSKRSYRSEYSSGHQIKQQETNQTTSSSVPPAADKGKTGVPSPRPATRRY 121

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g15810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g15810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5P1_CUCSA1.9e-3670.54Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1[more]
Q9M207_ARATH2.6e-2249.61At3g60520 OS=Arabidopsis thaliana GN=T8B10_180 PE=2 SV=1[more]
D7LRR6_ARALL4.4e-2249.61Zinc ion binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_90758... [more]
A9PG29_POPTR7.1e-2045.67Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05730g PE=2 SV=1[more]
A0A087GZF5_ARAAL9.3e-2047.69Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G261800 PE=4 SV=1[more]
BLAST of Cp4.1LG03g15810 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G60520.11.3e-2549.61 unknown protein[more]
AT1G02070.11.6e-1841.22 unknown protein[more]
BLAST of Cp4.1LG03g15810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449433002|ref|XP_004134287.1|2.7e-3670.54PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus][more]
gi|659074774|ref|XP_008437789.1|4.5e-3671.43PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo][more]
gi|15232353|ref|NP_191611.1|3.7e-2249.61uncharacterized protein [Arabidopsis thaliana][more]
gi|297820914|ref|XP_002878340.1|6.4e-2249.61zinc ion binding protein [Arabidopsis lyrata subsp. lyrata][more]
gi|727592243|ref|XP_010469171.1|3.2e-2148.44PREDICTED: uncharacterized protein LOC104749277 [Camelina sativa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g15810.1Cp4.1LG03g15810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33779FAMILY NOT NAMEDcoord: 1..111
score: 8.1
NoneNo IPR availablePANTHERPTHR33779:SF2SUBFAMILY NOT NAMEDcoord: 1..111
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g15810Cucsa.259820Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g15810CmaCh06G009630Cucurbita maxima (Rimu)cmacpeB839
Cp4.1LG03g15810CmoCh14G022240Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g15810CmoCh06G009850Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g15810Csa3G117940Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g15810MELO3C005964Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g15810ClCG05G000270Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g15810CSPI03G07300Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g15810Lsi05G022010Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g15810MELO3C005964.2Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g15810CsaV3_3G007420Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g15810CsGy3G007440Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g15810Carg24170Silver-seed gourdcarcpeB0144
Cp4.1LG03g15810Carg17678Silver-seed gourdcarcpeB0192
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g15810Cucumber (Chinese Long) v3cpecucB0774
Cp4.1LG03g15810Wax gourdcpewgoB0761
Cp4.1LG03g15810Wax gourdcpewgoB0770
Cp4.1LG03g15810Cucurbita pepo (Zucchini)cpecpeB217
Cp4.1LG03g15810Cucurbita pepo (Zucchini)cpecpeB479
Cp4.1LG03g15810Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g15810Cucumber (Gy14) v1cgycpeB0574
Cp4.1LG03g15810Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g15810Cucurbita moschata (Rifu)cmocpeB589
Cp4.1LG03g15810Wild cucumber (PI 183967)cpecpiB624
Cp4.1LG03g15810Cucumber (Chinese Long) v2cpecuB622
Cp4.1LG03g15810Watermelon (97103) v1cpewmB613
Cp4.1LG03g15810Melon (DHL92) v3.6.1cpemedB651