CsGy1G032510 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G032510
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RPM1-interacting protein 4-like
Location	Chr1 : 32175661 .. 32177379 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGGTAGAAATCACTGGGTTTTTTGCATTTCAGAATGAGAGAAAAAAAGTTACAGGCATATTATAGTAACTTTTTGAACTATTTCTTTACATCTTGAAGGCTACGATTAGATGACTCAAATAATAATCTCTTCAAAAAAAAACTTGAAGCAAACAAACAGAAGATTACCCACAATAGAAACAAAGTAAAAGCCAAAACACACTAAACACATCGAAAACAAACTTAGAAACTATCGAACTATAATTGACTGATCAAGAACAAAACTTCCAACCTCATTACTCCTCCATCTTTTTTTCTTCTAACAATACGAACTCTTGCATACTCCGCCGTTCCCGTCATCGCGTTGCAGCAACCACGGAGCTGCCACAGCTCATGGCAGTGAGTGTTTTCTTCTTCTTCTTTGTTGCTTTTTTTTTCTTTTTATCCATCAACACAAAAGCACAAATAAAACCCAACTATTAAATGATATCGTGGTCGTGTGGAATTATTAGTTAGAAGTAAGTTTGTATTAGTCTTCAATTAATTTAATGTAATGGGCAGGGGCCAAAGTCGTCATCTCACGTTCCCAAATTCGGTAATTGGGATTCCGATGACGTACCGTACACCATCTATTTCGAAAACGCCCGTGAACTCCAAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGACCGCCGTCGCAAACCAAAATTCAAGCCCAGCCAACCACCACCGTTATCACGATGGCGACGACTCCCACCAGCGGCGAGAGATTGTGAACTCCGGGTCGGAGAAATTAAGCAGTGAGAGAAGCGATTCGGATTACGCGCTTCTGAAAGCGAAACAGAGTGGGAGGAAGAAGAAAAATAGCAATGGAGCGGAAGGAATGAGTAGATTTTCTCCGGCGACGGTGGACGGAAAGGGTAATCGGAACCCTAGGGTGCGGCGGAATAATGAGGGGGAAATGATGGCGTCGGTGCCGAAATTTGGAAGCTGGGATGTGAGGGATCCGAAATCGGGAGATGGATATACGGCGATATTCAATAAAGTGAAGATAGAGAAGCAAGTTGGAGGTTCTAATGATACTCAGAGTGTTCCGGCATTGATGAATCAAACGAAGCAGCCAATTACTCAAACAACTGTTGGTAAAAGTTCAAGTCATGGATCCACTTCATTTGGTTCCAAGGTACCCTCCTCTTTGTTCTTGTTTCTTTCTCAAGTTTCTATTAATTTAGGTCATGTTTGTTAATTATTTGGTCTCCATTCATAACTGTTTTTCTATATCAATCACATCTTTGTTGAAATCAATATTTGTTTATTTATGCAGATATGCTGTTGTTTATATCCAAAGTGAAGCACATCGCACATCATGACTGCTTCAAGAACAGACTCAAAACGGTGCAAATGTATTTGCTCATTTTCACACTTTTATAAAATCTATATCCCTTCTTGTGTTTTGATATAAATAATATCTTTCATAATTTCAATAATTATATTTATCTTCAATTATAAATACAAATTATTATAATGGAATAAACCCAATCTAGAATTTGCTTGCTTCATTTTCCTATACTTGAGACTCCCCTAATTTTAAATTTAGATTCTATAATTTAAACAAAGTTGAAATTTGTTATTTTTGTCTTAATTTTGATTTTAGGATATCAATGGTACATTAATTGTAATATGAAATGTAATGGTTGTTGATCAAAATAATTTGATTTTTT

mRNA sequence

TTGGGGTAGAAATCACTGGGTTTTTTGCATTTCAGAATGAGAGAAAAAAAGTTACAGGCATATTATAGTAACTTTTTGAACTATTTCTTTACATCTTGAAGGCTACGATTAGATGACTCAAATAATAATCTCTTCAAAAAAAAACTTGAAGCAAACAAACAGAAGATTACCCACAATAGAAACAAAGTAAAAGCCAAAACACACTAAACACATCGAAAACAAACTTAGAAACTATCGAACTATAATTGACTGATCAAGAACAAAACTTCCAACCTCATTACTCCTCCATCTTTTTTTCTTCTAACAATACGAACTCTTGCATACTCCGCCGTTCCCGTCATCGCGTTGCAGCAACCACGGAGCTGCCACAGCTCATGGCAGGGCCAAAGTCGTCATCTCACGTTCCCAAATTCGGTAATTGGGATTCCGATGACGTACCGTACACCATCTATTTCGAAAACGCCCGTGAACTCCAAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGACCGCCGTCGCAAACCAAAATTCAAGCCCAGCCAACCACCACCGTTATCACGATGGCGACGACTCCCACCAGCGGCGAGAGATTGTGAACTCCGGGTCGGAGAAATTAAGCAGTGAGAGAAGCGATTCGGATTACGCGCTTCTGAAAGCGAAACAGAGTGGGAGGAAGAAGAAAAATAGCAATGGAGCGGAAGGAATGAGTAGATTTTCTCCGGCGACGGTGGACGGAAAGGGTAATCGGAACCCTAGGGTGCGGCGGAATAATGAGGGGGAAATGATGGCGTCGGTGCCGAAATTTGGAAGCTGGGATGTGAGGGATCCGAAATCGGGAGATGGATATACGGCGATATTCAATAAAGTGAAGATAGAGAAGCAAGTTGGAGGTTCTAATGATACTCAGAGTGTTCCGGCATTGATGAATCAAACGAAGCAGCCAATTACTCAAACAACTGTTGATATGCTGTTGTTTATATCCAAAGTGAAGCACATCGCACATCATGACTGCTTCAAGAACAGACTCAAAACGGTGCAAATGTATTTGCTCATTTTCACACTTTTATAAAATCTATATCCCTTCTTGTGTTTTGATATAAATAATATCTTTCATAATTTCAATAATTATATTTATCTTCAATTATAAATACAAATTATTATAATGGAATAAACCCAATCTAGAATTTGCTTGCTTCATTTTCCTATACTTGAGACTCCCCTAATTTTAAATTTAGATTCTATAATTTAAACAAAGTTGAAATTTGTTATTTTTGTCTTAATTTTGATTTTAGGATATCAATGGTACATTAATTGTAATATGAAATGTAATGGTTGTTGATCAAAATAATTTGATTTTTT

Coding sequence (CDS)

ATGGCAGGGCCAAAGTCGTCATCTCACGTTCCCAAATTCGGTAATTGGGATTCCGATGACGTACCGTACACCATCTATTTCGAAAACGCCCGTGAACTCCAAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGACCGCCGTCGCAAACCAAAATTCAAGCCCAGCCAACCACCACCGTTATCACGATGGCGACGACTCCCACCAGCGGCGAGAGATTGTGAACTCCGGGTCGGAGAAATTAAGCAGTGAGAGAAGCGATTCGGATTACGCGCTTCTGAAAGCGAAACAGAGTGGGAGGAAGAAGAAAAATAGCAATGGAGCGGAAGGAATGAGTAGATTTTCTCCGGCGACGGTGGACGGAAAGGGTAATCGGAACCCTAGGGTGCGGCGGAATAATGAGGGGGAAATGATGGCGTCGGTGCCGAAATTTGGAAGCTGGGATGTGAGGGATCCGAAATCGGGAGATGGATATACGGCGATATTCAATAAAGTGAAGATAGAGAAGCAAGTTGGAGGTTCTAATGATACTCAGAGTGTTCCGGCATTGATGAATCAAACGAAGCAGCCAATTACTCAAACAACTGTTGATATGCTGTTGTTTATATCCAAAGTGAAGCACATCGCACATCATGACTGCTTCAAGAACAGACTCAAAACGGTGCAAATGTATTTGCTCATTTTCACACTTTTATAA

Protein sequence

MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSPANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFSPATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSNDTQSVPALMNQTKQPITQTTVDMLLFISKVKHIAHHDCFKNRLKTVQMYLLIFTLL

Homology

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BLAST of CsGy1G032510 vs. NCBI nr
Match: XP_011660296.1 (PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus] >KGN66824.1 hypothetical protein Csa_1G699040 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 2.6e-109
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP
Sbjct: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
           ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS
Sbjct: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN
Sbjct: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180

Query: 181 DTQSVPALMNQTKQPITQTTV 202
           DTQSVPALMNQTKQPITQTTV
Sbjct: 181 DTQSVPALMNQTKQPITQTTV 201

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BLAST of CsGy1G032510 vs. NCBI nr
Match: XP_008458983.1 (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 375.9 bits (964), Expect = 9.8e-101
Identity = 184/201 (91.54%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAG KSSSHVPKFGNWDSDDVPYTI+FENARELQAAG+TFDPNDPDTYPP   ANQNS P
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
           A+HHR+HDG+DSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           P TVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQ+GGSN
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 DTQSVPALMNQTKQPITQTTV 202
           + Q+VP LMNQTKQP+TQTTV
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTV 201

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BLAST of CsGy1G032510 vs. NCBI nr
Match: XP_022955116.1 (RPM1-interacting protein 4-like [Cucurbita moschata])

HSP 1 Score: 225.3 bits (573), Expect = 2.1e-55
Identity = 129/212 (60.85%), Postives = 140/212 (66.04%), Query Frame = 0


Query: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAG KSS HVPKFGNWD+DDVPYTI FENAREL+AAGITFDPNDPDTYPP          
Sbjct: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
             H R      + +R  I+NSGSEKLSSERS SDYALL       KK   NG EG+SR +
Sbjct: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALL-------KKSKENGVEGISRLA 120

Query: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           PA     GN              ASVPKFGSWD RDPKSGDGYTAIFNK+KIEKQ+  SN
Sbjct: 121 PAVAGHGGN-------------PASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASN 180

Query: 181 DTQSVPALMNQTKQPI--TQTTVDMLLFISKV 211
             QSVP LMN+TKQPI  T TT     F SK+
Sbjct: 181 -PQSVPPLMNKTKQPIAHTNTTSGFTSFASKI 191

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BLAST of CsGy1G032510 vs. NCBI nr
Match: XP_022994302.1 (RPM1-interacting protein 4-like [Cucurbita maxima])

HSP 1 Score: 219.5 bits (558), Expect = 1.2e-53
Identity = 125/212 (58.96%), Postives = 141/212 (66.51%), Query Frame = 0


Query: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAG  SS HVPKFGNWD+DDVPYTI FENAREL+AAGITFDPNDPDTYPP        + 
Sbjct: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
             H R      + +R  I+NSGSEKLSSERS S+YALL       KK   NG EG+SR +
Sbjct: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALL-------KKSKENGVEGISRLA 120

Query: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           PA      N  P         + ASVPKFGSWD +DPKSGDGYTAIFNK+KIEKQ+  SN
Sbjct: 121 PAVAGHGVNPKP---------VTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASN 180

Query: 181 DTQSVPALMNQTKQPI--TQTTVDMLLFISKV 211
             Q+VP LMN+TKQPI  T TT     F SK+
Sbjct: 181 -PQAVPPLMNKTKQPIAHTNTTSGFTSFASKI 195

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BLAST of CsGy1G032510 vs. NCBI nr
Match: XP_023525812.1 (RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.2 bits (557), Expect = 1.5e-53
Identity = 125/212 (58.96%), Postives = 138/212 (65.09%), Query Frame = 0


Query: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAG  SS HVPKFGNWD+DDVPYTI FENAREL+AAGI FDPNDPDTYPP          
Sbjct: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGINFDPNDPDTYPPEVFKPAAHDG 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
             H R      + +R  I+NSGSEKLSSERS SDYALL       KK   NG EG+SR +
Sbjct: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALL-------KKSKENGVEGISRLA 120

Query: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           PA     GN              ASVPKFGSWD RDPKSGDGYTAIFNK+KIEKQ+  SN
Sbjct: 121 PAVAGHGGN-------------PASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASN 180

Query: 181 DTQSVPALMNQTKQPI--TQTTVDMLLFISKV 211
             Q+VP LMN++KQPI  T TT     F SK+
Sbjct: 181 -PQAVPPLMNKSKQPIAHTNTTSGFTSFASKI 191

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BLAST of CsGy1G032510 vs. TAIR10
Match: AT3G25070.1 (RPM1 interacting protein 4)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-18
Identity = 64/195 (32.82%), Postives = 98/195 (50.26%), Query Frame = 0


Query: 8   SHVPKFGNWDSDD-VPYTIYFENARELQAAGI-TFDPNDPDTYPPTAVANQNSSPANHHR 67
           S+VPKFGNW++++ VPYT YF+ AR+ +A G    +PNDP+    +        P++  +
Sbjct: 4   SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTK 63

Query: 68  YHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKA--KQSGRKKKNSNGAEGMSRFSPAT 127
               D   + RE + S  E    +  D+  +  +A  K+ GR  +N N  +  S     +
Sbjct: 64  PEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQN-NSYDNKSPLHKNS 123

Query: 128 VDGKGNRNPR---VRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 187
            DG G   P+   +R +   E +  VPKFG WD  +P S DGYT IFNKV+ E+  G + 
Sbjct: 124 YDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANV 183

Query: 188 DTQSVPALMNQTKQP 196
              S       ++ P
Sbjct: 184 SGSSRTPTHQSSRNP 197

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BLAST of CsGy1G032510 vs. TAIR10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-07
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 146 VPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSNDT 183
           +PKFG WDV DP S +G+T IFNK + EK+ GG +D+
Sbjct: 8   LPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDS 44

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BLAST of CsGy1G032510 vs. TAIR10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 51.6 bits (122), Expect = 7.7e-07
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 146 VPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGG 179
           +PKFG WDV DP S +G+T IFNK + EK+ GG
Sbjct: 24  LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 56

[Close]

BLAST of CsGy1G032510 vs. TAIR10
Match: AT2G17660.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 46.2 bits (108), Expect = 3.2e-05
Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 145 SVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 181
           ++PKFG WDV DP + DG+T IF+K   +K+ G S+
Sbjct: 9   ALPKFGEWDVNDPATADGFTVIFSKAGEDKKTGRSS 44

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BLAST of CsGy1G032510 vs. TAIR10
Match: AT5G40645.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04
Identity = 18/39 (46.15%), Postives = 24/39 (61.54%), Query Frame = 0


Query: 146 VPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSNDTQS 185
           +PKFG WDV DP S +G+T IF K + +K+   S    S
Sbjct: 15  LPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAAS 53

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BLAST of CsGy1G032510 vs. Swiss-Prot
Match: sp|Q8GYN5|RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-17
Identity = 64/195 (32.82%), Postives = 98/195 (50.26%), Query Frame = 0


Query: 8   SHVPKFGNWDSDD-VPYTIYFENARELQAAGI-TFDPNDPDTYPPTAVANQNSSPANHHR 67
           S+VPKFGNW++++ VPYT YF+ AR+ +A G    +PNDP+    +        P++  +
Sbjct: 4   SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTK 63

Query: 68  YHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKA--KQSGRKKKNSNGAEGMSRFSPAT 127
               D   + RE + S  E    +  D+  +  +A  K+ GR  +N N  +  S     +
Sbjct: 64  PEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQN-NSYDNKSPLHKNS 123

Query: 128 VDGKGNRNPR---VRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 187
            DG G   P+   +R +   E +  VPKFG WD  +P S DGYT IFNKV+ E+  G + 
Sbjct: 124 YDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANV 183

Query: 188 DTQSVPALMNQTKQP 196
              S       ++ P
Sbjct: 184 SGSSRTPTHQSSRNP 197

[Close]

BLAST of CsGy1G032510 vs. Swiss-Prot
Match: sp|Q8S3M3|NOIL_ELAOL (NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 26/62 (41.94%), Postives = 34/62 (54.84%), Query Frame = 0


Query: 8  SHVPKFGNWDSDDVPYTIYFENARELQAAGI-TFDPNDPDTYP----PTAVANQNSSPAN 65
          +HVPKFGNWD +++ YT YFE     +  G   F+PNDP+  P    P  VA  +     
Sbjct: 5  AHVPKFGNWDGENISYTTYFETVHRDKGDGSKIFNPNDPEENPQAFYPRTVAQDHQHSEK 64

[Close]

BLAST of CsGy1G032510 vs. Swiss-Prot
Match: sp|O22633|NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.4e-05
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 146 VPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGG 179
           +PKFG WDV DP S +G+T IFNK + EK+ GG
Sbjct: 8   LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 40

[Close]

BLAST of CsGy1G032510 vs. TrEMBL
Match: tr|A0A0A0M0M0|A0A0A0M0M0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699040 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 1.7e-109
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP
Sbjct: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
           ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS
Sbjct: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN
Sbjct: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180

Query: 181 DTQSVPALMNQTKQPITQTTV 202
           DTQSVPALMNQTKQPITQTTV
Sbjct: 181 DTQSVPALMNQTKQPITQTTV 201

[Close]

BLAST of CsGy1G032510 vs. TrEMBL
Match: tr|A0A1S3C9P5|A0A1S3C9P5_CUCME (RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 6.5e-101
Identity = 184/201 (91.54%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAG KSSSHVPKFGNWDSDDVPYTI+FENARELQAAG+TFDPNDPDTYPP   ANQNS P
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
           A+HHR+HDG+DSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           P TVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQ+GGSN
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 DTQSVPALMNQTKQPITQTTV 202
           + Q+VP LMNQTKQP+TQTTV
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTV 201

[Close]

BLAST of CsGy1G032510 vs. TrEMBL
Match: tr|A0A2R6RB61|A0A2R6RB61_ACTCH (RPM1-interacting protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09713 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 69/176 (39.20%), Postives = 99/176 (56.25%), Query Frame = 0


Query: 8   SHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSPANHHRYH 67
           SHVPKFG+WDSD++PYT YFENAR+ + +G+  +PNDP+  P   +  +  + +  HR +
Sbjct: 8   SHVPKFGSWDSDNIPYTAYFENARKEKGSGVMMNPNDPEENPEAFMFGRVGTGSECHRRN 67

Query: 68  DGDDSHQRREIVNSGSEKLSSERSDSDYALL----KAKQSGRKKKNSNGAEGMSRFSPAT 127
             D  HQ+     S +        +S YAL     +  +S  +K ++  A    R SPA 
Sbjct: 68  TSD--HQKSGSHKSTNSXXXXXXXNSGYALQQQNHRRTRSTTRKNSTTEANNFVRPSPAH 127

Query: 128 VDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGS 180
              +   NP     ++     SVPKFG WD +DPKSG+G+T IFNKVK EKQ+  +
Sbjct: 128 DRLRSANNP---SEDKSYRSVSVPKFGVWDEKDPKSGEGFTVIFNKVKEEKQIAAT 178

[Close]

BLAST of CsGy1G032510 vs. TrEMBL
Match: tr|A0A061GGZ7|A0A061GGZ7_THECC (RPM1 interacting protein 4, putative OS=Theobroma cacao OX=3641 GN=TCM_030331 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.5e-22
Identity = 77/202 (38.12%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 8   SHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYP------------------ 67
           SHVPKFG+WD+D++PYT YFENAR+ + AGI  +PNDP+  P                  
Sbjct: 75  SHVPKFGDWDNDNLPYTAYFENARK-ERAGIRMNPNDPEENPEAFMYTGGGLESNCDCQP 134

Query: 68  ---PTAVANQNSSPA--NHHRYHDGDDSHQRREIVN---------SGSEKLSSERSDSDY 127
              P A  +Q S PA  NH+  H   ++  R    +         S + +  SE+S+SD+
Sbjct: 135 VQVPPAAGSQKSIPADKNHNDGHSRQNAPNRNGSYDYQKSVRSHRSMASESGSEKSNSDH 194

Query: 128 ALLKAKQSGRKKKNSNGAEGMSRFSPATVDGKGNRNPRVR--RNNEGEMMASVPKFGSWD 176
           +LL+            G  G S FS +      +RN   +   N +    AS+PKFG WD
Sbjct: 195 SLLRFSHRRANSGQKKGRVGGSSFSSSVSGQFTHRNGSYQSDNNRQHRRTASIPKFGEWD 254

[Close]

BLAST of CsGy1G032510 vs. TrEMBL
Match: tr|A0A2P5SIR8|A0A2P5SIR8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD04036 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.0e-22
Identity = 79/202 (39.11%), Postives = 110/202 (54.46%), Query Frame = 0


Query: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYP---------PT 60
           M+  K  SHVPKFG+WD+ D+PYT YFENAR+ + AGI  +PNDP+  P         P 
Sbjct: 1   MSEAKLRSHVPKFGDWDNGDLPYTTYFENARK-EKAGIRMNPNDPEENPEALMYTRGGPE 60

Query: 61  AVANQNSSPANHHRYH------DGDDSHQRREIVNSGSEKLSSE-RSDSDYALLKAKQSG 120
           +  +  S PA   ++H      DG     ++      +  L SE  + SD ++L +    
Sbjct: 61  SNYDGRSVPATADKHHQNAANKDGSSYDHQKSARRQRNTALESENNTGSDSSILHSNHRR 120

Query: 121 RKKKNSNGAEGMSRFSPATVDGKGNRNPRVRRN-NEGEMMASVPKFGSWDVRDPKSGDGY 180
           R     NG  G S FS A+V G+  R    + + N+    ASVPKFG WD  DP SG+G+
Sbjct: 121 RNPGQKNGRPGGSAFS-ASVSGQSQRTGNHQLDGNKHHRTASVPKFGEWDETDPTSGEGF 180

Query: 181 TAIFNKVKIEKQVGGSNDTQSV 186
           T IFN++K EKQ   S++ Q+V
Sbjct: 181 TVIFNRLK-EKQAAPSSNYQTV 199

The following BLAST results are available for this feature:

BLAST of CsGy1G032510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660296.1	2.6e-109	100.00	PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus] >KGN66824.1 hypothe...	[more]
XP_008458983.1	9.8e-101	91.54	PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]	[more]
XP_022955116.1	2.1e-55	60.85	RPM1-interacting protein 4-like [Cucurbita moschata]	[more]
XP_022994302.1	1.2e-53	58.96	RPM1-interacting protein 4-like [Cucurbita maxima]	[more]
XP_023525812.1	1.5e-53	58.96	RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G032510 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25070.1	1.5e-18	32.82	RPM1 interacting protein 4	[more]
AT2G04410.1	2.0e-07	56.76	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	7.7e-07	60.61	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G17660.1	3.2e-05	50.00	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	1.2e-04	46.15	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of CsGy1G032510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GYN5\|RIN4_ARATH	2.7e-17	32.82	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]
sp\|Q8S3M3\|NOIL_ELAOL	1.6e-06	41.94	NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1	[more]
sp\|O22633\|NOI4_ARATH	1.4e-05	60.61	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]

BLAST of CsGy1G032510 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0M0\|A0A0A0M0M0_CUCSA	1.7e-109	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699040 PE=4 SV=1	[more]
tr\|A0A1S3C9P5\|A0A1S3C9P5_CUCME	6.5e-101	91.54	RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=...	[more]
tr\|A0A2R6RB61\|A0A2R6RB61_ACTCH	1.6e-22	39.20	RPM1-interacting protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY...	[more]
tr\|A0A061GGZ7\|A0A061GGZ7_THECC	3.5e-22	38.12	RPM1 interacting protein 4, putative OS=Theobroma cacao OX=3641 GN=TCM_030331 PE...	[more]
tr\|A0A2P5SIR8\|A0A2P5SIR8_GOSBA	6.0e-22	39.11	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD04036 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G032510.1	CsGy1G032510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 144..175 e-value: 3.7E-15 score: 54.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..112
None	No IPR available	PANTHER	PTHR33159:SF8	SUBFAMILY NOT NAMED	coord: 7..197
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 7..197

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G032510	Cla004570	Watermelon (97103) v1	cgybwmB045
CsGy1G032510	Csa1G699040	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G032510	MELO3C021706	Melon (DHL92) v3.5.1	cgybmeB012
CsGy1G032510	ClCG01G009910	Watermelon (Charleston Gray)	cgybwcgB022
CsGy1G032510	CSPI01G33990	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G032510	CmaCh18G005850	Cucurbita maxima (Rimu)	cgybcmaB091
CsGy1G032510	CmoCh18G005620	Cucurbita moschata (Rifu)	cgybcmoB090
CsGy1G032510	Lsi02G010850	Bottle gourd (USVL1VR-Ls)	cgyblsiB030
CsGy1G032510	Cp4.1LG02g09510	Cucurbita pepo (Zucchini)	cgybcpeB092
CsGy1G032510	MELO3C021706.2	Melon (DHL92) v3.6.1	cgybmedB011
CsGy1G032510	CsaV3_1G045860	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G032510	Cla97C01G010030	Watermelon (97103) v2	cgybwmbB011
CsGy1G032510	Bhi08G000661	Wax gourd	cgybwgoB063

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G032510	Silver-seed gourd	carcgybB0240
CsGy1G032510	Cucurbita maxima (Rimu)	cgybcmaB065
CsGy1G032510	Cucurbita moschata (Rifu)	cgybcmoB061
CsGy1G032510	Cucurbita pepo (Zucchini)	cgybcpeB083