Lsi05G022010.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCGTAAGACCGTCTTTTGTTTTAATTTATTAGGCTATGATACTATGTTAGATGTTGTATTATCTTAAACTTACATATTTTGGTAGTTCAGTTACTGCAGCAACTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTACTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAGGATGTCATGTGTTAGAAACTTTTCCATCAACCCCCAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATTTACATATATGCACCTATATCATCTTAATTAATATAATCCTGTATGTGTATGTCGCCTTTCAAAATTAAATTATCCACAACATAAGATGGTTCTCTGTATTTTATAATCAAGGCATTTTCAATTACTTCAACCTTTTTAATGCATTCGTTTGCTCTTGAAATAATCTGAATATATATTCAAC ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCTTACTGCAGCAACTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTACTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAGGATGTCATGTGTTAGAAACTTTTCCATCAACCCCCAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATTTACATATATGCACCTATATCATCTTAATTAATATAATCCTGTATGTGTATGTCGCCTTTCAAAATTAAATTATCCACAACATAAGATGGTTCTCTGTATTTTATAATCAAGGCATTTTCAATTACTTCAACCTTTTTAATGCATTCGTTTGCTCTTGAAATAATCTGAATATATATTCAAC ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCTTACTGCAGCAACTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTACTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAGGATGTCATGTGTTAG MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC
BLAST of Lsi05G022010.1 vs. TrEMBL
Match: A0A0A0L5P1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117940 PE=4 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 1.4e-42 Identity = 86/114 (75.44%), Postives = 93/114 (81.58%), Query Frame = 1
BLAST of Lsi05G022010.1 vs. TrEMBL
Match: A0A022RQV6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016574mg PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 2.6e-25 Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = 1
BLAST of Lsi05G022010.1 vs. TrEMBL
Match: A0A061DUE3_THECC (Late cornified envelope protein 1E OS=Theobroma cacao GN=TCM_005618 PE=4 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23 Identity = 59/119 (49.58%), Postives = 77/119 (64.71%), Query Frame = 1
BLAST of Lsi05G022010.1 vs. TrEMBL
Match: A9PG29_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05730g PE=2 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23 Identity = 65/127 (51.18%), Postives = 79/127 (62.20%), Query Frame = 1
BLAST of Lsi05G022010.1 vs. TrEMBL
Match: D7LRR6_ARALL (Zinc ion binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_907580 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 9.2e-23 Identity = 64/130 (49.23%), Postives = 78/130 (60.00%), Query Frame = 1
BLAST of Lsi05G022010.1 vs. TAIR10
Match: AT3G60520.1 (AT3G60520.1 unknown protein) HSP 1 Score: 113.2 bits (282), Expect = 1.0e-25 Identity = 63/130 (48.46%), Postives = 76/130 (58.46%), Query Frame = 1
BLAST of Lsi05G022010.1 vs. TAIR10
Match: AT1G02070.1 (AT1G02070.1 unknown protein) HSP 1 Score: 95.1 bits (235), Expect = 2.9e-20 Identity = 51/130 (39.23%), Postives = 70/130 (53.85%), Query Frame = 1
BLAST of Lsi05G022010.1 vs. NCBI nr
Match: gi|659074774|ref|XP_008437789.1| (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]) HSP 1 Score: 181.4 bits (459), Expect = 8.8e-43 Identity = 87/114 (76.32%), Postives = 92/114 (80.70%), Query Frame = 1
BLAST of Lsi05G022010.1 vs. NCBI nr
Match: gi|449433002|ref|XP_004134287.1| (PREDICTED: uncharacterized protein LOC101222685 [Cucumis sativus]) HSP 1 Score: 180.3 bits (456), Expect = 2.0e-42 Identity = 86/114 (75.44%), Postives = 93/114 (81.58%), Query Frame = 1
BLAST of Lsi05G022010.1 vs. NCBI nr
Match: gi|848861144|ref|XP_012831396.1| (PREDICTED: uncharacterized protein LOC105952400 [Erythranthe guttata]) HSP 1 Score: 122.9 bits (307), Expect = 3.7e-25 Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = 1
BLAST of Lsi05G022010.1 vs. NCBI nr
Match: gi|743788321|ref|XP_011033224.1| (PREDICTED: uncharacterized protein LOC105131778 [Populus euphratica]) HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23 Identity = 65/127 (51.18%), Postives = 79/127 (62.20%), Query Frame = 1
BLAST of Lsi05G022010.1 vs. NCBI nr
Match: gi|566202783|ref|XP_006375260.1| (hypothetical protein POPTR_0014s05730g [Populus trichocarpa]) HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23 Identity = 65/127 (51.18%), Postives = 79/127 (62.20%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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