CmaCh06G009630 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G009630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Zinc ion-binding protein
Location	Cma_Chr06 : 6561492 .. 6562214 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCACACGCCCCTTCCCCTCTCTCCTCTCCGCCCCTTCCGCCTCTCTGCCTCCTCTCCGAAAGAGACCTCTCCGCCCACTATCTCTCCCTCTTATTTAACCCCCCTCTCTCCCCTCTCCCCCTTAATCATCAACATGGCTTCACATCATCCTCATCCTCTTCCTCTTCCTCTTCCTCTTCCTCCCGTTTGTTGCTTGTGCGGCGACGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTTCAACACTCGTAAGAATTCCTTAATTTTGATTCTTTTGTTGTTGTGGGAGAATGTTTGCTTAATCCAAATATATAGATATTTATCTTATAATAAAATATCATTATATATATAGTAAACTATCATGAGACCAGTAATGGATATATTGTTGGGGTTTGGTTCAGTTATTGCAGCAACTATTACGGCGAATCGGCAGAGGCTATTGAAGTCTGCGATTGGTGCAGATGTGAACGGAGATGTGGCCGCCGTGGCTCTGCTGCAAGGAAGTTTGGCGTCGCATCCCAAAAAAAGAGCTCCGGCCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAAACGTTGTTATTGTTCCAGAAATTTTGAATTTCTCATACCAATATTTTAAGCTTAATAAATATAAATATTCATAAATTT

mRNA sequence

GTCCACACGCCCCTTCCCCTCTCTCCTCTCCGCCCCTTCCGCCTCTCTGCCTCCTCTCCGAAAGAGACCTCTCCGCCCACTATCTCTCCCTCTTATTTAACCCCCCTCTCTCCCCTCTCCCCCTTAATCATCAACATGGCTTCACATCATCCTCATCCTCTTCCTCTTCCTCTTCCTCTTCCTCCCGTTTGTTGCTTGTGCGGCGACGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTTCAACACTCTTATTGCAGCAACTATTACGGCGAATCGGCAGAGGCTATTGAAGTCTGCGATTGGTGCAGATGTGAACGGAGATGTGGCCGCCGTGGCTCTGCTGCAAGGAAGTTTGGCGTCGCATCCCAAAAAAAGAGCTCCGGCCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAAACGTTGTTATTGTTCCAGAAATTTTGAATTTCTCATACCAATATTTTAAGCTTAATAAATATAAATATTCATAAATTT

Coding sequence (CDS)

ATGGCTTCACATCATCCTCATCCTCTTCCTCTTCCTCTTCCTCTTCCTCCCGTTTGTTGCTTGTGCGGCGACGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTTCAACACTCTTATTGCAGCAACTATTACGGCGAATCGGCAGAGGCTATTGAAGTCTGCGATTGGTGCAGATGTGAACGGAGATGTGGCCGCCGTGGCTCTGCTGCAAGGAAGTTTGGCGTCGCATCCCAAAAAAAGAGCTCCGGCCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA

Protein sequence

MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC

Homology

[Close]

BLAST of CmaCh06G009630 vs. TrEMBL
Match: A0A0A0L5P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.4e-28
Identity = 67/105 (63.81%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 16  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GESAEA-IEVCDWCRCERRCGRRG 75
           PP+CCLCGDVGFPA LFRCT CS+RFQHSYCSNYY GES +A I VCDWCR E+R  R  
Sbjct: 5   PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPA 64

Query: 76  SAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
                F   + +KS+   +R  ++ G+PSPR APRRYKLLKDVMC
Sbjct: 65  -----FASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of CmaCh06G009630 vs. TrEMBL
Match: A0A061DUE3_THECC (Late cornified envelope protein 1E OS=Theobroma cacao GN=TCM_005618 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-27
Identity = 65/120 (54.17%), Postives = 76/120 (63.33%), Query Frame = 1


Query: 15  LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRCGRRGS 74
           L  VCC+CGDVGFP  LFRC  C HRFQHSYCSNYY E AE IE+CDWC+ E R  R GS
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSELAEPIELCDWCQSEERSSRHGS 63

Query: 75  AARK------FGVASQKKSSGQDK----------RERNSGGMPSPRVAPRRYKLLKDVMC 119
           +++K       G+ ++ + SG DK           +  S G PSPR   RRYKLLKDVMC
Sbjct: 64  SSKKSSTGNETGITNRSEYSGTDKIKQQDRDESAEKGKSSGTPSPRPTTRRYKLLKDVMC 123

[Close]

BLAST of CmaCh06G009630 vs. TrEMBL
Match: A0A067H1B5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033128mg PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.0e-26
Identity = 63/123 (51.22%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 15  LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRCGRRGS 74
           L  VCC+CGDVGFP  LFRC  C +R QHSYCSNYY E AE IE+CDWC+ E R  R GS
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCNKCRNRIQHSYCSNYYSEFAEPIEMCDWCQSEERSSRLGS 63

Query: 75  AARK----FGVA---------------SQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKD 119
           +A+K    +G                  +++SSG  ++ +N  G PSPR   RRYKLLKD
Sbjct: 64  SAKKSSSGYGTGITNRSEYSGDKIKQQDREESSGSAEKGKNPSGTPSPRPTTRRYKLLKD 123

[Close]

BLAST of CmaCh06G009630 vs. TrEMBL
Match: V4TE16_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022623mg PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.0e-26
Identity = 63/123 (51.22%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 15  LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRCGRRGS 74
           L  VCC+CGDVGFP  LFRC  C +R QHSYCSNYY E AE IE+CDWC+ E R  R GS
Sbjct: 38  LQTVCCMCGDVGFPDKLFRCNKCRNRIQHSYCSNYYSEFAEPIEMCDWCQSEERSSRLGS 97

Query: 75  AARK----FGVA---------------SQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKD 119
           +A+K    +G                  +++SSG  ++ +N  G PSPR   RRYKLLKD
Sbjct: 98  SAKKSSSGYGTGITNRSEYSGDKIKQQDREESSGSAEKGKNPSGTPSPRPTTRRYKLLKD 157

[Close]

BLAST of CmaCh06G009630 vs. TrEMBL
Match: A0A067K1B1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14584 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-25
Identity = 63/122 (51.64%), Postives = 79/122 (64.75%), Query Frame = 1


Query: 15  LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRCGRRGS 74
           L  VCC+CGDVGFP  LFRC+ C HRFQHSYCSNYY E +E I +CDWC+ E R  R G+
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCSKCRHRFQHSYCSNYYSELSEPIGLCDWCQSEERNARHGN 63

Query: 75  AARKF-------GVASQKKSSG-----QDKRE------RNSGGMPSPRVAPRRYKLLKDV 119
           +++K        GV ++ + SG      D+ E      ++  G+PSPR A RRYKLLKDV
Sbjct: 64  SSKKSVAGHDSGGVTNRSEYSGDKIKQHDREEGAAEKGKSPSGVPSPRTATRRYKLLKDV 123

[Close]

BLAST of CmaCh06G009630 vs. TAIR10
Match: AT3G60520.1 (AT3G60520.1 unknown protein)

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-23
Identity = 56/122 (45.90%), Postives = 71/122 (58.20%), Query Frame = 1


Query: 18  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCE--RRCGRR--- 77
           VCC+CGDVGF   LF C+ C +RFQHSYCS+YY E A+ I++CDWC+CE   R G +   
Sbjct: 8   VCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPIKICDWCQCEAKSRTGAKHGV 67

Query: 78  --GSAARKF--------------GVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDV 119
             GS+ R +               +     SS     ++   G+PSPR A RRYKLLKDV
Sbjct: 68  NGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRRYKLLKDV 127

[Close]

BLAST of CmaCh06G009630 vs. TAIR10
Match: AT1G02070.1 (AT1G02070.1 unknown protein)

HSP 1 Score: 104.4 bits (259), Expect = 5.0e-23
Identity = 59/130 (45.38%), Postives = 71/130 (54.62%), Query Frame = 1


Query: 18  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRCGRRGSAAR 77
           VCC+CGDVGF   LF C  C  RFQHSYCSNYYG+ AE  E+CDWCR + R  +  + AR
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEPTEICDWCRSDDR--KLSNVAR 63

Query: 78  KFGVASQKKSS----------------GQDKRERNS-------------GGMPSPRVAPR 119
             G +S+K SS                G   +  N+             GG+ SP+ A R
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 123

[Close]

BLAST of CmaCh06G009630 vs. NCBI nr
Match: gi|659074774|ref|XP_008437789.1| (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 3.7e-28
Identity = 68/105 (64.76%), Postives = 79/105 (75.24%), Query Frame = 1


Query: 16  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GESAEA-IEVCDWCRCERRCGRRG 75
           PP+CCLCGDVGFPANLFRCT CS+RFQHSYCSNYY GES +A I VCDWCR E+R  RR 
Sbjct: 45  PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT-RRP 104

Query: 76  SAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
           +A   F   + +K     +   ++ G+PSPR APRRYKLLKDVMC
Sbjct: 105 AA---FATTTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of CmaCh06G009630 vs. NCBI nr
Match: gi|449433002|ref|XP_004134287.1| (PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 4.8e-28
Identity = 67/105 (63.81%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 16  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GESAEA-IEVCDWCRCERRCGRRG 75
           PP+CCLCGDVGFPA LFRCT CS+RFQHSYCSNYY GES +A I VCDWCR E+R  R  
Sbjct: 5   PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPA 64

Query: 76  SAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
                F   + +KS+   +R  ++ G+PSPR APRRYKLLKDVMC
Sbjct: 65  -----FASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of CmaCh06G009630 vs. NCBI nr
Match: gi|590723505|ref|XP_007052203.1| (Late cornified envelope protein 1E [Theobroma cacao])

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-27
Identity = 65/120 (54.17%), Postives = 76/120 (63.33%), Query Frame = 1


Query: 15  LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRCGRRGS 74
           L  VCC+CGDVGFP  LFRC  C HRFQHSYCSNYY E AE IE+CDWC+ E R  R GS
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSELAEPIELCDWCQSEERSSRHGS 63

Query: 75  AARK------FGVASQKKSSGQDK----------RERNSGGMPSPRVAPRRYKLLKDVMC 119
           +++K       G+ ++ + SG DK           +  S G PSPR   RRYKLLKDVMC
Sbjct: 64  SSKKSSTGNETGITNRSEYSGTDKIKQQDRDESAEKGKSSGTPSPRPTTRRYKLLKDVMC 123

[Close]

BLAST of CmaCh06G009630 vs. NCBI nr
Match: gi|698485722|ref|XP_009789630.1| (PREDICTED: uncharacterized protein LOC104237216 [Nicotiana sylvestris])

HSP 1 Score: 125.9 bits (315), Expect = 4.5e-26
Identity = 63/118 (53.39%), Postives = 76/118 (64.41%), Query Frame = 1


Query: 18  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRCGRRGSAAR 77
           VC +CGDVGFP  LFRC  C HRFQHSYCSNYY ES+E I+VCDWC+ E +  R G ++R
Sbjct: 55  VCSMCGDVGFPDKLFRCAKCHHRFQHSYCSNYYSESSEPIQVCDWCQSEEKSSRHGGSSR 114

Query: 78  K-------FGVASQ----------KKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
           K        G+ S+          ++ SG + R +N  G PSPR A RRYKLLKDVMC
Sbjct: 115 KSIAGISNSGIKSEYSGDKIKQNDREESGAE-RAKNPSGTPSPRTATRRYKLLKDVMC 171

[Close]

BLAST of CmaCh06G009630 vs. NCBI nr
Match: gi|641866960|gb|KDO85644.1| (hypothetical protein CISIN_1g033128mg [Citrus sinensis])

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-25
Identity = 63/123 (51.22%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 15  LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRCGRRGS 74
           L  VCC+CGDVGFP  LFRC  C +R QHSYCSNYY E AE IE+CDWC+ E R  R GS
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCNKCRNRIQHSYCSNYYSEFAEPIEMCDWCQSEERSSRLGS 63

Query: 75  AARK----FGVA---------------SQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKD 119
           +A+K    +G                  +++SSG  ++ +N  G PSPR   RRYKLLKD
Sbjct: 64  SAKKSSSGYGTGITNRSEYSGDKIKQQDREESSGSAEKGKNPSGTPSPRPTTRRYKLLKD 123

The following BLAST results are available for this feature:

BLAST of CmaCh06G009630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G009630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5P1_CUCSA	3.4e-28	63.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1	[more]
A0A061DUE3_THECC	1.7e-27	54.17	Late cornified envelope protein 1E OS=Theobroma cacao GN=TCM_005618 PE=4 SV=1	[more]
A0A067H1B5_CITSI	7.0e-26	51.22	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033128mg PE=4 SV=1	[more]
V4TE16_9ROSI	7.0e-26	51.22	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022623mg PE=4 SV=1	[more]
A0A067K1B1_JATCU	1.2e-25	51.64	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14584 PE=4 SV=1	[more]

BLAST of CmaCh06G009630 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60520.1	2.9e-23	45.90	unknown protein	[more]
AT1G02070.1	5.0e-23	45.38	unknown protein	[more]

BLAST of CmaCh06G009630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074774\|ref\|XP_008437789.1\|	3.7e-28	64.76	PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]	[more]
gi\|449433002\|ref\|XP_004134287.1\|	4.8e-28	63.81	PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus]	[more]
gi\|590723505\|ref\|XP_007052203.1\|	2.4e-27	54.17	Late cornified envelope protein 1E [Theobroma cacao]	[more]
gi\|698485722\|ref\|XP_009789630.1\|	4.5e-26	53.39	PREDICTED: uncharacterized protein LOC104237216 [Nicotiana sylvestris]	[more]
gi\|641866960\|gb\|KDO85644.1\|	1.0e-25	51.22	hypothetical protein CISIN_1g033128mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G009630.1	CmaCh06G009630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33779	FAMILY NOT NAMED	coord: 18..118 score: 1.4
None	No IPR available	PANTHER	PTHR33779:SF2	SUBFAMILY NOT NAMED	coord: 18..118 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G009630	Cucsa.259820	Cucumber (Gy14) v1	cgycmaB0728
CmaCh06G009630	Csa3G117940	Cucumber (Chinese Long) v2	cmacuB818
CmaCh06G009630	MELO3C005964	Melon (DHL92) v3.5.1	cmameB766
CmaCh06G009630	ClCG05G000270	Watermelon (Charleston Gray)	cmawcgB738
CmaCh06G009630	CSPI03G07300	Wild cucumber (PI 183967)	cmacpiB830
CmaCh06G009630	CmoCh06G009850	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G009630	CmoCh14G022240	Cucurbita moschata (Rifu)	cmacmoB799
CmaCh06G009630	Lsi05G022010	Bottle gourd (USVL1VR-Ls)	cmalsiB766
CmaCh06G009630	Cp4.1LG03g15810	Cucurbita pepo (Zucchini)	cmacpeB839
CmaCh06G009630	MELO3C005964.2	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G009630	CsaV3_3G007420	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G009630	CsGy3G007440	Cucumber (Gy14) v2	cgybcmaB430
CmaCh06G009630	Carg24170	Silver-seed gourd	carcmaB0128
CmaCh06G009630	Carg17678	Silver-seed gourd	carcmaB0177

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G009630	Watermelon (97103) v2	cmawmbB857
CmaCh06G009630	Wax gourd	cmawgoB1017
CmaCh06G009630	Cucurbita maxima (Rimu)	cmacmaB287
CmaCh06G009630	Watermelon (97103) v1	cmawmB799
CmaCh06G009630	Cucurbita pepo (Zucchini)	cmacpeB855