Carg17678 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17678
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc ion binding protein
Location	Cucurbita_argyrosperma_scaffold_119 : 771852 .. 772258 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGAATCGCCCCCTCTGTTGCCTGTGTGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCGCCAATTGCTCCAACCGCTTCCAGCACTCGTAAGGACACTCACGCTCTTCTTTTCTTTCTCGCCCTTTTCGTATCAACTTCAATTTTGGTAGTTCAGTTATTGCAGTAACTTCTACTGCGGGGAATCGGCCGGCCCAATAACTCGACTCTGCGATTGGTGCCGAACCGCACACACAACGCGCCGCCCTAGCCCTGCAGCTGCGAACAATGGGGCCACATCCCAAAAGCCTCACAAAATCACTGATCAAATTACTGAAACAAAAAGCTCTGCCACTGAAGTGCCCTCGCCTCGCCCTGCTCCACGCCGCTACAAGCTTCTCAAGGATGTCATGTGTTGA

mRNA sequence

ATGGATTTGAATCGCCCCCTCTGTTGCCTGTGTGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCGCCAATTGCTCCAACCGCTTCCAGCACTCTAACTTCTACTGCGGGGAATCGGCCGGCCCAATAACTCGACTCTGCGATTGGTGCCGAACCGCACACACAACGCGCCGCCCTAGCCCTGCAGCTGCGAACAATGGGGCCACATCCCAAAAGCCTCACAAAATCACTGATCAAATTACTGAAACAAAAAGCTCTGCCACTGAAGTGCCCTCGCCTCGCCCTGCTCCACGCCGCTACAAGCTTCTCAAGGATGTCATGTGTTGA

Coding sequence (CDS)

ATGGATTTGAATCGCCCCCTCTGTTGCCTGTGTGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCGCCAATTGCTCCAACCGCTTCCAGCACTCTAACTTCTACTGCGGGGAATCGGCCGGCCCAATAACTCGACTCTGCGATTGGTGCCGAACCGCACACACAACGCGCCGCCCTAGCCCTGCAGCTGCGAACAATGGGGCCACATCCCAAAAGCCTCACAAAATCACTGATCAAATTACTGAAACAAAAAGCTCTGCCACTGAAGTGCCCTCGCCTCGCCCTGCTCCACGCCGCTACAAGCTTCTCAAGGATGTCATGTGTTGA

Protein sequence

MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSNFYCGESAGPITRLCDWCRTAHTTRRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRRYKLLKDVMC

Homology

[Close]

BLAST of Carg17678 vs. NCBI nr
Match: XP_022924678.1 (uncharacterized protein LOC111432109 [Cucurbita moschata])

HSP 1 Score: 222.6 bits (566), Expect = 6.4e-55
Identity = 105/112 (93.75%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTT 60
           MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH   SNFYCGESA PITRLCDWCRT HTT
Sbjct: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCGESADPITRLCDWCRTEHTT 60

Query: 61  RRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRRYKLLKDVMC 110
           RRPSPAAANNGATSQKPHK+TDQITETKSSAT VPSPRPAPRRYKLLKDVMC
Sbjct: 61  RRPSPAAANNGATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of Carg17678 vs. NCBI nr
Match: XP_023526855.1 (uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.2 bits (565), Expect = 8.3e-55
Identity = 105/112 (93.75%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTT 60
           MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH   SNFYCGESA PITRLCDWCRT HTT
Sbjct: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCGESADPITRLCDWCRTEHTT 60

Query: 61  RRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRRYKLLKDVMC 110
           RRP PAAANNGATSQKPHKITDQITETKSSAT VPSPRPAPRRYKLLKDVMC
Sbjct: 61  RRPGPAAANNGATSQKPHKITDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of Carg17678 vs. NCBI nr
Match: XP_004134287.1 (PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus] >KGN56359.1 hypothetical protein Csa_3G117940 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 3.1e-33
Identity = 76/112 (67.86%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTT 60
           MDLN PLCCLCGDVGFPAKLFRC NCSNRFQH   SN+YCGES     R+CDWCR+   T
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 61  RRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRRYKLLKDVMC 110
            RP+ A+     TSQK +K    ITE +SSA  +PSPRPAPRRYKLLKDVMC
Sbjct: 61  CRPAFAS----TTSQKSNK----ITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of Carg17678 vs. NCBI nr
Match: XP_008437789.1 (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 5.3e-33
Identity = 76/112 (67.86%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTT 60
           MDLN PLCCLCGDVGFPA LFRC NCSNRFQH   SN+Y GES   I R+CDWCR+   T
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 61  RRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRRYKLLKDVMC 110
           RRP+  A     TSQK  K    ITE +SSA  +PSPRPAPRRYKLLKDVMC
Sbjct: 101 RRPAAFAT---TTSQKDRK----ITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of Carg17678 vs. NCBI nr
Match: XP_023747813.1 (uncharacterized protein LOC111896014 isoform X2 [Lactuca sativa])

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20
Identity = 60/120 (50.00%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSNFYCGESAGPITRLCDWCR------TA 60
           +D+ R +CC+CGDVGFP K+FRC NC NRFQHSN+Y  ES+ P   LCDWC+      + 
Sbjct: 2   VDVER-VCCMCGDVGFPDKIFRCTNCHNRFQHSNYY-NESSDP-PELCDWCQIDEIRSSK 61

Query: 61  HTTRRPSPAAANNGATSQKPHKITDQITET-----KSSATEVPSPRPAPRRYKLLKDVMC 110
           H      PAA ++G +     KI  Q  E      KS  T  PSPR   RRYKLLKDVMC
Sbjct: 62  HGGSSKKPAAISSGRSEYSGDKIKQQDREEGSEKGKSPTTGAPSPRTGTRRYKLLKDVMC 118

[Close]

BLAST of Carg17678 vs. TAIR10
Match: AT3G60520.1 (unknown protein)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-22
Identity = 61/129 (47.29%), Postives = 76/129 (58.91%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESAGPITRLCDWCRTAHTTR 60
           +DL R +CC+CGDVGF  KLF C+ C NRFQHS  + Y  E A PI ++CDWC+    +R
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPI-KICDWCQCEAKSR 61

Query: 61  RPSPAAANNGAT--------SQKPHKITDQ-ITETKSSA---------TEVPSPRPAPRR 110
             +    N G++        S   H+I  Q I +T SS+         T VPSPRPA RR
Sbjct: 62  TGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRR 121

[Close]

BLAST of Carg17678 vs. TAIR10
Match: AT1G02070.1 (unknown protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-16
Identity = 54/131 (41.22%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 7   LCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESAGPITRLCDWCRTAHTTRRPSPAA 66
           +CC+CGDVGF  KLF C +C  RFQHS  + Y G+ A P T +CDWCR+    R+ S  A
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEP-TEICDWCRS--DDRKLSNVA 63

Query: 67  ANNGATSQKP-------------------HKIT------DQITE-TKSSATEVPSPRPAP 110
            + G++S+KP                   H+I       DQ+ +        V SP+ A 
Sbjct: 64  RHGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTAT 123

[Close]

BLAST of Carg17678 vs. TrEMBL
Match: tr|A0A0A0L5P1|A0A0A0L5P1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.0e-33
Identity = 76/112 (67.86%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTT 60
           MDLN PLCCLCGDVGFPAKLFRC NCSNRFQH   SN+YCGES     R+CDWCR+   T
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 61  RRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRRYKLLKDVMC 110
            RP+ A+     TSQK +K    ITE +SSA  +PSPRPAPRRYKLLKDVMC
Sbjct: 61  CRPAFAS----TTSQKSNK----ITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of Carg17678 vs. TrEMBL
Match: tr|A0A1S3AVF1|A0A1S3AVF1_CUCME (uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.5e-33
Identity = 76/112 (67.86%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQH---SNFYCGESAGPITRLCDWCRTAHTT 60
           MDLN PLCCLCGDVGFPA LFRC NCSNRFQH   SN+Y GES   I R+CDWCR+   T
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 61  RRPSPAAANNGATSQKPHKITDQITETKSSATEVPSPRPAPRRYKLLKDVMC 110
           RRP+  A     TSQK  K    ITE +SSA  +PSPRPAPRRYKLLKDVMC
Sbjct: 101 RRPAAFAT---TTSQKDRK----ITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of Carg17678 vs. TrEMBL
Match: tr|Q9M207|Q9M207_ARATH (At3g60520 OS=Arabidopsis thaliana OX=3702 GN=T8B10_180 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.7e-19
Identity = 61/129 (47.29%), Postives = 76/129 (58.91%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESAGPITRLCDWCRTAHTTR 60
           +DL R +CC+CGDVGF  KLF C+ C NRFQHS  + Y  E A PI ++CDWC+    +R
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPI-KICDWCQCEAKSR 61

Query: 61  RPSPAAANNGAT--------SQKPHKITDQ-ITETKSSA---------TEVPSPRPAPRR 110
             +    N G++        S   H+I  Q I +T SS+         T VPSPRPA RR
Sbjct: 62  TGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRR 121

[Close]

BLAST of Carg17678 vs. TrEMBL
Match: tr|A0A178V606|A0A178V606_ARATH (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At3g54910 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.7e-19
Identity = 61/129 (47.29%), Postives = 76/129 (58.91%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESAGPITRLCDWCRTAHTTR 60
           +DL R +CC+CGDVGF  KLF C+ C NRFQHS  + Y  E A PI ++CDWC+    +R
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPI-KICDWCQCEAKSR 61

Query: 61  RPSPAAANNGAT--------SQKPHKITDQ-ITETKSSA---------TEVPSPRPAPRR 110
             +    N G++        S   H+I  Q I +T SS+         T VPSPRPA RR
Sbjct: 62  TGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRR 121

[Close]

BLAST of Carg17678 vs. TrEMBL
Match: tr|A0A2J6JJZ9|A0A2J6JJZ9_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X44241 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.4e-19
Identity = 59/122 (48.36%), Postives = 71/122 (58.20%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHS--NFYCGESAGPITRLCDWCR------ 60
           +D+ R +CC+CGDVGFP K+FRC NC NRFQHS  + Y  ES+ P   LCDWC+      
Sbjct: 2   VDVER-VCCMCGDVGFPDKIFRCTNCHNRFQHSYCSNYYNESSDP-PELCDWCQIDEIRS 61

Query: 61  TAHTTRRPSPAAANNGATSQKPHKITDQITET-----KSSATEVPSPRPAPRRYKLLKDV 110
           + H      PAA ++G +     KI  Q  E      KS  T  PSPR   RRYKLLKDV
Sbjct: 62  SKHGGSSKKPAAISSGRSEYSGDKIKQQDREEGSEKGKSPTTGAPSPRTGTRRYKLLKDV 121

The following BLAST results are available for this feature:

BLAST of Carg17678 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924678.1	6.4e-55	93.75	uncharacterized protein LOC111432109 [Cucurbita moschata]	[more]
XP_023526855.1	8.3e-55	93.75	uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo]	[more]
XP_004134287.1	3.1e-33	67.86	PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus] >KGN56359.1 hy...	[more]
XP_008437789.1	5.3e-33	67.86	PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]	[more]
XP_023747813.1	1.8e-20	50.00	uncharacterized protein LOC111896014 isoform X2 [Lactuca sativa]	[more]

BLAST of Carg17678 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60520.1	1.0e-22	47.29	unknown protein	[more]
AT1G02070.1	1.1e-16	41.22	unknown protein	[more]

BLAST of Carg17678 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg17678 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5P1\|A0A0A0L5P1_CUCSA	2.0e-33	67.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1	[more]
tr\|A0A1S3AVF1\|A0A1S3AVF1_CUCME	3.5e-33	67.86	uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=...	[more]
tr\|Q9M207\|Q9M207_ARATH	3.7e-19	47.29	At3g60520 OS=Arabidopsis thaliana OX=3702 GN=T8B10_180 PE=2 SV=1	[more]
tr\|A0A178V606\|A0A178V606_ARATH	3.7e-19	47.29	Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At3g54910 PE=4 ...	[more]
tr\|A0A2J6JJZ9\|A0A2J6JJZ9_LACSA	6.4e-19	48.36	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X44241 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17678-RA	Carg17678-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..98
None	No IPR available	PANTHER	PTHR33779	FAMILY NOT NAMED	coord: 3..109
None	No IPR available	PANTHER	PTHR33779:SF2	SUBFAMILY NOT NAMED	coord: 3..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17678	Csa3G117940	Cucumber (Chinese Long) v2	carcuB0145
Carg17678	MELO3C005964	Melon (DHL92) v3.5.1	carmeB0138
Carg17678	ClCG05G000270	Watermelon (Charleston Gray)	carwcgB0128
Carg17678	CSPI03G07300	Wild cucumber (PI 183967)	carcpiB0149
Carg17678	Cucsa.259820	Cucumber (Gy14) v1	carcgyB0165
Carg17678	CmaCh06G009630	Cucurbita maxima (Rimu)	carcmaB0177
Carg17678	CmoCh06G009850	Cucurbita moschata (Rifu)	carcmoB0185
Carg17678	CmoCh14G022240	Cucurbita moschata (Rifu)	carcmoB0182
Carg17678	Lsi05G022010	Bottle gourd (USVL1VR-Ls)	carlsiB119
Carg17678	Cp4.1LG03g15810	Cucurbita pepo (Zucchini)	carcpeB0192
Carg17678	CsGy3G007440	Cucumber (Gy14) v2	carcgybB0143
Carg17678	MELO3C005964.2	Melon (DHL92) v3.6.1	carmedB0142
Carg17678	CsaV3_3G007420	Cucumber (Chinese Long) v3	carcucB0153

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17678	Carg24170	Silver-seed gourd	carcarB109

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17678	Wax gourd	carwgoB0166
Carg17678	Cucurbita maxima (Rimu)	carcmaB0173
Carg17678	Cucurbita pepo (Zucchini)	carcpeB0194
Carg17678	Watermelon (97103) v1	carwmB0130
Carg17678	Watermelon (97103) v2	carwmbB0138