CmoCh18G005620 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G005620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RPM1-interacting protein 4
Location	Cmo_Chr18 : 4613008 .. 4613668 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTGAGTGTTTTTCTTTTTTTTTTTCATCTAAAATTAATTCATAGATTATTAGAAACTAATTTTTTTATTCATATGGTAGGGGGCAAAATCGTCATTTCACGTTCCCAAATTCGGTAATTGGGACACCGACGATGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCACCGGAGGTCTTCAAGCCAGTCGCACACGACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGATAATAAACTCCGGATCGGAGAAATTGAGTAGCGAGAGAAGCGGCTCCGATTACGCTCTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCGGTGGCCGGACATGGCGGAAACCCGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGTCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACTAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA

mRNA sequence

ATGGCAGGGGCAAAATCGTCATTTCACGTTCCCAAATTCGGTAATTGGGACACCGACGATGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCACCGGAGGTCTTCAAGCCAGTCGCACACGACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGATAATAAACTCCGGATCGGAGAAATTGAGTAGCGAGAGAAGCGGCTCCGATTACGCTCTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCGGTGGCCGGACATGGCGGAAACCCGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGTCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACTAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA

Coding sequence (CDS)

ATGGCAGGGGCAAAATCGTCATTTCACGTTCCCAAATTCGGTAATTGGGACACCGACGATGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCACCGGAGGTCTTCAAGCCAGTCGCACACGACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGATAATAAACTCCGGATCGGAGAAATTGAGTAGCGAGAGAAGCGGCTCCGATTACGCTCTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCGGTGGCCGGACATGGCGGAAACCCGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGTCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACTAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA

Homology

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BLAST of CmoCh18G005620 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-12
Identity = 67/202 (33.17%), Postives = 95/202 (47.03%), Query Frame = 1


Query: 9   HVPKFGNWDTDD-VPYTICFENARELRAAGITF-DPNDPD----------TYPPEV-FKP 68
           +VPKFGNW+ ++ VPYT  F+ AR+ RA G    +PNDP+           +PP    KP
Sbjct: 5   NVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTKP 64

Query: 69  VAHD----GGEHQRRPRQQPNRERGAIINSGSE-------KLSSERSGSDYALLKKSKEN 128
              D      EH R   +   ++ G    S +E       + S   S  + + L K+  +
Sbjct: 65  EQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYD 124

Query: 129 GVEGISRLAPAVAGHGGNPASV---PKFGSWDARDPKSGDGYTAIFNKMKIEKQIAAS-N 183
           G  G SR  P       +P  V   PKFG WD  +P S DGYT IFNK++ E+   A+ +
Sbjct: 125 GT-GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVS 184

[Close]

BLAST of CmoCh18G005620 vs. TrEMBL
Match: A0A0A0M0M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699040 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.7e-58
Identity = 130/216 (60.19%), Postives = 144/216 (66.67%), Query Frame = 1


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAG KSS HVPKFGNWD+DDVPYTI FENAREL+AAGITFDPNDPDTYPP          
Sbjct: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60

Query: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALL-------KKSKENGVEGISRLA 120
             H R      + +R  I+NSGSEKLSSERS SDYALL       KK   NG EG+SR +
Sbjct: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PAVAGHGGN-------------PASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASN 180
           PA     GN              ASVPKFGSWD RDPKSGDGYTAIFNK+KIEKQ+  SN
Sbjct: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180

Query: 181 -PQSVPPLMNKTKQPIAHT----NTTSGFTSFASKV 192
             QSVP LMN+TKQPI  T    +++ G TSF SK+
Sbjct: 181 DTQSVPALMNQTKQPITQTTVGKSSSHGSTSFGSKI 216

[Close]

BLAST of CmoCh18G005620 vs. TrEMBL
Match: D7TYX9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0516g00010 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-24
Identity = 82/227 (36.12%), Postives = 112/227 (49.34%), Query Frame = 1


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAA--GITFDPNDPDTYPPEVF----- 60
           M+  +   HVPKFGNWD D+VPYT  F+NAR+ +    G+  +PNDP+  P E F     
Sbjct: 1   MSWLQQRSHVPKFGNWDNDNVPYTAYFDNARKEKTGPTGLRINPNDPEENP-EAFMFGRS 60

Query: 61  -----------KPVAHDGGE---------HQRRPRQQPNRERGAIINSGSEKLSSERSGS 120
                      KP   +  +         H+R P  Q  R  G   +  SE   SE+S  
Sbjct: 61  EATPPHHLNPQKPPPEENNQVEGHRRRDSHRRSPSDQQQRSGGTSRSINSES-GSEKSNL 120

Query: 121 DYALLKKSKENGVEGISRLAPAVAG----------------HGGNPASVPKFGSWDARDP 180
           DY+ L+K  +    G S L+P+V G                H    ASVPKFG+WD  DP
Sbjct: 121 DYSHLRKKSQLSDGGSSSLSPSVPGPSHTRLKSIGTPPPDDHAHRVASVPKFGAWDETDP 180

Query: 181 KSGDGYTAIFNKMKIEKQIAASN-PQSVPPLMNKTKQPIAHTNTTSG 184
            SG+G+T IFNK+K E+Q+AA+  P+  PP    +     H N++SG
Sbjct: 181 TSGEGFTVIFNKVKQERQVAATMLPRVPPPQSAYSNSQKKHQNSSSG 225

[Close]

BLAST of CmoCh18G005620 vs. TrEMBL
Match: A0A059CFL7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01380 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 81/209 (38.76%), Postives = 115/209 (55.02%), Query Frame = 1


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVA--H 60
           MA ++   HVPKFGNWD+D++PYT CFENAR    AG+  +PNDP+   PE+   VA  H
Sbjct: 1   MALSQQHSHVPKFGNWDSDNIPYTACFENARR-EKAGVKMNPNDPEE-NPEIQASVAFEH 60

Query: 61  DGGE-------HQRRPRQQPNR--ERGAI-INSGSEKLSS-ERSGSDYALLKKSKENGV- 120
           +  E       H+R P  Q  R   RG++   SGSEK SS  R  S     +  ++ G+ 
Sbjct: 61  NISEGHRRFNVHRRTPSDQHKRSVSRGSVRSESGSEKSSSVSRWNSSQHHARPDRKKGLT 120

Query: 121 EGISRLAPAVAG--------HGGNPA--------SVPKFGSWDARDPKSGDGYTAIFNKM 180
           E  + L+ +VA          G  P+        S+PKFG+WD  DP+SG+G+T IF+K+
Sbjct: 121 ESSNSLSSSVASVPKHARQRSGSQPSDDSHRRAPSIPKFGAWDETDPRSGEGFTVIFSKV 180

[Close]

BLAST of CmoCh18G005620 vs. TrEMBL
Match: K7LB62_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.6e-19
Identity = 74/202 (36.63%), Postives = 104/202 (51.49%), Query Frame = 1


Query: 4   AKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAH----- 63
           A+ S HVPKFGNWDTD+VPYT  FENAR  ++ GI  +PNDP    PE F          
Sbjct: 2   AQHSHHVPKFGNWDTDNVPYTSYFENARREKS-GIMINPNDP-MENPEAFNTCIRVDADE 61

Query: 64  ---------------DGGEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKE 123
                          + G H RR  +  N E       G+    SE+S  D+++  K   
Sbjct: 62  VMMASHGYSHNVHSLENGSHVRRRSRGSNGELTVTAEFGA----SEQSHFDHSVNHKRNM 121

Query: 124 N----GVEGISRLA--------PAVAGHGGNPAS-VPKFGSWDARDPKSGDGYTAIFNKM 170
           +     ++G S  +         + + H  + A+ +PKFG+WD  +PKSG+GYTAIF+K+
Sbjct: 122 SKGGSSIKGFSSSSHNTQRTANSSFSDHSNHRATAIPKFGTWDVTNPKSGEGYTAIFSKI 181

[Close]

BLAST of CmoCh18G005620 vs. TrEMBL
Match: A0A0R0I967_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G008700 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.6e-19
Identity = 74/202 (36.63%), Postives = 104/202 (51.49%), Query Frame = 1


Query: 4   AKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAH----- 63
           A+ S HVPKFGNWDTD+VPYT  FENAR  ++ GI  +PNDP    PE F          
Sbjct: 2   AQHSHHVPKFGNWDTDNVPYTSYFENARREKS-GIMINPNDP-MENPEAFNTCIRVDADE 61

Query: 64  ---------------DGGEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKE 123
                          + G H RR  +  N E       G+    SE+S  D+++  K   
Sbjct: 62  VMMASHGYSHNVHSLENGSHVRRRSRGSNGELTVTAEFGA----SEQSHFDHSVNHKRNM 121

Query: 124 N----GVEGISRLA--------PAVAGHGGNPAS-VPKFGSWDARDPKSGDGYTAIFNKM 170
           +     ++G S  +         + + H  + A+ +PKFG+WD  +PKSG+GYTAIF+K+
Sbjct: 122 SKGGSSIKGFSSSSHNTQRTANSSFSDHSNHRATAIPKFGTWDVTNPKSGEGYTAIFSKI 181

[Close]

BLAST of CmoCh18G005620 vs. TAIR10
Match: AT3G25070.1 (AT3G25070.1 RPM1 interacting protein 4)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-13
Identity = 67/202 (33.17%), Postives = 95/202 (47.03%), Query Frame = 1


Query: 9   HVPKFGNWDTDD-VPYTICFENARELRAAGITF-DPNDPD----------TYPPEV-FKP 68
           +VPKFGNW+ ++ VPYT  F+ AR+ RA G    +PNDP+           +PP    KP
Sbjct: 5   NVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTKP 64

Query: 69  VAHD----GGEHQRRPRQQPNRERGAIINSGSE-------KLSSERSGSDYALLKKSKEN 128
              D      EH R   +   ++ G    S +E       + S   S  + + L K+  +
Sbjct: 65  EQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYD 124

Query: 129 GVEGISRLAPAVAGHGGNPASV---PKFGSWDARDPKSGDGYTAIFNKMKIEKQIAAS-N 183
           G  G SR  P       +P  V   PKFG WD  +P S DGYT IFNK++ E+   A+ +
Sbjct: 125 GT-GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVS 184

[Close]

BLAST of CmoCh18G005620 vs. NCBI nr
Match: gi|659118177|ref|XP_008458983.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 1.2e-60
Identity = 132/216 (61.11%), Postives = 148/216 (68.52%), Query Frame = 1


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAG KSS HVPKFGNWD+DDVPYTI FENAREL+AAG+TFDPNDPDTYPP VF       
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALL-------KKSKENGVEGISRLA 120
            +H R    + + +R  I+NSGSEKLSSERS SDYALL       KK   NG EG+SR +
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PAVAGHGGN-------------PASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAAS- 180
           P      GN              ASVPKFGSWD RDPKSGDGYTAIFNK+KIEKQI  S 
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 NPQSVPPLMNKTKQPIAHT----NTTSGFTSFASKV 192
           NPQ+VPPLMN+TKQP+  T     +T G TSF SK+
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKI 216

[Close]

BLAST of CmoCh18G005620 vs. NCBI nr
Match: gi|778664446|ref|XP_011660296.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 9.6e-58
Identity = 130/216 (60.19%), Postives = 144/216 (66.67%), Query Frame = 1


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAG KSS HVPKFGNWD+DDVPYTI FENAREL+AAGITFDPNDPDTYPP          
Sbjct: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60

Query: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALL-------KKSKENGVEGISRLA 120
             H R      + +R  I+NSGSEKLSSERS SDYALL       KK   NG EG+SR +
Sbjct: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PAVAGHGGN-------------PASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASN 180
           PA     GN              ASVPKFGSWD RDPKSGDGYTAIFNK+KIEKQ+  SN
Sbjct: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180

Query: 181 -PQSVPPLMNKTKQPIAHT----NTTSGFTSFASKV 192
             QSVP LMN+TKQPI  T    +++ G TSF SK+
Sbjct: 181 DTQSVPALMNQTKQPITQTTVGKSSSHGSTSFGSKI 216

[Close]

BLAST of CmoCh18G005620 vs. NCBI nr
Match: gi|359496977|ref|XP_002263923.2| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Vitis vinifera])

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-24
Identity = 82/227 (36.12%), Postives = 112/227 (49.34%), Query Frame = 1


Query: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAA--GITFDPNDPDTYPPEVF----- 60
           M+  +   HVPKFGNWD D+VPYT  F+NAR+ +    G+  +PNDP+  P E F     
Sbjct: 1   MSWLQQRSHVPKFGNWDNDNVPYTAYFDNARKEKTGPTGLRINPNDPEENP-EAFMFGRS 60

Query: 61  -----------KPVAHDGGE---------HQRRPRQQPNRERGAIINSGSEKLSSERSGS 120
                      KP   +  +         H+R P  Q  R  G   +  SE   SE+S  
Sbjct: 61  EATPPHHLNPQKPPPEENNQVEGHRRRDSHRRSPSDQQQRSGGTSRSINSES-GSEKSNL 120

Query: 121 DYALLKKSKENGVEGISRLAPAVAG----------------HGGNPASVPKFGSWDARDP 180
           DY+ L+K  +    G S L+P+V G                H    ASVPKFG+WD  DP
Sbjct: 121 DYSHLRKKSQLSDGGSSSLSPSVPGPSHTRLKSIGTPPPDDHAHRVASVPKFGAWDETDP 180

Query: 181 KSGDGYTAIFNKMKIEKQIAASN-PQSVPPLMNKTKQPIAHTNTTSG 184
            SG+G+T IFNK+K E+Q+AA+  P+  PP    +     H N++SG
Sbjct: 181 TSGEGFTVIFNKVKQERQVAATMLPRVPPPQSAYSNSQKKHQNSSSG 225

[Close]

BLAST of CmoCh18G005620 vs. NCBI nr
Match: gi|731439877|ref|XP_010647139.1| (PREDICTED: RPM1-interacting protein 4 isoform X2 [Vitis vinifera])

HSP 1 Score: 119.8 bits (299), Expect = 5.3e-24
Identity = 81/219 (36.99%), Postives = 109/219 (49.77%), Query Frame = 1


Query: 9   HVPKFGNWDTDDVPYTICFENARELRAA--GITFDPNDPDTYPPEVF------------- 68
           HVPKFGNWD D+VPYT  F+NAR+ +    G+  +PNDP+  P E F             
Sbjct: 6   HVPKFGNWDNDNVPYTAYFDNARKEKTGPTGLRINPNDPEENP-EAFMFGRSEATPPHHL 65

Query: 69  ---KPVAHDGGE---------HQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKS 128
              KP   +  +         H+R P  Q  R  G   +  SE   SE+S  DY+ L+K 
Sbjct: 66  NPQKPPPEENNQVEGHRRRDSHRRSPSDQQQRSGGTSRSINSES-GSEKSNLDYSHLRKK 125

Query: 129 KENGVEGISRLAPAVAG----------------HGGNPASVPKFGSWDARDPKSGDGYTA 184
            +    G S L+P+V G                H    ASVPKFG+WD  DP SG+G+T 
Sbjct: 126 SQLSDGGSSSLSPSVPGPSHTRLKSIGTPPPDDHAHRVASVPKFGAWDETDPTSGEGFTV 185

[Close]

BLAST of CmoCh18G005620 vs. NCBI nr
Match: gi|731441020|ref|XP_010646963.1| (PREDICTED: RPM1-interacting protein 4-like, partial [Vitis vinifera])

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-23
Identity = 80/219 (36.53%), Postives = 108/219 (49.32%), Query Frame = 1


Query: 9   HVPKFGNWDTDDVPYTICFENARELRAA--GITFDPNDPDTYPPEVF------------- 68
           HVPKFGNWD D+VPYT  F+NAR+ +    G+  +PNDP+  P E F             
Sbjct: 6   HVPKFGNWDNDNVPYTAYFDNARKEKTGPTGLRINPNDPEENP-EAFMFGRSEATPPHHL 65

Query: 69  ---KPVAHDGGE---------HQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKS 128
              KP   +  +         H+R P     R  G   +  SE   SE+S  DY+ L+K 
Sbjct: 66  NPQKPPPEENNQVEGHRRRDSHRRSPSDHQQRSGGTSRSINSES-GSEKSNLDYSHLRKK 125

Query: 129 KENGVEGISRLAPAVAG----------------HGGNPASVPKFGSWDARDPKSGDGYTA 184
            +    G S L+P+V G                H    ASVPKFG+WD  DP SG+G+T 
Sbjct: 126 SQLSDGGSSSLSPSVPGPSHTRLKSIGTPPPDDHAHRVASVPKFGAWDETDPTSGEGFTV 185

The following BLAST results are available for this feature:

BLAST of CmoCh18G005620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIN4_ARATH	2.1e-12	33.17	RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1	[more]

BLAST of CmoCh18G005620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0M0_CUCSA	6.7e-58	60.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699040 PE=4 SV=1	[more]
D7TYX9_VITVI	1.7e-24	36.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0516g00010 PE=4 SV=...	[more]
A0A059CFL7_EUCGR	1.3e-21	38.76	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01380 PE=4 SV=1	[more]
K7LB62_SOYBN	3.6e-19	36.63	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0I967_SOYBN	3.6e-19	36.63	Uncharacterized protein OS=Glycine max GN=GLYMA_09G008700 PE=4 SV=1	[more]

BLAST of CmoCh18G005620 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25070.1	1.2e-13	33.17	RPM1 interacting protein 4	[more]

BLAST of CmoCh18G005620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118177\|ref\|XP_008458983.1\|	1.2e-60	61.11	PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]	[more]
gi\|778664446\|ref\|XP_011660296.1\|	9.6e-58	60.19	PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus]	[more]
gi\|359496977\|ref\|XP_002263923.2\|	2.4e-24	36.12	PREDICTED: RPM1-interacting protein 4 isoform X1 [Vitis vinifera]	[more]
gi\|731439877\|ref\|XP_010647139.1\|	5.3e-24	36.99	PREDICTED: RPM1-interacting protein 4 isoform X2 [Vitis vinifera]	[more]
gi\|731441020\|ref\|XP_010646963.1\|	2.0e-23	36.53	PREDICTED: RPM1-interacting protein 4-like, partial [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G005620.1	CmoCh18G005620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 123..155 score: 2.6
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 1..166 score: 2.2
None	No IPR available	PANTHER	PTHR33159:SF8	SUBFAMILY NOT NAMED	coord: 1..166 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G005620	Cucsa.332480	Cucumber (Gy14) v1	cgycmoB0913
CmoCh18G005620	CmaCh18G005850	Cucurbita maxima (Rimu)	cmacmoB407
CmoCh18G005620	Cla004570	Watermelon (97103) v1	cmowmB377
CmoCh18G005620	Csa1G699040	Cucumber (Chinese Long) v2	cmocuB387
CmoCh18G005620	MELO3C021706	Melon (DHL92) v3.5.1	cmomeB357
CmoCh18G005620	ClCG01G009910	Watermelon (Charleston Gray)	cmowcgB340
CmoCh18G005620	CSPI01G33990	Wild cucumber (PI 183967)	cmocpiB390
CmoCh18G005620	Lsi02G010850	Bottle gourd (USVL1VR-Ls)	cmolsiB356
CmoCh18G005620	Cp4.1LG02g09510	Cucurbita pepo (Zucchini)	cmocpeB408
CmoCh18G005620	MELO3C021706.2	Melon (DHL92) v3.6.1	cmomedB409
CmoCh18G005620	CsaV3_1G045860	Cucumber (Chinese Long) v3	cmocucB0465
CmoCh18G005620	Cla97C01G010030	Watermelon (97103) v2	cmowmbB377
CmoCh18G005620	Bhi08G000661	Wax gourd	cmowgoB0523
CmoCh18G005620	CsGy1G032510	Cucumber (Gy14) v2	cgybcmoB090

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G005620	Cucurbita moschata (Rifu)	cmocmoB170
CmoCh18G005620	Cucurbita maxima (Rimu)	cmacmoB223
CmoCh18G005620	Cucurbita maxima (Rimu)	cmacmoB412
CmoCh18G005620	Cucurbita pepo (Zucchini)	cmocpeB403
CmoCh18G005620	Silver-seed gourd	carcmoB0316