Lsi02G010850 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G010850
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRPM1 interacting protein 4, putative
Locationchr02 : 12186825 .. 12188870 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACTAAAATCGACTGATCAAACAACTTTCAACCTCTTTACTCCTTACTCCTCCATGTTCCTCTCTTCTACAATACAAACTCTTCCAAATTCCGCCGTTGCCGTCGCCATTGCCGCCGCAGCAGCAACCACGGAGCTGCCACAGCTCATGGCAGTGAGTGTTTTTTCTTTTTTTTTTCATCAACACAAAACCAAAATAAAATTCATCAATTACCATCTCAAATTAAAATCATATCGTGGAATTAATTACTAATTAGAAGAATGAAATTTGTATTAATAATCTTCAATTAATTAATTAATCTAATGGGCAGGGGCCAAAATCGTCATCTCACGTTCCGAAATTCGGCAATTGGGATTCCGATGACGTACCGTACACCATCTGTTTCGAAAACGCCCGTGAACTCCGAGCCGCCGGCGTCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGCCACCGTCGTAAACCAAAAACCAATCCCAGCCGACAACCGCCGTCATCATGATGGCGGAGATTACCATCAGAGGCGAGCGATGGGAAACTCGGGATCGGAGAAATTGAGCAGTGAGAGAAGCGGTTCGGATTATGCGCTTCTGAAAGAGGCTAAGCAGAGTGGGAGGAAGAAGAAAAATAGTATTGGAGCGGAAGGAATGAGTAGATTTACTCCGACGACGACGGTGGGCGGAAAGGGTAATCGGAACCCTAGGGTTCGACGGAATAATGAAGGGGAAATGATAGCGTCGGTGCCGAAATTTGGGAGCTGGGATGTGAGGGATCCGAAATCGGGAGATGGATATACGGCGATTTTCAATAAAGTAAAGATTGAGAAGGAAATTGGAGGTTCTAATAATCCTCAAGCCGTTCCGCCATTGATGAATCAAACCAAGCAATTACCAATTGCTCAAACTACTACTGCTACTAATACTCATGGATCCACTTCATTTGCTTCCAAGGTACCTCTTATTCGTCTTTCTATACATTTAAATTTCTAATCATTTAGGTTAATGTTTTTATTTCATGTTTTTCTTCTTACAAATAAAAATAAGGAAACTTAACTAAAATTATGCAAACTTATGTAATGAAACCTATGCAGCCAGGTTTGAAATGAGATTGAGTTGTAATGTAATCCAAAGTCGGCTCGATTTTTAATATTAAATTTATTTCGTTCCCATAGTTTTCATTCCAACATTTTTTTCTATCGTTTTCACGCTTCATGATCTCATTTCTATGTTGCATTTGATTCCTCATGCATTTCAACACTCTTCTAATTTTCAGTAATTTTGATTACATTCTAACCCTCAAACTGCTTCTAATAGTTTGTAAACTTTGTTAAGTATTTTTAAAAATATAAAATGAGGTTTTTTTCCAGTGAAATTTAGAAGCAAAATAAACAATAAGCCTCCCTTTTTTTTATTAAGTACAATGGAGTGGAGAAATTTGAACCACAAACATCTTGGTTGTTATAGATATATTGTAGGCTAGTTGAACTATGTTGTTTTGACAACAAAGCTCTTAAGCCATTGATAATTATGTATATTAAGTTATGTTAAATTACAAATTTGGTCACTATATAGTTTAAAGTAAAGTTAGAATTTAGTTTCTATGGTTTATAATTTAAATTTAGTCATTGGTTTGATAAAACTCTTATTATGAGGATTGTATCAAACCATAAAGACTATTTATGAGGTTCAGTAAACTAAGAGAACAAAATTTTAACTTTTGAAAATTATAGGGATTAAATTCTAACTTTTATTAAATGAATTAAATTTCAAATTTAACCATTAAGTTATAAAGTATAAAATTGGTTTTTTATTATTTAAAAAATAATGAAATATTTATCCATTTATTTATGCAGATATGTTGCTGTTTATGTCCAAAGTGAAGCACATCATCATTGCTCCAAGAGAGTAGACTGAAAACAGTGGAAGTGTTTAATTTGCTGATTTTTCACTTTTAGAAATCTATATCCGTTCTTGTATTTTGATATAAATATCTCTCAGAATTTGAATAATTATATTTAAATAAATAGATAATGTTTTGTTTT

mRNA sequence

GAACTAAAATCGACTGATCAAACAACTTTCAACCTCTTTACTCCTTACTCCTCCATGTTCCTCTCTTCTACAATACAAACTCTTCCAAATTCCGCCGTTGCCGTCGCCATTGCCGCCGCAGCAGCAACCACGGAGCTGCCACAGCTCATGGCAGGGCCAAAATCGTCATCTCACGTTCCGAAATTCGGCAATTGGGATTCCGATGACGTACCGTACACCATCTGTTTCGAAAACGCCCGTGAACTCCGAGCCGCCGGCGTCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGCCACCGTCGTAAACCAAAAACCAATCCCAGCCGACAACCGCCGTCATCATGATGGCGGAGATTACCATCAGAGGCGAGCGATGGGAAACTCGGGATCGGAGAAATTGAGCAGTGAGAGAAGCGGTTCGGATTATGCGCTTCTGAAAGAGGCTAAGCAGAGTGGGAGGAAGAAGAAAAATAGTATTGGAGCGGAAGGAATGAGTAGATTTACTCCGACGACGACGGTGGGCGGAAAGGGTAATCGGAACCCTAGGGTTCGACGGAATAATGAAGGGGAAATGATAGCGTCGGTGCCGAAATTTGGGAGCTGGGATGTGAGGGATCCGAAATCGGGAGATGGATATACGGCGATTTTCAATAAAGTAAAGATTGAGAAGGAAATTGGAGGTTCTAATAATCCTCAAGCCGTTCCGCCATTGATGAATCAAACCAAGCAATTACCAATTGCTCAAACTACTACTGCTACTAATACTCATGGATCCACTTCATTTGCTTCCAAGATATGTTGCTGTTTATGTCCAAAGTGAAGCACATCATCATTGCTCCAAGAGAGTAGACTGAAAACAGTGGAAGTGTTTAATTTGCTGATTTTTCACTTTTAGAAATCTATATCCGTTCTTGTATTTTGATATAAATATCTCTCAGAATTTGAATAATTATATTTAAATAAATAGATAATGTTTTGTTTT

Coding sequence (CDS)

ATGTTCCTCTCTTCTACAATACAAACTCTTCCAAATTCCGCCGTTGCCGTCGCCATTGCCGCCGCAGCAGCAACCACGGAGCTGCCACAGCTCATGGCAGGGCCAAAATCGTCATCTCACGTTCCGAAATTCGGCAATTGGGATTCCGATGACGTACCGTACACCATCTGTTTCGAAAACGCCCGTGAACTCCGAGCCGCCGGCGTCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGCCACCGTCGTAAACCAAAAACCAATCCCAGCCGACAACCGCCGTCATCATGATGGCGGAGATTACCATCAGAGGCGAGCGATGGGAAACTCGGGATCGGAGAAATTGAGCAGTGAGAGAAGCGGTTCGGATTATGCGCTTCTGAAAGAGGCTAAGCAGAGTGGGAGGAAGAAGAAAAATAGTATTGGAGCGGAAGGAATGAGTAGATTTACTCCGACGACGACGGTGGGCGGAAAGGGTAATCGGAACCCTAGGGTTCGACGGAATAATGAAGGGGAAATGATAGCGTCGGTGCCGAAATTTGGGAGCTGGGATGTGAGGGATCCGAAATCGGGAGATGGATATACGGCGATTTTCAATAAAGTAAAGATTGAGAAGGAAATTGGAGGTTCTAATAATCCTCAAGCCGTTCCGCCATTGATGAATCAAACCAAGCAATTACCAATTGCTCAAACTACTACTGCTACTAATACTCATGGATCCACTTCATTTGCTTCCAAGATATGTTGCTGTTTATGTCCAAAGTGA

Protein sequence

MFLSSTIQTLPNSAVAVAIAAAAATTELPQLMAGPKSSSHVPKFGNWDSDDVPYTICFENARELRAAGVTFDPNDPDTYPPATVVNQKPIPADNRRHHDGGDYHQRRAMGNSGSEKLSSERSGSDYALLKEAKQSGRKKKNSIGAEGMSRFTPTTTVGGKGNRNPRVRRNNEGEMIASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKEIGGSNNPQAVPPLMNQTKQLPIAQTTTATNTHGSTSFASKICCCLCPK
Homology
[Close]
BLAST of Lsi02G010850 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.2e-16
Identity = 71/233 (30.47%), Postives = 105/233 (45.06%), Query Frame = 1 

Query: 39  SHVPKFGNWDSDD-VPYTICFENARELRAAGVTF-DPNDPD----------TYPPATVVN 98
           S+VPKFGNW++++ VPYT  F+ AR+ RA G    +PNDP+           +PP++   
Sbjct: 4   SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSS--R 63

Query: 99  QKPIPAD----NRRHHDGGDYHQRRAMGNSGSEKLSSERSGSDYALLKEAKQSGRKK--- 158
            KP   D    +R H    +  + +  G++G    S+E +        +      K    
Sbjct: 64  TKPEQVDTVRRSREHMRSREESELKQFGDAGGS--SNEAANKRQGRASQNNSYDNKSPLH 123

Query: 159 KNSIGAEGMSRFTPTTTVGGKGNRNPRVRRNNEGEMIASVPKFGSWDVRDPKSGDGYTAI 218
           KNS    G SR  PT            +R +   E +  VPKFG WD  +P S DGYT I
Sbjct: 124 KNSYDGTGKSRPKPTN-----------LRADESPEKVTVVPKFGDWDENNPSSADGYTHI 183

Query: 219 FNKVKIEKEIGGSNNPQAVPPLMNQTKQLPIAQTTTATNTHGSTSFASKICCC 253
           FNKV+ E+  G +         ++ + + P  Q++   N   S       CCC
Sbjct: 184 FNKVREERSSGAN---------VSGSSRTPTHQSSRNPNNTSS-------CCC 205

[Close]
BLAST of Lsi02G010850 vs. TrEMBL
Match: A0A0A0M0M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699040 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 4.8e-96
Identity = 184/226 (81.42%), Postives = 199/226 (88.05%), Query Frame = 1 

Query: 32  MAGPKSSSHVPKFGNWDSDDVPYTICFENARELRAAGVTFDPNDPDTYPPATVVNQKPIP 91
           MAGPKSSSHVPKFGNWDSDDVPYTI FENAREL+AAG+TFDPNDPDTYPP  V NQ   P
Sbjct: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60

Query: 92  ADNRRHHDGGDYHQRRAMGNSGSEKLSSERSGSDYALLKEAKQSGRKKKNSIGAEGMSRF 151
           A++ R+HDG D HQRR + NSGSEKLSSERS SDYALLK AKQSGRKKKNS GAEGMSRF
Sbjct: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLK-AKQSGRKKKNSNGAEGMSRF 120

Query: 152 TPTTTVGGKGNRNPRVRRNNEGEMIASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKEIGG 211
           +P  TV GKGNRNPRVRRNNEGEM+ASVPKFGSWDVRDPKSGDGYTAIFNKVKIEK++GG
Sbjct: 121 SP-ATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGG 180

Query: 212 SNNPQAVPPLMNQTKQLPIAQTTTA-TNTHGSTSFASKICCCLCPK 257
           SN+ Q+VP LMNQTKQ PI QTT   +++HGSTSF SKICCCL PK
Sbjct: 181 SNDTQSVPALMNQTKQ-PITQTTVGKSSSHGSTSFGSKICCCLYPK 223

[Close]
BLAST of Lsi02G010850 vs. TrEMBL
Match: A0A061GGZ7_THECC (RPM1 interacting protein 4, putative OS=Theobroma cacao GN=TCM_030331 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.4e-26
Identity = 95/253 (37.55%), Postives = 131/253 (51.78%), Query Frame = 1 

Query: 39  SHVPKFGNWDSDDVPYTICFENARELRAAGVTFDPNDPDTYP------------------ 98
           SHVPKFG+WD+D++PYT  FENAR+ RA G+  +PNDP+  P                  
Sbjct: 75  SHVPKFGDWDNDNLPYTAYFENARKERA-GIRMNPNDPEENPEAFMYTGGGLESNCDCQP 134

Query: 99  ---PATVVNQKPIPADNRRHHDGG------------DYHQRRAMGNSGSEKLSSERSGSD 158
              P    +QK IPAD + H+DG             DY +      S + +  SE+S SD
Sbjct: 135 VQVPPAAGSQKSIPAD-KNHNDGHSRQNAPNRNGSYDYQKSVRSHRSMASESGSEKSNSD 194

Query: 159 YALLKEAKQ---SGRKKKNSIGAEGMSRFTPTTTVGGKGNRNPRVRRNNEGE--MIASVP 218
           ++LL+ + +   SG+KK    G  G S F+ + + G   +RN   + +N  +    AS+P
Sbjct: 195 HSLLRFSHRRANSGQKK----GRVGGSSFSSSVS-GQFTHRNGSYQSDNNRQHRRTASIP 254

Query: 219 KFGSWDVRDPKSGDGYTAIFNKVKIEKEIGGSNNPQAVPPLMNQTKQLPIAQTTTATNTH 254
           KFG WD  DP SG+GYTAIFN+VK EK+   S  P  VPP  +       ++  T     
Sbjct: 255 KFGEWDETDPTSGEGYTAIFNQVKAEKQSPTSKFP-TVPPQQSNYSDCYHSKPRT----- 312

[Close]
BLAST of Lsi02G010850 vs. TrEMBL
Match: D7TYX9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0516g00010 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.6e-25
Identity = 88/252 (34.92%), Postives = 130/252 (51.59%), Query Frame = 1 

Query: 32  MAGPKSSSHVPKFGNWDSDDVPYTICFENARELRAA--GVTFDPNDPDTYPPATVVN--- 91
           M+  +  SHVPKFGNWD+D+VPYT  F+NAR+ +    G+  +PNDP+  P A +     
Sbjct: 1   MSWLQQRSHVPKFGNWDNDNVPYTAYFDNARKEKTGPTGLRINPNDPEENPEAFMFGRSE 60

Query: 92  ---------QKPIPADNRR--HHDGGDYHQR-------RAMGNSGS--EKLSSERSGSDY 151
                    QKP P +N +   H   D H+R       R+ G S S   +  SE+S  DY
Sbjct: 61  ATPPHHLNPQKPPPEENNQVEGHRRRDSHRRSPSDQQQRSGGTSRSINSESGSEKSNLDY 120

Query: 152 ALLKEAKQSGRKKKNSIGAEGMSRFTPTTTVGGKGNRNPRVRR------NNEGEMIASVP 211
           + L+        KK+ +   G S  +P+      G  + R++       ++    +ASVP
Sbjct: 121 SHLR--------KKSQLSDGGSSSLSPSVP----GPSHTRLKSIGTPPPDDHAHRVASVP 180

Query: 212 KFGSWDVRDPKSGDGYTAIFNKVKIEKEIGGSNNPQAVPPLMNQTKQLPIAQTTTATNTH 253
           KFG+WD  DP SG+G+T IFNKVK E+++  +  P+ VPP        P +  + +   H
Sbjct: 181 KFGAWDETDPTSGEGFTVIFNKVKQERQVAATMLPR-VPP--------PQSAYSNSQKKH 231

[Close]
BLAST of Lsi02G010850 vs. TrEMBL
Match: A0A059CFL7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01380 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 83/230 (36.09%), Postives = 117/230 (50.87%), Query Frame = 1 

Query: 32  MAGPKSSSHVPKFGNWDSDDVPYTICFENARELRAAGVTFDPNDPDTYPP--ATVVNQKP 91
           MA  +  SHVPKFGNWDSD++PYT CFENAR  +A GV  +PNDP+  P   A+V  +  
Sbjct: 1   MALSQQHSHVPKFGNWDSDNIPYTACFENARREKA-GVKMNPNDPEENPEIQASVAFEHN 60

Query: 92  IPADNRRHH----DGGDYHQRRAMGNSGSEKLSSERSGSDYALLKEAKQSGRKKKNSIGA 151
           I   +RR +       D H+R     S   +  SE+S S          +   +K  +  
Sbjct: 61  ISEGHRRFNVHRRTPSDQHKRSVSRGSVRSESGSEKSSSVSRWNSSQHHARPDRKKGLTE 120

Query: 152 EGMSRFTPTTTVGGKGNRNPRVRRNNEGEMIA-SVPKFGSWDVRDPKSGDGYTAIFNKVK 211
              S  +   +V     +    + +++    A S+PKFG+WD  DP+SG+G+T IF+KVK
Sbjct: 121 SSNSLSSSVASVPKHARQRSGSQPSDDSHRRAPSIPKFGAWDETDPRSGEGFTVIFSKVK 180

Query: 212 IEKEIGGSNNPQAVPPLMNQTKQLPIAQTTTATNTHGSTSFASKICCCLC 255
            E+    S  P  +PP         IA ++       S+S  SKICCCLC
Sbjct: 181 EERHNASSKIP-VLPPEQ-------IAHSSNHQKRESSSSSRSKICCCLC 221

[Close]
BLAST of Lsi02G010850 vs. TrEMBL
Match: A0A0B0Q117_GOSAR (RPM1-interacting 4-like protein OS=Gossypium arboreum GN=F383_15209 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.4e-23
Identity = 86/236 (36.44%), Postives = 121/236 (51.27%), Query Frame = 1 

Query: 39  SHVPKFGNWDSDDVPYTICFENARELRAAGVTFDPNDPDTYPPATVVNQ---------KP 98
           SHVPKFG+WD+ D+PYT  FENAR+ +A G+  +PNDP+  P A +  +         + 
Sbjct: 9   SHVPKFGDWDNGDLPYTTYFENARKEKA-GIRMNPNDPEENPEAFMYTRGGPESNYDGRS 68

Query: 99  IPADNRRHH------DGGDY-HQRRAMGNSGSEKLSSERSGSDYALLKEA-KQSGRKKKN 158
           +P    +HH      DG  Y HQ+ A     +   S   +GSD ++L  + ++    +KN
Sbjct: 69  VPVTADKHHRNAANKDGSSYDHQKSARRQRDTALESENNTGSDRSILHSSHRRRNSGQKN 128

Query: 159 SIGAEGMSRFTPTTTVGGKGNRNPRVRRN-NEGEMIASVPKFGSWDVRDPKSGDGYTAIF 218
           S    G S F+   +V G+  RN   + + N+    ASVPKFG WD  DP SG+G+T IF
Sbjct: 129 S--RPGGSAFS--ASVSGQSQRNGNHQLDGNKHHRTASVPKFGEWDETDPTSGEGFTVIF 188

Query: 219 NKVKIEKEIGGSNNPQAVPP---LMNQTKQLPIAQTTTATNTHGSTSFASKICCCL 254
           N++K EK+   S+N Q V P    MN +K                     KICCCL
Sbjct: 189 NQLKEEKQAPPSSNYQTVAPKVKTMNYSK--------------------LKICCCL 219

[Close]
BLAST of Lsi02G010850 vs. TAIR10
Match: AT3G25070.1 (AT3G25070.1 RPM1 interacting protein 4)

HSP 1 Score: 85.5 bits (210), Expect = 5.2e-17
Identity = 71/233 (30.47%), Postives = 105/233 (45.06%), Query Frame = 1 

Query: 39  SHVPKFGNWDSDD-VPYTICFENARELRAAGVTF-DPNDPD----------TYPPATVVN 98
           S+VPKFGNW++++ VPYT  F+ AR+ RA G    +PNDP+           +PP++   
Sbjct: 4   SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSS--R 63

Query: 99  QKPIPAD----NRRHHDGGDYHQRRAMGNSGSEKLSSERSGSDYALLKEAKQSGRKK--- 158
            KP   D    +R H    +  + +  G++G    S+E +        +      K    
Sbjct: 64  TKPEQVDTVRRSREHMRSREESELKQFGDAGGS--SNEAANKRQGRASQNNSYDNKSPLH 123

Query: 159 KNSIGAEGMSRFTPTTTVGGKGNRNPRVRRNNEGEMIASVPKFGSWDVRDPKSGDGYTAI 218
           KNS    G SR  PT            +R +   E +  VPKFG WD  +P S DGYT I
Sbjct: 124 KNSYDGTGKSRPKPTN-----------LRADESPEKVTVVPKFGDWDENNPSSADGYTHI 183

Query: 219 FNKVKIEKEIGGSNNPQAVPPLMNQTKQLPIAQTTTATNTHGSTSFASKICCC 253
           FNKV+ E+  G +         ++ + + P  Q++   N   S       CCC
Sbjct: 184 FNKVREERSSGAN---------VSGSSRTPTHQSSRNPNNTSS-------CCC 205

[Close]
BLAST of Lsi02G010850 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-07
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1 

Query: 179 VPKFGSWDVRDPKSGDGYTAIFNKVKIEKEIGG-SNNPQAVPPLMNQTKQL 229
           +PKFG WDV DP S +G+T IFNK + EK+ GG S++P    P  N+  ++
Sbjct: 8   LPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEV 58

[Close]
BLAST of Lsi02G010850 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-07
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1 

Query: 179 VPKFGSWDVRDPKSGDGYTAIFNKVKIEKEIGG 212
           +PKFG WDV DP S +G+T IFNK + EK+ GG
Sbjct: 24  LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 56

[Close]
BLAST of Lsi02G010850 vs. NCBI nr
Match: gi|659118177|ref|XP_008458983.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 3.0e-99
Identity = 192/225 (85.33%), Postives = 200/225 (88.89%), Query Frame = 1 

Query: 32  MAGPKSSSHVPKFGNWDSDDVPYTICFENARELRAAGVTFDPNDPDTYPPATVVNQKPIP 91
           MAG KSSSHVPKFGNWDSDDVPYTI FENAREL+AAGVTFDPNDPDTYPPA   NQ  IP
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 92  ADNRRHHDGGDYHQRRAMGNSGSEKLSSERSGSDYALLKEAKQSGRKKKNSIGAEGMSRF 151
           AD+ RHHDG D HQRR + NSGSEKLSSERS SDYALLK AKQSGRKKKNS GAEGMSRF
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLK-AKQSGRKKKNSNGAEGMSRF 120

Query: 152 TPTTTVGGKGNRNPRVRRNNEGEMIASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKEIGG 211
           +PTT V GKGNRNPRVRRNNEGEM+ASVPKFGSWDVRDPKSGDGYTAIFNKVKIEK+IGG
Sbjct: 121 SPTT-VDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGG 180

Query: 212 SNNPQAVPPLMNQTKQLPIAQTTTA-TNTHGSTSFASKICCCLCP 256
           SNNPQ VPPLMNQTKQ P+ QTT A T+T GSTSF SKICCCL P
Sbjct: 181 SNNPQTVPPLMNQTKQ-PMTQTTVAKTSTQGSTSFVSKICCCLGP 222

[Close]
BLAST of Lsi02G010850 vs. NCBI nr
Match: gi|778664446|ref|XP_011660296.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 6.9e-96
Identity = 184/226 (81.42%), Postives = 199/226 (88.05%), Query Frame = 1 

Query: 32  MAGPKSSSHVPKFGNWDSDDVPYTICFENARELRAAGVTFDPNDPDTYPPATVVNQKPIP 91
           MAGPKSSSHVPKFGNWDSDDVPYTI FENAREL+AAG+TFDPNDPDTYPP  V NQ   P
Sbjct: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60

Query: 92  ADNRRHHDGGDYHQRRAMGNSGSEKLSSERSGSDYALLKEAKQSGRKKKNSIGAEGMSRF 151
           A++ R+HDG D HQRR + NSGSEKLSSERS SDYALLK AKQSGRKKKNS GAEGMSRF
Sbjct: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLK-AKQSGRKKKNSNGAEGMSRF 120

Query: 152 TPTTTVGGKGNRNPRVRRNNEGEMIASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKEIGG 211
           +P  TV GKGNRNPRVRRNNEGEM+ASVPKFGSWDVRDPKSGDGYTAIFNKVKIEK++GG
Sbjct: 121 SP-ATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGG 180

Query: 212 SNNPQAVPPLMNQTKQLPIAQTTTA-TNTHGSTSFASKICCCLCPK 257
           SN+ Q+VP LMNQTKQ PI QTT   +++HGSTSF SKICCCL PK
Sbjct: 181 SNDTQSVPALMNQTKQ-PITQTTVGKSSSHGSTSFGSKICCCLYPK 223

[Close]
BLAST of Lsi02G010850 vs. NCBI nr
Match: gi|590626635|ref|XP_007026224.1| (RPM1 interacting protein 4, putative [Theobroma cacao])

HSP 1 Score: 127.5 bits (319), Expect = 3.4e-26
Identity = 95/253 (37.55%), Postives = 131/253 (51.78%), Query Frame = 1 

Query: 39  SHVPKFGNWDSDDVPYTICFENARELRAAGVTFDPNDPDTYP------------------ 98
           SHVPKFG+WD+D++PYT  FENAR+ RA G+  +PNDP+  P                  
Sbjct: 75  SHVPKFGDWDNDNLPYTAYFENARKERA-GIRMNPNDPEENPEAFMYTGGGLESNCDCQP 134

Query: 99  ---PATVVNQKPIPADNRRHHDGG------------DYHQRRAMGNSGSEKLSSERSGSD 158
              P    +QK IPAD + H+DG             DY +      S + +  SE+S SD
Sbjct: 135 VQVPPAAGSQKSIPAD-KNHNDGHSRQNAPNRNGSYDYQKSVRSHRSMASESGSEKSNSD 194

Query: 159 YALLKEAKQ---SGRKKKNSIGAEGMSRFTPTTTVGGKGNRNPRVRRNNEGE--MIASVP 218
           ++LL+ + +   SG+KK    G  G S F+ + + G   +RN   + +N  +    AS+P
Sbjct: 195 HSLLRFSHRRANSGQKK----GRVGGSSFSSSVS-GQFTHRNGSYQSDNNRQHRRTASIP 254

Query: 219 KFGSWDVRDPKSGDGYTAIFNKVKIEKEIGGSNNPQAVPPLMNQTKQLPIAQTTTATNTH 254
           KFG WD  DP SG+GYTAIFN+VK EK+   S  P  VPP  +       ++  T     
Sbjct: 255 KFGEWDETDPTSGEGYTAIFNQVKAEKQSPTSKFP-TVPPQQSNYSDCYHSKPRT----- 312

[Close]
BLAST of Lsi02G010850 vs. NCBI nr
Match: gi|359496977|ref|XP_002263923.2| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Vitis vinifera])

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 88/252 (34.92%), Postives = 130/252 (51.59%), Query Frame = 1 

Query: 32  MAGPKSSSHVPKFGNWDSDDVPYTICFENARELRAA--GVTFDPNDPDTYPPATVVN--- 91
           M+  +  SHVPKFGNWD+D+VPYT  F+NAR+ +    G+  +PNDP+  P A +     
Sbjct: 1   MSWLQQRSHVPKFGNWDNDNVPYTAYFDNARKEKTGPTGLRINPNDPEENPEAFMFGRSE 60

Query: 92  ---------QKPIPADNRR--HHDGGDYHQR-------RAMGNSGS--EKLSSERSGSDY 151
                    QKP P +N +   H   D H+R       R+ G S S   +  SE+S  DY
Sbjct: 61  ATPPHHLNPQKPPPEENNQVEGHRRRDSHRRSPSDQQQRSGGTSRSINSESGSEKSNLDY 120

Query: 152 ALLKEAKQSGRKKKNSIGAEGMSRFTPTTTVGGKGNRNPRVRR------NNEGEMIASVP 211
           + L+        KK+ +   G S  +P+      G  + R++       ++    +ASVP
Sbjct: 121 SHLR--------KKSQLSDGGSSSLSPSVP----GPSHTRLKSIGTPPPDDHAHRVASVP 180

Query: 212 KFGSWDVRDPKSGDGYTAIFNKVKIEKEIGGSNNPQAVPPLMNQTKQLPIAQTTTATNTH 253
           KFG+WD  DP SG+G+T IFNKVK E+++  +  P+ VPP        P +  + +   H
Sbjct: 181 KFGAWDETDPTSGEGFTVIFNKVKQERQVAATMLPR-VPP--------PQSAYSNSQKKH 231

[Close]
BLAST of Lsi02G010850 vs. NCBI nr
Match: gi|731439877|ref|XP_010647139.1| (PREDICTED: RPM1-interacting protein 4 isoform X2 [Vitis vinifera])

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 87/245 (35.51%), Postives = 127/245 (51.84%), Query Frame = 1 

Query: 39  SHVPKFGNWDSDDVPYTICFENARELRAA--GVTFDPNDPDTYPPATVVN---------- 98
           SHVPKFGNWD+D+VPYT  F+NAR+ +    G+  +PNDP+  P A +            
Sbjct: 5   SHVPKFGNWDNDNVPYTAYFDNARKEKTGPTGLRINPNDPEENPEAFMFGRSEATPPHHL 64

Query: 99  --QKPIPADNRR--HHDGGDYHQR-------RAMGNSGS--EKLSSERSGSDYALLKEAK 158
             QKP P +N +   H   D H+R       R+ G S S   +  SE+S  DY+ L+   
Sbjct: 65  NPQKPPPEENNQVEGHRRRDSHRRSPSDQQQRSGGTSRSINSESGSEKSNLDYSHLR--- 124

Query: 159 QSGRKKKNSIGAEGMSRFTPTTTVGGKGNRNPRVRR------NNEGEMIASVPKFGSWDV 218
                KK+ +   G S  +P+      G  + R++       ++    +ASVPKFG+WD 
Sbjct: 125 -----KKSQLSDGGSSSLSPSVP----GPSHTRLKSIGTPPPDDHAHRVASVPKFGAWDE 184

Query: 219 RDPKSGDGYTAIFNKVKIEKEIGGSNNPQAVPPLMNQTKQLPIAQTTTATNTHGSTSFAS 253
            DP SG+G+T IFNKVK E+++  +  P+ VPP        P +  + +   H ++S  S
Sbjct: 185 TDPTSGEGFTVIFNKVKQERQVAATMLPR-VPP--------PQSAYSNSQKKHQNSSSGS 228

The following BLAST results are available for this feature:
BLAST of Lsi02G010850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RIN4_ARATH9.2e-1630.47RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1[more]
BLAST of Lsi02G010850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0M0_CUCSA4.8e-9681.42Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699040 PE=4 SV=1[more]
A0A061GGZ7_THECC2.4e-2637.55RPM1 interacting protein 4, putative OS=Theobroma cacao GN=TCM_030331 PE=4 SV=1[more]
D7TYX9_VITVI7.6e-2534.92Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0516g00010 PE=4 SV=... [more]
A0A059CFL7_EUCGR1.7e-2436.09Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01380 PE=4 SV=1[more]
A0A0B0Q117_GOSAR2.4e-2336.44RPM1-interacting 4-like protein OS=Gossypium arboreum GN=F383_15209 PE=4 SV=1[more]
BLAST of Lsi02G010850 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G25070.15.2e-1730.47 RPM1 interacting protein 4[more]
AT2G04410.18.3e-0747.06 RPM1-interacting protein 4 (RIN4) family protein[more]
AT5G55850.28.3e-0760.61 RPM1-interacting protein 4 (RIN4) family protein[more]
BLAST of Lsi02G010850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659118177|ref|XP_008458983.1|3.0e-9985.33PREDICTED: RPM1-interacting protein 4-like [Cucumis melo][more]
gi|778664446|ref|XP_011660296.1|6.9e-9681.42PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus][more]
gi|590626635|ref|XP_007026224.1|3.4e-2637.55RPM1 interacting protein 4, putative [Theobroma cacao][more]
gi|359496977|ref|XP_002263923.2|1.1e-2434.92PREDICTED: RPM1-interacting protein 4 isoform X1 [Vitis vinifera][more]
gi|731439877|ref|XP_010647139.1|1.1e-2435.51PREDICTED: RPM1-interacting protein 4 isoform X2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008700TypeIII_avirulence_cleave
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G010850.1Lsi02G010850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 178..208
score: 6.7
NoneNo IPR availablePANTHERPTHR33159FAMILY NOT NAMEDcoord: 32..255
score: 3.3
NoneNo IPR availablePANTHERPTHR33159:SF8SUBFAMILY NOT NAMEDcoord: 32..255
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G010850Csa1G699040Cucumber (Chinese Long) v2culsiB033
Lsi02G010850CSPI01G33990Wild cucumber (PI 183967)cpilsiB034
Lsi02G010850Cucsa.332480Cucumber (Gy14) v1cgylsiB539
Lsi02G010850CmaCh18G005850Cucurbita maxima (Rimu)cmalsiB375
Lsi02G010850CmoCh18G005620Cucurbita moschata (Rifu)cmolsiB356
Lsi02G010850Cla004570Watermelon (97103) v1lsiwmB206
Lsi02G010850MELO3C021706Melon (DHL92) v3.5.1lsimeB180
Lsi02G010850ClCG01G009910Watermelon (Charleston Gray)lsiwcgB169
Lsi02G010850MELO3C021706.2Melon (DHL92) v3.6.1lsimedB190
Lsi02G010850Cla97C01G010030Watermelon (97103) v2lsiwmbB153
Lsi02G010850Bhi08G000661Wax gourdlsiwgoB245
Lsi02G010850Cp4.1LG02g09510Cucurbita pepo (Zucchini)cpelsiB449
Lsi02G010850CsGy1G032510Cucumber (Gy14) v2cgyblsiB030
Lsi02G010850CsaV3_1G045860Cucumber (Chinese Long) v3cuclsiB034
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G010850Silver-seed gourdcarlsiB201
Lsi02G010850Cucumber (Chinese Long) v3cuclsiB470
Lsi02G010850Watermelon (97103) v2lsiwmbB160
Lsi02G010850Wax gourdlsiwgoB233
Lsi02G010850Wax gourdlsiwgoB255
Lsi02G010850Bottle gourd (USVL1VR-Ls)lsilsiB064
Lsi02G010850Cucumber (Gy14) v1cgylsiB024
Lsi02G010850Cucurbita maxima (Rimu)cmalsiB207
Lsi02G010850Cucurbita maxima (Rimu)cmalsiB369
Lsi02G010850Cucurbita moschata (Rifu)cmolsiB197
Lsi02G010850Cucurbita pepo (Zucchini)cpelsiB417
Lsi02G010850Wild cucumber (PI 183967)cpilsiB447
Lsi02G010850Melon (DHL92) v3.5.1lsimeB227
Lsi02G010850Watermelon (Charleston Gray)lsiwcgB175
Lsi02G010850Cucumber (Gy14) v2cgyblsiB407
Lsi02G010850Melon (DHL92) v3.6.1lsimedB238