Cla004570 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004570
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0X9_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4
Location	Chr1 : 24372440 .. 24373243 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTGAGTGTTTTTTTTTTTTTTTTTTTCCTTGTCTTTTTTTCATCAGCACAATTACCATCTCAAATTAAATCATATTAATTACTAATAGAAGAATGAAATTTGTATTAATAATCTTCAATTAATCAATCTAATGGGCAGGGGGTAAAATCGTCATCTCACGTTCCGAAATTCGGCAATTGGGACTCCGATGACGTACCGTACACCATCTGTTTCGAAAACGCCCGTGAACTCCGAGCCACCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGCCGCCGTCGTAAACCAGAAATCAATCCCAGCCGACAACCGCCGTCATCACGACGGCAGGGACTACCACCAGCGGCGAGCGATCGGAAACTCCGGATCGGAGAAATTGAGCAGTGAGAGAAGCGGTTCGGATTACGCGCTTCTGAAAGAGGCGAAGCAGAGTGGAAGGAAGAAGAAAAATAGTAATGGAGCGGAAGGAATGAGTAGATTTACTCCGACGACGACGGTGGGCGGAAAGGGTAATCGGAACCCTAGGGTTCGGCGGAATAATGAAGGGGAAATGATGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGTGAGGGATCCGAAATCGGGAGATGGTTATACGGCGATTTTCAATAAAGTGAAGACTGAGAAGCAAATTGGAGGTTCTAAGAGTCCTCAGGCCGTTCCGCCATTGATGAATCAAACCAAGCAACCAATTGCTAAAACTACTACTGCTACTAATACTCGTGGACCCACTTCATTTGCTTTCAAGGTAATTTTACATTTCTAA

mRNA sequence

ATGGCAGGGGTAAAATCGTCATCTCACGTTCCGAAATTCGGCAATTGGGACTCCGATGACGTACCGTACACCATCTGTTTCGAAAACGCCCGTGAACTCCGAGCCACCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGCCGCCGTCGTAAACCAGAAATCAATCCCAGCCGACAACCGCCGTCATCACGACGGCAGGGACTACCACCAGCGGCGAGCGATCGGAAACTCCGGATCGGAGAAATTGAGCAGTGAGAGAAGCGGTTCGGATTACGCGCTTCTGAAAGAGGCGAAGCAGAGTGGAAGGAAGAAGAAAAATAGTAATGGAGCGGAAGGAATGAGTAGATTTACTCCGACGACGACGGTGGGCGGAAAGGGTAATCGGAACCCTAGGGTTCGGCGGAATAATGAAGGGGAAATGATGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGTGAGGGATCCGAAATCGGGAGATGGTTATACGGCGATTTTCAATAAAGTGAAGACTGAGAAGCAAATTGGAGGTTCTAAGAGTCCTCAGGCCGTTCCGCCATTGATGAATCAAACCAAGCAACCAATTGCTAAAACTACTACTGCTACTAATACTCGTGGACCCACTTCATTTGCTTTCAAGGTAATTTTACATTTCTAA

Coding sequence (CDS)

ATGGCAGGGGTAAAATCGTCATCTCACGTTCCGAAATTCGGCAATTGGGACTCCGATGACGTACCGTACACCATCTGTTTCGAAAACGCCCGTGAACTCCGAGCCACCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGCCGCCGTCGTAAACCAGAAATCAATCCCAGCCGACAACCGCCGTCATCACGACGGCAGGGACTACCACCAGCGGCGAGCGATCGGAAACTCCGGATCGGAGAAATTGAGCAGTGAGAGAAGCGGTTCGGATTACGCGCTTCTGAAAGAGGCGAAGCAGAGTGGAAGGAAGAAGAAAAATAGTAATGGAGCGGAAGGAATGAGTAGATTTACTCCGACGACGACGGTGGGCGGAAAGGGTAATCGGAACCCTAGGGTTCGGCGGAATAATGAAGGGGAAATGATGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGTGAGGGATCCGAAATCGGGAGATGGTTATACGGCGATTTTCAATAAAGTGAAGACTGAGAAGCAAATTGGAGGTTCTAAGAGTCCTCAGGCCGTTCCGCCATTGATGAATCAAACCAAGCAACCAATTGCTAAAACTACTACTGCTACTAATACTCGTGGACCCACTTCATTTGCTTTCAAGGTAATTTTACATTTCTAA

Protein sequence

MAGVKSSSHVPKFGNWDSDDVPYTICFENARELRATGITFDPNDPDTYPPAAVVNQKSIPADNRRHHDGRDYHQRRAIGNSGSEKLSSERSGSDYALLKEAKQSGRKKKNSNGAEGMSRFTPTTTVGGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKTEKQIGGSKSPQAVPPLMNQTKQPIAKTTTATNTRGPTSFAFKVILHF

Homology

[Close]

BLAST of Cla004570 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.0e-19
Identity = 65/207 (31.40%), Postives = 96/207 (46.38%), Query Frame = 1


Query: 8   SHVPKFGNWDSDD-VPYTICFENARELRATGITF-DPNDPD----------TYPPAAVVN 67
           S+VPKFGNW++++ VPYT  F+ AR+ RA G    +PNDP+           +PP++   
Sbjct: 4   SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTK 63

Query: 68  QKSIPA--DNRRHHDGRDYHQRRAIGNSGSEKLSSERSGSDYALLKEAKQSGRKK---KN 127
            + +     +R H   R+  + +  G++G    S+E +        +      K    KN
Sbjct: 64  PEQVDTVRRSREHMRSREESELKQFGDAGGS--SNEAANKRQGRASQNNSYDNKSPLHKN 123

Query: 128 SNGAEGMSRFTPTTTVGGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFN 187
           S    G SR  PT            +R +   E +  VPKFG WD  +P S DGYT IFN
Sbjct: 124 SYDGTGKSRPKPTN-----------LRADESPEKVTVVPKFGDWDENNPSSADGYTHIFN 183

Query: 188 KVKTEKQIGGSKSPQAVPPLMNQTKQP 198
           KV+ E+  G + S  +  P    ++ P
Sbjct: 184 KVREERSSGANVSGSSRTPTHQSSRNP 197

[Close]

BLAST of Cla004570 vs. TrEMBL
Match: A0A0A0M0M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699040 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 3.3e-93
Identity = 176/218 (80.73%), Postives = 188/218 (86.24%), Query Frame = 1


Query: 1   MAGVKSSSHVPKFGNWDSDDVPYTICFENARELRATGITFDPNDPDTYPPAAVVNQKSIP 60
           MAG KSSSHVPKFGNWDSDDVPYTI FENAREL+A GITFDPNDPDTYPP AV NQ S P
Sbjct: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60

Query: 61  ADNRRHHDGRDYHQRRAIGNSGSEKLSSERSGSDYALLKEAKQSGRKKKNSNGAEGMSRF 120
           A++ R+HDG D HQRR I NSGSEKLSSERS SDYALLK AKQSGRKKKNSNGAEGMSRF
Sbjct: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLK-AKQSGRKKKNSNGAEGMSRF 120

Query: 121 TPTTTVGGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKTEKQIGG 180
           +P  TV GKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVK EKQ+GG
Sbjct: 121 SP-ATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGG 180

Query: 181 SKSPQAVPPLMNQTKQPIAKTTTA-TNTRGPTSFAFKV 218
           S   Q+VP LMNQTKQPI +TT   +++ G TSF  K+
Sbjct: 181 SNDTQSVPALMNQTKQPITQTTVGKSSSHGSTSFGSKI 216

[Close]

BLAST of Cla004570 vs. TrEMBL
Match: A0A061GGZ7_THECC (RPM1 interacting protein 4, putative OS=Theobroma cacao GN=TCM_030331 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.8e-29
Identity = 93/227 (40.97%), Postives = 125/227 (55.07%), Query Frame = 1


Query: 1   MAGVKSSSHVPKFGNWDSDDVPYTICFENARELRATGITFDPNDPDTYP----------- 60
           M+ V+  SHVPKFG+WD+D++PYT  FENAR+ RA GI  +PNDP+  P           
Sbjct: 68  MSHVQLRSHVPKFGDWDNDNLPYTAYFENARKERA-GIRMNPNDPEENPEAFMYTGGGLE 127

Query: 61  ----------PAAVVNQKSIPADNRRHHDGR------------DYHQRRAIGNSGSEKLS 120
                     P A  +QKSIPAD + H+DG             DY +      S + +  
Sbjct: 128 SNCDCQPVQVPPAAGSQKSIPAD-KNHNDGHSRQNAPNRNGSYDYQKSVRSHRSMASESG 187

Query: 121 SERSGSDYALLKEAKQ---SGRKKKNSNGAEGMSRFTPTTTVGGKGNRNPRVRRNNEGE- 180
           SE+S SD++LL+ + +   SG+KK    G  G S F+ + + G   +RN   + +N  + 
Sbjct: 188 SEKSNSDHSLLRFSHRRANSGQKK----GRVGGSSFSSSVS-GQFTHRNGSYQSDNNRQH 247

Query: 181 -MMASVPKFGSWDVRDPKSGDGYTAIFNKVKTEKQIGGSKSPQAVPP 190
              AS+PKFG WD  DP SG+GYTAIFN+VK EKQ   SK P  VPP
Sbjct: 248 RRTASIPKFGEWDETDPTSGEGYTAIFNQVKAEKQSPTSKFP-TVPP 286

[Close]

BLAST of Cla004570 vs. TrEMBL
Match: A0A0B0Q117_GOSAR (RPM1-interacting 4-like protein OS=Gossypium arboreum GN=F383_15209 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.5e-26
Identity = 84/214 (39.25%), Postives = 116/214 (54.21%), Query Frame = 1


Query: 8   SHVPKFGNWDSDDVPYTICFENARELRATGITFDPNDPDTYPPAAVVNQ---------KS 67
           SHVPKFG+WD+ D+PYT  FENAR+ +A GI  +PNDP+  P A +  +         +S
Sbjct: 9   SHVPKFGDWDNGDLPYTTYFENARKEKA-GIRMNPNDPEENPEAFMYTRGGPESNYDGRS 68

Query: 68  IPADNRRHH------DGRDY-HQRRAIGNSGSEKLSSERSGSDYALLKEAKQSGRKKKNS 127
           +P    +HH      DG  Y HQ+ A     +   S   +GSD ++L     S  +++NS
Sbjct: 69  VPVTADKHHRNAANKDGSSYDHQKSARRQRDTALESENNTGSDRSIL----HSSHRRRNS 128

Query: 128 ---NGAEGMSRFTPTTTVGGKGNRNPRVRRN-NEGEMMASVPKFGSWDVRDPKSGDGYTA 187
              N   G S F+   +V G+  RN   + + N+    ASVPKFG WD  DP SG+G+T 
Sbjct: 129 GQKNSRPGGSAFS--ASVSGQSQRNGNHQLDGNKHHRTASVPKFGEWDETDPTSGEGFTV 188

Query: 188 IFNKVKTEKQIGGSKSPQAVPP---LMNQTKQPI 199
           IFN++K EKQ   S + Q V P    MN +K  I
Sbjct: 189 IFNQLKEEKQAPPSSNYQTVAPKVKTMNYSKLKI 215

[Close]

BLAST of Cla004570 vs. TrEMBL
Match: B9RXE0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0902970 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 80/217 (36.87%), Postives = 114/217 (52.53%), Query Frame = 1


Query: 8   SHVPKFGNWDSDDVPYTICFENARELRATGITFDPNDPDTYPPA---------------- 67
           SHVPKFGNW++D+VPYT  F+NAR+ +  G+  +PNDP   P A                
Sbjct: 16  SHVPKFGNWENDNVPYTAFFDNARKEKG-GVMINPNDPQENPEAFMHESEVELSFGRVRL 75

Query: 68  -AVVNQKSIPADNRRHHDGRDYHQRRAIGNSGSEKLSSERSGSDYALLKEAKQSGRKKKN 127
            +V  +K+     +R     D  +  +   S + +  S+RS SDY+LL+ A +  RKK  
Sbjct: 76  NSVCEEKNQMGGIKREPSESDQQKSSSHNKSMTSECGSDRSSSDYSLLQAAYRRDRKKGV 135

Query: 128 SNGAEGMSRFTPTTTVGGKGNRNPRVRR-NNEGEM---MASVPKFGSWDVRDPKSGDGYT 187
           + G E     T +T+   + +R  R    +NEG+     ASVPKFG+WD  DP SG+G+T
Sbjct: 136 AGGEEINYNNTLSTSAVSQNSRQRRGSHPSNEGQQHQRTASVPKFGAWDEADPTSGEGFT 195

Query: 188 AIFNKVKTEKQIGGSKSP-QAVP--PLMNQTKQPIAK 201
            IFN+VK EKQ   +  P   +P  P    T  P +K
Sbjct: 196 VIFNRVKEEKQAASAAFPFPTIPQQPSPTSTSPPPSK 231

[Close]

BLAST of Cla004570 vs. TrEMBL
Match: A0A0D2SV69_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G185300 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.2e-25
Identity = 85/221 (38.46%), Postives = 118/221 (53.39%), Query Frame = 1


Query: 1   MAGVKSSSHVPKFGNWDSDDVPYTICFENARELRATGITFDPNDPDTYPPAAVVNQ---- 60
           M+  K  SHVPKFG+WD+ D+PYT  FENAR+ +A GI  +PNDP+  P A +  +    
Sbjct: 1   MSEAKLRSHVPKFGDWDNGDLPYTTYFENARKEKA-GIRMNPNDPEENPEALMYTRGGPE 60

Query: 61  -----KSIPADNRRHH------DGRDY-HQRRAIGNSGSEKLSSERSGSDYALLKEAKQS 120
                +S+P    +HH      DG  Y HQ+ A     +   S   +GSD ++L     S
Sbjct: 61  SNYDGRSVPVTADKHHQNAANKDGSSYDHQKSARRQRNTALESENNTGSDRSIL----PS 120

Query: 121 GRKKKNS---NGAEGMSRFTPTTTVGGKGNRNPRVRRN-NEGEMMASVPKFGSWDVRDPK 180
             +++NS   NG  G S F  + +V G+  R    + + N+     SVPKFG WD  DP 
Sbjct: 121 NHRRRNSGQKNGRPGGSAF--SASVSGQSQRTGNHQLDGNKHHRTPSVPKFGEWDETDPT 180

Query: 181 SGDGYTAIFNKVKTEKQIGGSKSPQAVPP---LMNQTKQPI 199
           SG+G+T IFN++K EKQ   S + Q V P    MN +K  I
Sbjct: 181 SGEGFTVIFNRLK-EKQAAPSSNYQTVAPEVKTMNYSKLKI 213

[Close]

BLAST of Cla004570 vs. NCBI nr
Match: gi|659118177|ref|XP_008458983.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 367.5 bits (942), Expect = 1.7e-98
Identity = 183/218 (83.94%), Postives = 193/218 (88.53%), Query Frame = 1


Query: 1   MAGVKSSSHVPKFGNWDSDDVPYTICFENARELRATGITFDPNDPDTYPPAAVVNQKSIP 60
           MAG KSSSHVPKFGNWDSDDVPYTI FENAREL+A G+TFDPNDPDTYPPA   NQ SIP
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  ADNRRHHDGRDYHQRRAIGNSGSEKLSSERSGSDYALLKEAKQSGRKKKNSNGAEGMSRF 120
           AD+ RHHDG D HQRR I NSGSEKLSSERS SDYALLK AKQSGRKKKNSNGAEGMSRF
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLK-AKQSGRKKKNSNGAEGMSRF 120

Query: 121 TPTTTVGGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKTEKQIGG 180
           +P TTV GKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVK EKQIGG
Sbjct: 121 SP-TTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGG 180

Query: 181 SKSPQAVPPLMNQTKQPIAKTTTA-TNTRGPTSFAFKV 218
           S +PQ VPPLMNQTKQP+ +TT A T+T+G TSF  K+
Sbjct: 181 SNNPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKI 216

[Close]

BLAST of Cla004570 vs. NCBI nr
Match: gi|778664446|ref|XP_011660296.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 4.7e-93
Identity = 176/218 (80.73%), Postives = 188/218 (86.24%), Query Frame = 1


Query: 1   MAGVKSSSHVPKFGNWDSDDVPYTICFENARELRATGITFDPNDPDTYPPAAVVNQKSIP 60
           MAG KSSSHVPKFGNWDSDDVPYTI FENAREL+A GITFDPNDPDTYPP AV NQ S P
Sbjct: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60

Query: 61  ADNRRHHDGRDYHQRRAIGNSGSEKLSSERSGSDYALLKEAKQSGRKKKNSNGAEGMSRF 120
           A++ R+HDG D HQRR I NSGSEKLSSERS SDYALLK AKQSGRKKKNSNGAEGMSRF
Sbjct: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLK-AKQSGRKKKNSNGAEGMSRF 120

Query: 121 TPTTTVGGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKTEKQIGG 180
           +P  TV GKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVK EKQ+GG
Sbjct: 121 SP-ATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGG 180

Query: 181 SKSPQAVPPLMNQTKQPIAKTTTA-TNTRGPTSFAFKV 218
           S   Q+VP LMNQTKQPI +TT   +++ G TSF  K+
Sbjct: 181 SNDTQSVPALMNQTKQPITQTTVGKSSSHGSTSFGSKI 216

[Close]

BLAST of Cla004570 vs. NCBI nr
Match: gi|590626635|ref|XP_007026224.1| (RPM1 interacting protein 4, putative [Theobroma cacao])

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 93/227 (40.97%), Postives = 125/227 (55.07%), Query Frame = 1


Query: 1   MAGVKSSSHVPKFGNWDSDDVPYTICFENARELRATGITFDPNDPDTYP----------- 60
           M+ V+  SHVPKFG+WD+D++PYT  FENAR+ RA GI  +PNDP+  P           
Sbjct: 68  MSHVQLRSHVPKFGDWDNDNLPYTAYFENARKERA-GIRMNPNDPEENPEAFMYTGGGLE 127

Query: 61  ----------PAAVVNQKSIPADNRRHHDGR------------DYHQRRAIGNSGSEKLS 120
                     P A  +QKSIPAD + H+DG             DY +      S + +  
Sbjct: 128 SNCDCQPVQVPPAAGSQKSIPAD-KNHNDGHSRQNAPNRNGSYDYQKSVRSHRSMASESG 187

Query: 121 SERSGSDYALLKEAKQ---SGRKKKNSNGAEGMSRFTPTTTVGGKGNRNPRVRRNNEGE- 180
           SE+S SD++LL+ + +   SG+KK    G  G S F+ + + G   +RN   + +N  + 
Sbjct: 188 SEKSNSDHSLLRFSHRRANSGQKK----GRVGGSSFSSSVS-GQFTHRNGSYQSDNNRQH 247

Query: 181 -MMASVPKFGSWDVRDPKSGDGYTAIFNKVKTEKQIGGSKSPQAVPP 190
              AS+PKFG WD  DP SG+GYTAIFN+VK EKQ   SK P  VPP
Sbjct: 248 RRTASIPKFGEWDETDPTSGEGYTAIFNQVKAEKQSPTSKFP-TVPP 286

[Close]

BLAST of Cla004570 vs. NCBI nr
Match: gi|728851071|gb|KHG30514.1| (RPM1-interacting 4 -like protein [Gossypium arboreum])

HSP 1 Score: 126.3 bits (316), Expect = 6.5e-26
Identity = 84/214 (39.25%), Postives = 116/214 (54.21%), Query Frame = 1


Query: 8   SHVPKFGNWDSDDVPYTICFENARELRATGITFDPNDPDTYPPAAVVNQ---------KS 67
           SHVPKFG+WD+ D+PYT  FENAR+ +A GI  +PNDP+  P A +  +         +S
Sbjct: 9   SHVPKFGDWDNGDLPYTTYFENARKEKA-GIRMNPNDPEENPEAFMYTRGGPESNYDGRS 68

Query: 68  IPADNRRHH------DGRDY-HQRRAIGNSGSEKLSSERSGSDYALLKEAKQSGRKKKNS 127
           +P    +HH      DG  Y HQ+ A     +   S   +GSD ++L     S  +++NS
Sbjct: 69  VPVTADKHHRNAANKDGSSYDHQKSARRQRDTALESENNTGSDRSIL----HSSHRRRNS 128

Query: 128 ---NGAEGMSRFTPTTTVGGKGNRNPRVRRN-NEGEMMASVPKFGSWDVRDPKSGDGYTA 187
              N   G S F+   +V G+  RN   + + N+    ASVPKFG WD  DP SG+G+T 
Sbjct: 129 GQKNSRPGGSAFS--ASVSGQSQRNGNHQLDGNKHHRTASVPKFGEWDETDPTSGEGFTV 188

Query: 188 IFNKVKTEKQIGGSKSPQAVPP---LMNQTKQPI 199
           IFN++K EKQ   S + Q V P    MN +K  I
Sbjct: 189 IFNQLKEEKQAPPSSNYQTVAPKVKTMNYSKLKI 215

[Close]

BLAST of Cla004570 vs. NCBI nr
Match: gi|1000967515|ref|XP_015574210.1| (PREDICTED: RPM1-interacting protein 4 [Ricinus communis])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 80/215 (37.21%), Postives = 114/215 (53.02%), Query Frame = 1


Query: 8   SHVPKFGNWDSDDVPYTICFENARELRATGITFDPNDPDTYPPA---------------- 67
           SHVPKFGNW++D+VPYT  F+NAR+ +  G+  +PNDP   P A                
Sbjct: 10  SHVPKFGNWENDNVPYTAFFDNARKEKG-GVMINPNDPQENPEAFMHESEVELSFGRVRL 69

Query: 68  -AVVNQKSIPADNRRHHDGRDYHQRRAIGNSGSEKLSSERSGSDYALLKEAKQSGRKKKN 127
            +V  +K+     +R     D  +  +   S + +  S+RS SDY+LL+ A +  RKK  
Sbjct: 70  NSVCEEKNQMGGIKREPSESDQQKSSSHNKSMTSECGSDRSSSDYSLLQAAYRRDRKKGV 129

Query: 128 SNGAEGMSRFTPTTTVGGKGNRNPRVRR-NNEG-EMMASVPKFGSWDVRDPKSGDGYTAI 187
           + G E     T +T+   + +R  R    +NEG +  ASVPKFG+WD  DP SG+G+T I
Sbjct: 130 AGGEEINYNNTLSTSAVSQNSRQRRGSHPSNEGHQRTASVPKFGAWDEADPTSGEGFTVI 189

Query: 188 FNKVKTEKQIGGSKSP-QAVP--PLMNQTKQPIAK 201
           FN+VK EKQ   +  P   +P  P    T  P +K
Sbjct: 190 FNRVKEEKQAASAAFPFPTIPQQPSPTSTSPPPSK 223

The following BLAST results are available for this feature:

BLAST of Cla004570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIN4_ARATH	2.0e-19	31.40	RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1	[more]

BLAST of Cla004570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0M0_CUCSA	3.3e-93	80.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699040 PE=4 SV=1	[more]
A0A061GGZ7_THECC	9.8e-29	40.97	RPM1 interacting protein 4, putative OS=Theobroma cacao GN=TCM_030331 PE=4 SV=1	[more]
A0A0B0Q117_GOSAR	4.5e-26	39.25	RPM1-interacting 4-like protein OS=Gossypium arboreum GN=F383_15209 PE=4 SV=1	[more]
B9RXE0_RICCO	1.0e-25	36.87	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0902970 PE=4 SV=1	[more]
A0A0D2SV69_GOSRA	2.2e-25	38.46	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G185300 PE=4 SV=1	[more]

BLAST of Cla004570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118177\|ref\|XP_008458983.1\|	1.7e-98	83.94	PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]	[more]
gi\|778664446\|ref\|XP_011660296.1\|	4.7e-93	80.73	PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus]	[more]
gi\|590626635\|ref\|XP_007026224.1\|	1.4e-28	40.97	RPM1 interacting protein 4, putative [Theobroma cacao]	[more]
gi\|728851071\|gb\|KHG30514.1\|	6.5e-26	39.25	RPM1-interacting 4 -like protein [Gossypium arboreum]	[more]
gi\|1000967515\|ref\|XP_015574210.1\|	1.1e-25	37.21	PREDICTED: RPM1-interacting protein 4 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045087	innate immune response
biological_process	GO:0002237	response to molecule of bacterial origin
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009626	plant-type hypersensitive response
biological_process	GO:0034051	negative regulation of plant-type hypersensitive response
biological_process	GO:0002376	immune system process
biological_process	GO:0009816	defense response to bacterium, incompatible interaction
biological_process	GO:0010204	defense response signaling pathway, resistance gene-independent
biological_process	GO:0006952	defense response
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0019897	extrinsic component of plasma membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU53562	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004570	Cla004570.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU53562	WMU53562	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 146..177 score: 9.4
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 1..193 score: 4.1
None	No IPR available	PANTHER	PTHR33159:SF8	SUBFAMILY NOT NAMED	coord: 1..193 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004570	Cla97C01G010030	Watermelon (97103) v2	wmwmbB247
Cla004570	Csa1G699040	Cucumber (Chinese Long) v2	cuwmB044
Cla004570	MELO3C021706	Melon (DHL92) v3.5.1	mewmB156
Cla004570	ClCG01G009910	Watermelon (Charleston Gray)	wcgwmB157
Cla004570	CSPI01G33990	Wild cucumber (PI 183967)	cpiwmB045
Cla004570	Cucsa.332480	Cucumber (Gy14) v1	cgywmB599
Cla004570	CmoCh18G005620	Cucurbita moschata (Rifu)	cmowmB377
Cla004570	Lsi02G010850	Bottle gourd (USVL1VR-Ls)	lsiwmB206
Cla004570	Cp4.1LG02g09510	Cucurbita pepo (Zucchini)	cpewmB575
Cla004570	CsGy1G032510	Cucumber (Gy14) v2	cgybwmB045
Cla004570	MELO3C021706.2	Melon (DHL92) v3.6.1	medwmB151
Cla004570	CsaV3_1G045860	Cucumber (Chinese Long) v3	cucwmB051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004570	Cucurbita maxima (Rimu)	cmawmB380
Cla004570	Cucurbita moschata (Rifu)	cmowmB373
Cla004570	Cucurbita pepo (Zucchini)	cpewmB514