CmoCh06G009850 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G009850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc ion-binding protein
Location	Cmo_Chr06 : 7776655 .. 7777481 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTGGCAAAAATAAATCCCCAATTAAGGTCCACACGCCCCTTCTCCTCTCTCCTCTCCGCCCCTTCCGCCTCTCTGCCTCCTCCCCGAAAGAGACCTCTCCGCCCCCTCTCTCTCCCTCTTATTTAACCCCCCCTCTCCCCTCTCCCCCTCAATCATCAACATGGCTTCACATCATCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCGTAAGAATCCCTTAATTTTAATTCTTTTATTGTTGTGCTAGAATGTTTGTTTAATCCATCCCACCGTAATTTAAAAATTATCTTAAATAAATTAAGCAAAGAGACAGAAAAAAGATTCTTGGTACAAGAATCTAATAAAATACAGTGAACTATAATTTATTACTAAATATCTATTGTTTCGATTAATGGTGATGTTGGGGTTTGGTTCAGTTATTGCAGTAACTATTACGGCGAAATGGCAGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAAACGTTGTTATTGTTCCAGAAATTTTGAATTTCTCATACAAATATTTTAAGCTTAATAAATATAAATATTTATAAATTTATACTTTTCCAAAAAATATCAATTTTTTTTTTAATGTTTGA

mRNA sequence

GCCTGGCAAAAATAAATCCCCAATTAAGGTCCACACGCCCCTTCTCCTCTCTCCTCTCCGCCCCTTCCGCCTCTCTGCCTCCTCCCCGAAAGAGACCTCTCCGCCCCCTCTCTCTCCCTCTTATTTAACCCCCCCTCTCCCCTCTCCCCCTCAATCATCAACATGGCTTCACATCATCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCTTATTGCAGTAACTATTACGGCGAAATGGCAGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAAACGTTGTTATTGTTCCAGAAATTTTGAATTTCTCATACAAATATTTTAAGCTTAATAAATATAAATATTTATAAATTTATACTTTTCCAAAAAATATCAATTTTTTTTTTAATGTTTGA

Coding sequence (CDS)

ATGGCTTCACATCATCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCTTATTGCAGTAACTATTACGGCGAAATGGCAGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA

Homology

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BLAST of CmoCh06G009850 vs. TrEMBL
Match: A0A0A0L5P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 9.2e-28
Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 10  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GEMAEA-IEACDWCRCERRCGRRG 69
           PP+CCLCGDVGFPA LFRCT CS+RFQHSYCSNYY GE  +A I  CDWCR E+R  R  
Sbjct: 5   PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPA 64

Query: 70  SAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
            A+      SQKS+   +R  ++ G+PSPR APRRYKLLKDVMC
Sbjct: 65  FAS----TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of CmoCh06G009850 vs. TrEMBL
Match: A0A061DUE3_THECC (Late cornified envelope protein 1E OS=Theobroma cacao GN=TCM_005618 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.6e-27
Identity = 65/120 (54.17%), Postives = 75/120 (62.50%), Query Frame = 1


Query: 9   LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGS 68
           L  VCC+CGDVGFP  LFRC  C HRFQHSYCSNYY E+AE IE CDWC+ E R  R GS
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSELAEPIELCDWCQSEERSSRHGS 63

Query: 69  AARKSGVASQ-------KSSGQDK----------RERNSGGMPSPRVAPRRYKLLKDVMC 112
           +++KS   ++       + SG DK           +  S G PSPR   RRYKLLKDVMC
Sbjct: 64  SSKKSSTGNETGITNRSEYSGTDKIKQQDRDESAEKGKSSGTPSPRPTTRRYKLLKDVMC 123

[Close]

BLAST of CmoCh06G009850 vs. TrEMBL
Match: A0A067K1B1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14584 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 65/123 (52.85%), Postives = 75/123 (60.98%), Query Frame = 1


Query: 9   LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGS 68
           L  VCC+CGDVGFP  LFRC+ C HRFQHSYCSNYY E++E I  CDWC+ E R  R G+
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCSKCRHRFQHSYCSNYYSELSEPIGLCDWCQSEERNARHGN 63

Query: 69  AARKSGVASQKSSGQDKRERNSG--------------------GMPSPRVAPRRYKLLKD 112
           +++KS VA   S G   R   SG                    G+PSPR A RRYKLLKD
Sbjct: 64  SSKKS-VAGHDSGGVTNRSEYSGDKIKQHDREEGAAEKGKSPSGVPSPRTATRRYKLLKD 123

[Close]

BLAST of CmoCh06G009850 vs. TrEMBL
Match: A0A067H1B5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033128mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.1e-26
Identity = 64/123 (52.03%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 9   LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGS 68
           L  VCC+CGDVGFP  LFRC  C +R QHSYCSNYY E AE IE CDWC+ E R  R GS
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCNKCRNRIQHSYCSNYYSEFAEPIEMCDWCQSEERSSRLGS 63

Query: 69  AARKS------GVAS--------------QKSSGQDKRERNSGGMPSPRVAPRRYKLLKD 112
           +A+KS      G+ +              ++SSG  ++ +N  G PSPR   RRYKLLKD
Sbjct: 64  SAKKSSSGYGTGITNRSEYSGDKIKQQDREESSGSAEKGKNPSGTPSPRPTTRRYKLLKD 123

[Close]

BLAST of CmoCh06G009850 vs. TrEMBL
Match: V4TE16_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022623mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.1e-26
Identity = 64/123 (52.03%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 9   LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGS 68
           L  VCC+CGDVGFP  LFRC  C +R QHSYCSNYY E AE IE CDWC+ E R  R GS
Sbjct: 38  LQTVCCMCGDVGFPDKLFRCNKCRNRIQHSYCSNYYSEFAEPIEMCDWCQSEERSSRLGS 97

Query: 69  AARKS------GVAS--------------QKSSGQDKRERNSGGMPSPRVAPRRYKLLKD 112
           +A+KS      G+ +              ++SSG  ++ +N  G PSPR   RRYKLLKD
Sbjct: 98  SAKKSSSGYGTGITNRSEYSGDKIKQQDREESSGSAEKGKNPSGTPSPRPTTRRYKLLKD 157

[Close]

BLAST of CmoCh06G009850 vs. TAIR10
Match: AT1G02070.1 (AT1G02070.1 unknown protein)

HSP 1 Score: 104.0 bits (258), Expect = 6.1e-23
Identity = 58/130 (44.62%), Postives = 68/130 (52.31%), Query Frame = 1


Query: 12  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGSAAR 71
           VCC+CGDVGF   LF C  C  RFQHSYCSNYYG+ AE  E CDWCR + R  +  + AR
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEPTEICDWCRSDDR--KLSNVAR 63

Query: 72  KSGVASQKSSGQDKRER------------------------------NSGGMPSPRVAPR 112
             G +S+K S   K E                               + GG+ SP+ A R
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 123

[Close]

BLAST of CmoCh06G009850 vs. TAIR10
Match: AT3G60520.1 (AT3G60520.1 unknown protein)

HSP 1 Score: 102.4 bits (254), Expect = 1.8e-22
Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 1


Query: 12  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGSAAR 71
           VCC+CGDVGF   LF C+ C +RFQHSYCS+YY E A+ I+ CDWC+CE +  R G+   
Sbjct: 8   VCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPIKICDWCQCEAK-SRTGAKHG 67

Query: 72  KSGVASQK-----------------------SSGQDKRERNSGGMPSPRVAPRRYKLLKD 112
            +G +S++                       SS     ++   G+PSPR A RRYKLLKD
Sbjct: 68  VNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRRYKLLKD 127

[Close]

BLAST of CmoCh06G009850 vs. NCBI nr
Match: gi|449433002|ref|XP_004134287.1| (PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-27
Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 10  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GEMAEA-IEACDWCRCERRCGRRG 69
           PP+CCLCGDVGFPA LFRCT CS+RFQHSYCSNYY GE  +A I  CDWCR E+R  R  
Sbjct: 5   PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPA 64

Query: 70  SAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
            A+      SQKS+   +R  ++ G+PSPR APRRYKLLKDVMC
Sbjct: 65  FAS----TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of CmoCh06G009850 vs. NCBI nr
Match: gi|659074774|ref|XP_008437789.1| (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 5.0e-27
Identity = 66/104 (63.46%), Postives = 75/104 (72.12%), Query Frame = 1


Query: 10  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GEMAEA-IEACDWCRCERRCGRRG 69
           PP+CCLCGDVGFPANLFRCT CS+RFQHSYCSNYY GE  +A I  CDWCR E+R  R  
Sbjct: 45  PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRTRRPA 104

Query: 70  SAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 112
           + A      SQK     +   ++ G+PSPR APRRYKLLKDVMC
Sbjct: 105 AFAT---TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of CmoCh06G009850 vs. NCBI nr
Match: gi|590723505|ref|XP_007052203.1| (Late cornified envelope protein 1E [Theobroma cacao])

HSP 1 Score: 128.6 bits (322), Expect = 6.6e-27
Identity = 65/120 (54.17%), Postives = 75/120 (62.50%), Query Frame = 1


Query: 9   LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGS 68
           L  VCC+CGDVGFP  LFRC  C HRFQHSYCSNYY E+AE IE CDWC+ E R  R GS
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCNKCRHRFQHSYCSNYYSELAEPIELCDWCQSEERSSRHGS 63

Query: 69  AARKSGVASQ-------KSSGQDK----------RERNSGGMPSPRVAPRRYKLLKDVMC 112
           +++KS   ++       + SG DK           +  S G PSPR   RRYKLLKDVMC
Sbjct: 64  SSKKSSTGNETGITNRSEYSGTDKIKQQDRDESAEKGKSSGTPSPRPTTRRYKLLKDVMC 123

[Close]

BLAST of CmoCh06G009850 vs. NCBI nr
Match: gi|802700216|ref|XP_012083643.1| (PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas])

HSP 1 Score: 125.9 bits (315), Expect = 4.3e-26
Identity = 65/123 (52.85%), Postives = 75/123 (60.98%), Query Frame = 1


Query: 9   LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGS 68
           L  VCC+CGDVGFP  LFRC+ C HRFQHSYCSNYY E++E I  CDWC+ E R  R G+
Sbjct: 4   LQTVCCMCGDVGFPDKLFRCSKCRHRFQHSYCSNYYSELSEPIGLCDWCQSEERNARHGN 63

Query: 69  AARKSGVASQKSSGQDKRERNSG--------------------GMPSPRVAPRRYKLLKD 112
           +++KS VA   S G   R   SG                    G+PSPR A RRYKLLKD
Sbjct: 64  SSKKS-VAGHDSGGVTNRSEYSGDKIKQHDREEGAAEKGKSPSGVPSPRTATRRYKLLKD 123

[Close]

BLAST of CmoCh06G009850 vs. NCBI nr
Match: gi|567905710|ref|XP_006445343.1| (hypothetical protein CICLE_v10022623mg [Citrus clementina])

HSP 1 Score: 125.2 bits (313), Expect = 7.3e-26
Identity = 64/123 (52.03%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 9   LPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCRCERRCGRRGS 68
           L  VCC+CGDVGFP  LFRC  C +R QHSYCSNYY E AE IE CDWC+ E R  R GS
Sbjct: 38  LQTVCCMCGDVGFPDKLFRCNKCRNRIQHSYCSNYYSEFAEPIEMCDWCQSEERSSRLGS 97

Query: 69  AARKS------GVAS--------------QKSSGQDKRERNSGGMPSPRVAPRRYKLLKD 112
           +A+KS      G+ +              ++SSG  ++ +N  G PSPR   RRYKLLKD
Sbjct: 98  SAKKSSSGYGTGITNRSEYSGDKIKQQDREESSGSAEKGKNPSGTPSPRPTTRRYKLLKD 157

The following BLAST results are available for this feature:

BLAST of CmoCh06G009850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G009850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5P1_CUCSA	9.2e-28	64.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1	[more]
A0A061DUE3_THECC	4.6e-27	54.17	Late cornified envelope protein 1E OS=Theobroma cacao GN=TCM_005618 PE=4 SV=1	[more]
A0A067K1B1_JATCU	3.0e-26	52.85	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14584 PE=4 SV=1	[more]
A0A067H1B5_CITSI	5.1e-26	52.03	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033128mg PE=4 SV=1	[more]
V4TE16_9ROSI	5.1e-26	52.03	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022623mg PE=4 SV=1	[more]

BLAST of CmoCh06G009850 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02070.1	6.1e-23	44.62	unknown protein	[more]
AT3G60520.1	1.8e-22	44.72	unknown protein	[more]

BLAST of CmoCh06G009850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433002\|ref\|XP_004134287.1\|	1.3e-27	64.42	PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus]	[more]
gi\|659074774\|ref\|XP_008437789.1\|	5.0e-27	63.46	PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]	[more]
gi\|590723505\|ref\|XP_007052203.1\|	6.6e-27	54.17	Late cornified envelope protein 1E [Theobroma cacao]	[more]
gi\|802700216\|ref\|XP_012083643.1\|	4.3e-26	52.85	PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]	[more]
gi\|567905710\|ref\|XP_006445343.1\|	7.3e-26	52.03	hypothetical protein CICLE_v10022623mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G009850.1	CmoCh06G009850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33779	FAMILY NOT NAMED	coord: 12..111 score: 3.8
None	No IPR available	PANTHER	PTHR33779:SF2	SUBFAMILY NOT NAMED	coord: 12..111 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G009850	Cucsa.259820	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G009850	CmaCh06G009630	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G009850	Csa3G117940	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G009850	MELO3C005964	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G009850	ClCG05G000270	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G009850	CSPI03G07300	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G009850	Lsi05G022010	Bottle gourd (USVL1VR-Ls)	cmolsiB758
CmoCh06G009850	Cp4.1LG03g15810	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G009850	MELO3C005964.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G009850	CsaV3_3G007420	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G009850	CsGy3G007440	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G009850	Carg24170	Silver-seed gourd	carcmoB0137
CmoCh06G009850	Carg17678	Silver-seed gourd	carcmoB0185

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G009850	CmoCh14G022240	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G009850	Watermelon (97103) v2	cmowmbB833
CmoCh06G009850	Wax gourd	cmowgoB1013
CmoCh06G009850	Cucurbita maxima (Rimu)	cmacmoB017
CmoCh06G009850	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G009850	Watermelon (97103) v1	cmowmB793
CmoCh06G009850	Cucurbita pepo (Zucchini)	cmocpeB796