ClCG05G000270 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G000270
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Zinc ion binding protein
Location	CG_Chr05 : 447192 .. 447710 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGAATCCCCCACCCCCACTCTGTTGCTTGTGCGGCGACGTTGGTTTTCCAGCCAAACTCTTCCGCTGCGTTAGCTGCTCCACTCGATTCCAGCACTCGTAACACACGCATCCCCATTCCACTTGTGTCCTTTTAATTACATGCCTATTTTCTTAAAACTTACATTTTGTAATTACTTCAGTTACTGCAGCAACTTCTACTGTGGGGATCAATCGGGGGATCCCATACTTCAAATATGCGATTGGTGTCGAAGCCAACAGATAACCCGCCGCCCTGCCTCTACAACTGCGACTAATAATACCGGTACTACCTCCCACAAGGATCAGATCACGCAAAGAAGAAGCTCCGGCCCCGGATTCCCCTCCCCTCGCCCTGCTCCACGCCGCTACAAGCTCCTCAAGGATGTCTTGTGCTGAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATATATGATCTTAATCTAATACTGTATGTGTATCTCGCTTTTCCAAATTATATATCAACAAAC

mRNA sequence

ATGGATTTGAATCCCCCACCCCCACTCTGTTGCTTGTGCGGCGACGTTGGTTTTCCAGCCAAACTCTTCCGCTGCGTTAGCTGCTCCACTCGATTCCAGCACTCTTACTGCAGCAACTTCTACTGTGGGGATCAATCGGGGGATCCCATACTTCAAATATGCGATTGGTGTCGAAGCCAACAGATAACCCGCCGCCCTGCCTCTACAACTGCGACTAATAATACCGGTACTACCTCCCACAAGGATCAGATCACGCAAAGAAGAAGCTCCGGCCCCGGATTCCCCTCCCCTCGCCCTGCTCCACGCCGCTACAAGCTCCTCAAGGATGTCTTGTGCTGAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATATATGATCTTAATCTAATACTGTATGTGTATCTCGCTTTTCCAAATTATATATCAACAAAC

Coding sequence (CDS)

ATGGATTTGAATCCCCCACCCCCACTCTGTTGCTTGTGCGGCGACGTTGGTTTTCCAGCCAAACTCTTCCGCTGCGTTAGCTGCTCCACTCGATTCCAGCACTCTTACTGCAGCAACTTCTACTGTGGGGATCAATCGGGGGATCCCATACTTCAAATATGCGATTGGTGTCGAAGCCAACAGATAACCCGCCGCCCTGCCTCTACAACTGCGACTAATAATACCGGTACTACCTCCCACAAGGATCAGATCACGCAAAGAAGAAGCTCCGGCCCCGGATTCCCCTCCCCTCGCCCTGCTCCACGCCGCTACAAGCTCCTCAAGGATGTCTTGTGCTGA

Protein sequence

MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKDQITQRRSSGPGFPSPRPAPRRYKLLKDVLC

Homology

[Close]

BLAST of ClCG05G000270 vs. TrEMBL
Match: A0A0A0L5P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 7.6e-38
Identity = 79/113 (69.91%), Postives = 91/113 (80.53%), Query Frame = 1


Query: 1   MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
           MDLNPP  LCCLCGDVGFPAKLFRC +CS RFQHSYCSN+YCG +SGD  +++CDWCRS+
Sbjct: 1   MDLNPP--LCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCG-ESGDATIRVCDWCRSE 60

Query: 61  QITRRPASTTATNNTGTTSHK-DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
           Q T RPA  +      TTS K ++IT+RRSS  G PSPRPAPRRYKLLKDV+C
Sbjct: 61  QRTCRPAFAS------TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of ClCG05G000270 vs. TrEMBL
Match: A0A022RQV6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016574mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-22
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 9   LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPAS 68
           +CCLCGDVGF  KLFRC  C TRFQHSYCSN+ C + +   +LQ+CDWCR  +     +S
Sbjct: 7   VCCLCGDVGFSDKLFRCSKCLTRFQHSYCSNYNCREYAEAAVLQVCDWCRCDEREYNISS 66

Query: 69  TTATNNTGTTSHK----DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
           +   N+   + +      Q T  +S+G   PSPRP+ RRYKLLKDV+C
Sbjct: 67  SKNNNSHIRSPYSGEKIKQQTPEKSTGK-LPSPRPSARRYKLLKDVMC 113

[Close]

BLAST of ClCG05G000270 vs. TrEMBL
Match: A0A061DUE3_THECC (Late cornified envelope protein 1E OS=Theobroma cacao GN=TCM_005618 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 56/120 (46.67%), Postives = 75/120 (62.50%), Query Frame = 1


Query: 9   LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPAS 68
           +CC+CGDVGFP KLFRC  C  RFQHSYCSN+Y   +  +PI ++CDWC+S++ + R  S
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYY--SELAEPI-ELCDWCQSEERSSRHGS 66

Query: 69  TTATNNTGTT---------SHKDQITQR-------RSSGPGFPSPRPAPRRYKLLKDVLC 113
           ++  ++TG           S  D+I Q+       +    G PSPRP  RRYKLLKDV+C
Sbjct: 67  SSKKSSTGNETGITNRSEYSGTDKIKQQDRDESAEKGKSSGTPSPRPTTRRYKLLKDVMC 123

[Close]

BLAST of ClCG05G000270 vs. TrEMBL
Match: A0A151SFZ5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_024232 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.5e-21
Identity = 55/124 (44.35%), Postives = 70/124 (56.45%), Query Frame = 1


Query: 9   LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGD-PILQICDWCRSQQ-----I 68
           +CC+CGDVGFP KLFRC  C  RFQHSYCSN+Y     G+ P +++CDWC+S++     I
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRNRFQHSYCSNYY-----GELPEIELCDWCQSEEKNVRHI 66

Query: 69  TRRPASTTATNNTGTT--------------SHKDQITQRRSSGPGFPSPRPAPRRYKLLK 113
                 T   N  G T               H+D+    + + P  PSPRP  RRYKLLK
Sbjct: 67  GSNSKKTVVGNEVGATHRSEYSGEKMIKQHDHRDESGSEKGTSP-TPSPRPGARRYKLLK 124

[Close]

BLAST of ClCG05G000270 vs. TrEMBL
Match: A0A0B0MQZ3_GOSAR (Potassium voltage-gated channel subfamily C member 4 OS=Gossypium arboreum GN=F383_30050 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.5e-21
Identity = 56/121 (46.28%), Postives = 70/121 (57.85%), Query Frame = 1


Query: 9   LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPAS 68
           +CC+CGDVGFP KLFRC  C  RFQHSYCSN+Y   +  +PI ++CDWC+S+    R   
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYY--SEFAEPI-ELCDWCQSEAKNSRQGR 66

Query: 69  TTATNNTGTTS----------HKDQITQRRSSG-------PGFPSPRPAPRRYKLLKDVL 113
           ++    TG  S           K ++  R  SG        G PSPRP  RRYKLLKDV+
Sbjct: 67  SSKKPTTGNESGIINRSEYSGDKIKLQDRDESGDHQKGKSSGTPSPRPTTRRYKLLKDVM 124

[Close]

BLAST of ClCG05G000270 vs. TAIR10
Match: AT3G60520.1 (AT3G60520.1 unknown protein)

HSP 1 Score: 100.1 bits (248), Expect = 8.9e-22
Identity = 54/125 (43.20%), Postives = 66/125 (52.80%), Query Frame = 1


Query: 9   LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPAS 68
           +CC+CGDVGF  KLF C  C  RFQHSYCS++Y   +  DPI +ICDWC+ +  +R  A 
Sbjct: 8   VCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYY--KEQADPI-KICDWCQCEAKSRTGAK 67

Query: 69  TTATNNTGTTSHK------------DQITQRRSSG---------PGFPSPRPAPRRYKLL 113
                 +   S++             +I Q  SS           G PSPRPA RRYKLL
Sbjct: 68  HGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRRYKLL 127

[Close]

BLAST of ClCG05G000270 vs. TAIR10
Match: AT1G02070.1 (AT1G02070.1 unknown protein)

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-19
Identity = 52/131 (39.69%), Postives = 65/131 (49.62%), Query Frame = 1


Query: 9   LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ-------- 68
           +CC+CGDVGF  KLF C  C  RFQHSYCSN+Y   Q  +P  +ICDWCRS         
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYY--GQFAEP-TEICDWCRSDDRKLSNVA 63

Query: 69  ----QITRRPASTTATNN--------------TGTTSHKDQITQR-RSSGPGFPSPRPAP 113
                 +++P+S+    N                  +  DQ+ +     G G  SP+ A 
Sbjct: 64  RHGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTAT 123

[Close]

BLAST of ClCG05G000270 vs. NCBI nr
Match: gi|449433002|ref|XP_004134287.1| (PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-37
Identity = 79/113 (69.91%), Postives = 91/113 (80.53%), Query Frame = 1


Query: 1   MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
           MDLNPP  LCCLCGDVGFPAKLFRC +CS RFQHSYCSN+YCG +SGD  +++CDWCRS+
Sbjct: 1   MDLNPP--LCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCG-ESGDATIRVCDWCRSE 60

Query: 61  QITRRPASTTATNNTGTTSHK-DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
           Q T RPA  +      TTS K ++IT+RRSS  G PSPRPAPRRYKLLKDV+C
Sbjct: 61  QRTCRPAFAS------TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of ClCG05G000270 vs. NCBI nr
Match: gi|659074774|ref|XP_008437789.1| (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 2.4e-37
Identity = 79/113 (69.91%), Postives = 90/113 (79.65%), Query Frame = 1


Query: 1   MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
           MDLNPP  LCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+
Sbjct: 41  MDLNPP--LCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSG-ESGDAIIRVCDWCRSE 100

Query: 61  QITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
           Q TRRPA+        TTS KD +IT+ RSS  G PSPRPAPRRYKLLKDV+C
Sbjct: 101 QRTRRPAAFAT-----TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of ClCG05G000270 vs. NCBI nr
Match: gi|848861144|ref|XP_012831396.1| (PREDICTED: uncharacterized protein LOC105952400 [Erythranthe guttata])

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 9   LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPAS 68
           +CCLCGDVGF  KLFRC  C TRFQHSYCSN+ C + +   +LQ+CDWCR  +     +S
Sbjct: 7   VCCLCGDVGFSDKLFRCSKCLTRFQHSYCSNYNCREYAEAAVLQVCDWCRCDEREYNISS 66

Query: 69  TTATNNTGTTSHK----DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
           +   N+   + +      Q T  +S+G   PSPRP+ RRYKLLKDV+C
Sbjct: 67  SKNNNSHIRSPYSGEKIKQQTPEKSTGK-LPSPRPSARRYKLLKDVMC 113

[Close]

BLAST of ClCG05G000270 vs. NCBI nr
Match: gi|590723505|ref|XP_007052203.1| (Late cornified envelope protein 1E [Theobroma cacao])

HSP 1 Score: 112.5 bits (280), Expect = 4.9e-22
Identity = 56/120 (46.67%), Postives = 75/120 (62.50%), Query Frame = 1


Query: 9   LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPAS 68
           +CC+CGDVGFP KLFRC  C  RFQHSYCSN+Y   +  +PI ++CDWC+S++ + R  S
Sbjct: 7   VCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYY--SELAEPI-ELCDWCQSEERSSRHGS 66

Query: 69  TTATNNTGTT---------SHKDQITQR-------RSSGPGFPSPRPAPRRYKLLKDVLC 113
           ++  ++TG           S  D+I Q+       +    G PSPRP  RRYKLLKDV+C
Sbjct: 67  SSKKSSTGNETGITNRSEYSGTDKIKQQDRDESAEKGKSSGTPSPRPTTRRYKLLKDVMC 123

[Close]

BLAST of ClCG05G000270 vs. NCBI nr
Match: gi|659134040|ref|XP_008467003.1| (PREDICTED: uncharacterized protein LOC103504413 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 9.3e-21
Identity = 59/130 (45.38%), Postives = 73/130 (56.15%), Query Frame = 1


Query: 9   LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ-------- 68
           +CC+CGD+GFP KLF C  C  RFQHSYCSN+Y   +S +PI ++CDWC+ +        
Sbjct: 7   VCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYY--SESAEPI-EVCDWCQCEGRSTSSRS 66

Query: 69  ---QITRRPASTTATNNTGTTS-------------HKDQITQRRSSG--PGFPSPRPAPR 113
                +RRP S T TN TG  S             H D  T++   G     PSPRP  R
Sbjct: 67  HGSSSSRRPPS-TGTNATGIMSRSEYSSDKLIKHHHDDSPTEKGKHGGAGSTPSPRPTTR 126

The following BLAST results are available for this feature:

BLAST of ClCG05G000270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5P1_CUCSA	7.6e-38	69.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1	[more]
A0A022RQV6_ERYGU	1.5e-22	50.00	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016574mg PE=4 SV=1	[more]
A0A061DUE3_THECC	3.4e-22	46.67	Late cornified envelope protein 1E OS=Theobroma cacao GN=TCM_005618 PE=4 SV=1	[more]
A0A151SFZ5_CAJCA	8.5e-21	44.35	Uncharacterized protein OS=Cajanus cajan GN=KK1_024232 PE=4 SV=1	[more]
A0A0B0MQZ3_GOSAR	8.5e-21	46.28	Potassium voltage-gated channel subfamily C member 4 OS=Gossypium arboreum GN=F3...	[more]

BLAST of ClCG05G000270 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60520.1	8.9e-22	43.20	unknown protein	[more]
AT1G02070.1	2.4e-19	39.69	unknown protein	[more]

BLAST of ClCG05G000270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433002\|ref\|XP_004134287.1\|	1.1e-37	69.91	PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus]	[more]
gi\|659074774\|ref\|XP_008437789.1\|	2.4e-37	69.91	PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]	[more]
gi\|848861144\|ref\|XP_012831396.1\|	2.2e-22	50.00	PREDICTED: uncharacterized protein LOC105952400 [Erythranthe guttata]	[more]
gi\|590723505\|ref\|XP_007052203.1\|	4.9e-22	46.67	Late cornified envelope protein 1E [Theobroma cacao]	[more]
gi\|659134040\|ref\|XP_008467003.1\|	9.3e-21	45.38	PREDICTED: uncharacterized protein LOC103504413 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0019031	viral envelope
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G000270.1	ClCG05G000270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33779	FAMILY NOT NAMED	coord: 10..112 score: 1.5
None	No IPR available	PANTHER	PTHR33779:SF2	SUBFAMILY NOT NAMED	coord: 10..112 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G000270	Csa3G117940	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G000270	MELO3C005964	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G000270	CSPI03G07300	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G000270	Cucsa.259820	Cucumber (Gy14) v1	cgywcgB451
ClCG05G000270	CmaCh06G009630	Cucurbita maxima (Rimu)	cmawcgB738
ClCG05G000270	CmoCh06G009850	Cucurbita moschata (Rifu)	cmowcgB743
ClCG05G000270	CmoCh14G022240	Cucurbita moschata (Rifu)	cmowcgB219
ClCG05G000270	Lsi05G022010	Bottle gourd (USVL1VR-Ls)	lsiwcgB335
ClCG05G000270	Cp4.1LG03g15810	Cucurbita pepo (Zucchini)	cpewcgB559
ClCG05G000270	CsGy3G007440	Cucumber (Gy14) v2	cgybwcgB203
ClCG05G000270	MELO3C005964.2	Melon (DHL92) v3.6.1	medwcgB416
ClCG05G000270	Carg24170	Silver-seed gourd	carwcgB0096
ClCG05G000270	Carg17678	Silver-seed gourd	carwcgB0128
ClCG05G000270	CsaV3_3G007420	Cucumber (Chinese Long) v3	cucwcgB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G000270	Wax gourd	wcgwgoB439
ClCG05G000270	Cucurbita maxima (Rimu)	cmawcgB233
ClCG05G000270	Watermelon (97103) v1	wcgwmB286
ClCG05G000270	Cucurbita pepo (Zucchini)	cpewcgB787
ClCG05G000270	Watermelon (97103) v2	wcgwmbB229