Carg24170 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24170
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc ion-binding protein
Location	Cucurbita_argyrosperma_scaffold_221 : 103311 .. 103851 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCACATCATCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCGTAAGAATCCCTTAATTTTAATTCTTTTATTGTTGTGCTAGAATGTTTGTTTAATCCATCCCACCGTAATTTAAAAATTATCTTAAATAAATTAAGCAAAGAGACAGAGAAAAGATTCTTGGTACAAGAATCAAATACTGTGAACTATAATTTATTACTAAATATCTATTGTTTCGATTAATGGTGATGTTGGGGTTTGGTTCAGTTATTGCAGTAACTATTACGGCGAAATGGCAGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA

mRNA sequence

ATGGCTTCACATCATCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCTTATTGCAGTAACTATTACGGCGAAATGGCAGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA

Coding sequence (CDS)

ATGGCTTCACATCATCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCTTATTGCAGTAACTATTACGGCGAAATGGCAGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA

Protein sequence

MASHHPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC

Homology

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BLAST of Carg24170 vs. NCBI nr
Match: XP_023540879.1 (uncharacterized protein LOC111801126 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-56
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MASHHPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCE 60
           MASHH  PLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE+AEAIE CDWCRCE
Sbjct: 1   MASHH--PLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGELAEAIEVCDWCRCE 60

Query: 61  RRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           RRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  RRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 109

[Close]

BLAST of Carg24170 vs. NCBI nr
Match: XP_022974251.1 (uncharacterized protein LOC111472884 isoform X2 [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 1.5e-51
Identity = 102/117 (87.18%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MASHH------PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEAC 60
           MASHH            VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE AEAIE C
Sbjct: 1   MASHHXXXXXXXXXXXXVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           DWCRCERRCGRRGSAARK GVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 117

[Close]

BLAST of Carg24170 vs. NCBI nr
Match: XP_022974249.1 (uncharacterized protein LOC111472884 isoform X1 [Cucurbita maxima])

HSP 1 Score: 206.8 bits (525), Expect = 3.7e-50
Identity = 102/118 (86.44%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MASHH------PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEAC 60
           MASHH            VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE AEAIE C
Sbjct: 1   MASHHXXXXXXXXXXXXVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKSGVASQ-KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           DWCRCERRCGRRGSAARK GVASQ KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 118

[Close]

BLAST of Carg24170 vs. NCBI nr
Match: XP_004134287.1 (PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus] >KGN56359.1 hypothetical protein Csa_3G117940 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.6e-27
Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 10  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GEMAEA-IEACDWCRCERRCGRRG 69
           PP+CCLCGDVGFPA LFRCT CS+RFQHSYCSNYY GE  +A I  CDWCR E+R  R  
Sbjct: 5   PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPA 64

Query: 70  SAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
            A+      SQKS+   +R  ++ G+PSPR APRRYKLLKDVMC
Sbjct: 65  FAS----TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of Carg24170 vs. NCBI nr
Match: XP_008437789.1 (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 9.8e-27
Identity = 66/104 (63.46%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 10  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GEMAEA-IEACDWCRCERRCGRRG 69
           PP+CCLCGDVGFPANLFRCT CS+RFQHSYCSNYY GE  +A I  CDWCR E+R  R  
Sbjct: 45  PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRTRRPA 104

Query: 70  SAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           + A      SQK     +   ++ G+PSPR APRRYKLLKDVMC
Sbjct: 105 AFAT---TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of Carg24170 vs. TAIR10
Match: AT1G02070.1 (unknown protein)

HSP 1 Score: 104.0 bits (258), Expect = 6.1e-23
Identity = 58/130 (44.62%), Postives = 68/130 (52.31%), Query Frame = 0


Query: 12  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGSAAR 71
           VCC+CGDVGF   LF C  C  RFQHSYCSNYYG+ AE  E CDWCR + R  +  + AR
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEPTEICDWCRSDDR--KLSNVAR 63

Query: 72  KSGVASQKSSGQDKRER------------------------------NSGGMPSPRVAPR 112
             G +S+K S   K E                               + GG+ SP+ A R
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 123

[Close]

BLAST of Carg24170 vs. TAIR10
Match: AT3G60520.1 (unknown protein)

HSP 1 Score: 102.4 bits (254), Expect = 1.8e-22
Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 0


Query: 12  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGSAAR 71
           VCC+CGDVGF   LF C+ C +RFQHSYCS+YY E A+ I+ CDWC+CE +  R G+   
Sbjct: 8   VCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPIKICDWCQCEAK-SRTGAKHG 67

Query: 72  KSGVASQK-----------------------SSGQDKRERNSGGMPSPRVAPRRYKLLKD 112
            +G +S++                       SS     ++   G+PSPR A RRYKLLKD
Sbjct: 68  VNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRRYKLLKD 127

[Close]

BLAST of Carg24170 vs. TrEMBL
Match: tr|A0A0A0L5P1|A0A0A0L5P1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-27
Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 10  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GEMAEA-IEACDWCRCERRCGRRG 69
           PP+CCLCGDVGFPA LFRCT CS+RFQHSYCSNYY GE  +A I  CDWCR E+R  R  
Sbjct: 5   PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPA 64

Query: 70  SAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
            A+      SQKS+   +R  ++ G+PSPR APRRYKLLKDVMC
Sbjct: 65  FAS----TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of Carg24170 vs. TrEMBL
Match: tr|A0A1S3AVF1|A0A1S3AVF1_CUCME (uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.5e-27
Identity = 66/104 (63.46%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 10  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GEMAEA-IEACDWCRCERRCGRRG 69
           PP+CCLCGDVGFPANLFRCT CS+RFQHSYCSNYY GE  +A I  CDWCR E+R  R  
Sbjct: 45  PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRTRRPA 104

Query: 70  SAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           + A      SQK     +   ++ G+PSPR APRRYKLLKDVMC
Sbjct: 105 AFAT---TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of Carg24170 vs. TrEMBL
Match: tr|A0A061DUE3|A0A061DUE3_THECC (Late cornified envelope protein 1E OS=Theobroma cacao OX=3641 GN=TCM_005618 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.5e-27
Identity = 65/120 (54.17%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 9   LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGS 68
           L  VCC+CGDVGFP  LFRC  C HRFQHSYCSNYY E+AE IE CDWC+ E R  R GS
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSELAEPIELCDWCQSEERSSRHGS 63

Query: 69  AARKSGVASQ-------KSSGQDK----------RERNSGGMPSPRVAPRRYKLLKDVMC 112
           +++KS   ++       + SG DK           +  S G PSPR   RRYKLLKDVMC
Sbjct: 64  SSKKSSTGNETGITNRSEYSGTDKIKQQDRDESAEKGKSSGTPSPRPTTRRYKLLKDVMC 123

[Close]

BLAST of Carg24170 vs. TrEMBL
Match: tr|A0A2C9VTF1|A0A2C9VTF1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G050600 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 9   LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGS 68
           L  VCC+CGDVGFP  LFRC+ C HRFQHSYCSNYY E++E+IE CDWC+ E R  R G+
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCSKCRHRFQHSYCSNYYSELSESIELCDWCQSEERNARHGN 63

Query: 69  AARKSGV-------------ASQKSSGQDKRE------RNSGGMPSPRVAPRRYKLLKDV 112
           +++KS V             +  K    D+ E      ++  G+PSPR A RRYKLLKDV
Sbjct: 64  SSKKSAVGHDSGGITNRSEYSGDKIKQHDREESTTEKGKSPSGVPSPRTATRRYKLLKDV 123

[Close]

BLAST of Carg24170 vs. TrEMBL
Match: tr|A0A067K1B1|A0A067K1B1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14584 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.5e-26
Identity = 65/123 (52.85%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 9   LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGS 68
           L  VCC+CGDVGFP  LFRC+ C HRFQHSYCSNYY E++E I  CDWC+ E R  R G+
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCSKCRHRFQHSYCSNYYSELSEPIGLCDWCQSEERNARHGN 63

Query: 69  AARKSGVASQKSSGQDKRERNSG--------------------GMPSPRVAPRRYKLLKD 112
           +++KS VA   S G   R   SG                    G+PSPR A RRYKLLKD
Sbjct: 64  SSKKS-VAGHDSGGVTNRSEYSGDKIKQHDREEGAAEKGKSPSGVPSPRTATRRYKLLKD 123

The following BLAST results are available for this feature:

BLAST of Carg24170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540879.1	1.2e-56	96.40	uncharacterized protein LOC111801126 [Cucurbita pepo subsp. pepo]	[more]
XP_022974251.1	1.5e-51	87.18	uncharacterized protein LOC111472884 isoform X2 [Cucurbita maxima]	[more]
XP_022974249.1	3.7e-50	86.44	uncharacterized protein LOC111472884 isoform X1 [Cucurbita maxima]	[more]
XP_004134287.1	2.6e-27	64.42	PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus] >KGN56359.1 hy...	[more]
XP_008437789.1	9.8e-27	63.46	PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]	[more]

BLAST of Carg24170 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02070.1	6.1e-23	44.62	unknown protein	[more]
AT3G60520.1	1.8e-22	44.72	unknown protein	[more]

BLAST of Carg24170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24170 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5P1\|A0A0A0L5P1_CUCSA	1.7e-27	64.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1	[more]
tr\|A0A1S3AVF1\|A0A1S3AVF1_CUCME	6.5e-27	63.46	uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=...	[more]
tr\|A0A061DUE3\|A0A061DUE3_THECC	8.5e-27	54.17	Late cornified envelope protein 1E OS=Theobroma cacao OX=3641 GN=TCM_005618 PE=4...	[more]
tr\|A0A2C9VTF1\|A0A2C9VTF1_MANES	1.9e-26	51.64	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G050600 PE=4 SV=...	[more]
tr\|A0A067K1B1\|A0A067K1B1_JATCU	5.5e-26	52.85	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14584 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24170-RA	Carg24170-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..101
None	No IPR available	PANTHER	PTHR33779	FAMILY NOT NAMED	coord: 11..79 coord: 77..111
None	No IPR available	PANTHER	PTHR33779:SF2	SUBFAMILY NOT NAMED	coord: 77..111
None	No IPR available	PANTHER	PTHR33779:SF2	SUBFAMILY NOT NAMED	coord: 11..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24170	Csa3G117940	Cucumber (Chinese Long) v2	carcuB0105
Carg24170	MELO3C005964	Melon (DHL92) v3.5.1	carmeB0099
Carg24170	ClCG05G000270	Watermelon (Charleston Gray)	carwcgB0096
Carg24170	CSPI03G07300	Wild cucumber (PI 183967)	carcpiB0110
Carg24170	Cucsa.259820	Cucumber (Gy14) v1	carcgyB0117
Carg24170	CmaCh06G009630	Cucurbita maxima (Rimu)	carcmaB0128
Carg24170	CmoCh06G009850	Cucurbita moschata (Rifu)	carcmoB0137
Carg24170	CmoCh14G022240	Cucurbita moschata (Rifu)	carcmoB0136
Carg24170	Lsi05G022010	Bottle gourd (USVL1VR-Ls)	carlsiB088
Carg24170	Cp4.1LG03g15810	Cucurbita pepo (Zucchini)	carcpeB0144
Carg24170	CsGy3G007440	Cucumber (Gy14) v2	carcgybB0105
Carg24170	MELO3C005964.2	Melon (DHL92) v3.6.1	carmedB0101
Carg24170	CsaV3_3G007420	Cucumber (Chinese Long) v3	carcucB0114

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24170	Carg17678	Silver-seed gourd	carcarB109

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24170	Cucurbita maxima (Rimu)	carcmaB0127
Carg24170	Cucurbita pepo (Zucchini)	carcpeB0145
Carg24170	Watermelon (97103) v1	carwmB0094
Carg24170	Watermelon (97103) v2	carwmbB0098
Carg24170	Wax gourd	carwgoB0111