Lsi01G018930 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G018930
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Small GTP-binding protein
Location	chr01 : 21875176 .. 21879906 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAACTATAAAAAAAGAAAAACATGGAACATAAAAGATGAATGAGGTGACGGTGAGTACGATGAACGGCGGAGATTGAAAATGACAACGAAATTGGTAATGCAATTGCATTTGAAGCCTAATTTTACACGGTAAGGGCCACAAAACCGTTGGTGAGACCCCACAATGGCCGTTGTTTCATTTCCACTTCTCGCTCTCTTTTCAATCTCTCTTCTTCTTTTCATTCTCTTCATTTCCAGCTTCCCAAAATCCACACACTATTCTCTCAATTTCCCTTCAAACCCCAGCTCTGATTTCATTCCCCTTCCCAACTATTTTGCCCACATTTCTCTTTTACGGTCGATTTTTGAGGGATTTGGGCAAATTTGGTTTGAGTTGTGATGTTGTTATGCGTCTAATCTGCGTGTTTTAGAGGTGGGGTTTGTGGGATTTTTTGAGAGAAAGATAATGTCGAATCTATATGGGGATTATAACCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCTGTAGGCAAAACCCAACTCCTTGCTCGATTTTCTCGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCCGGACAAGAAAGGTTTGTGCCCCCCTTTTTTTCTTTTGTGGGGTTCATTGGTTTTTGTGGAGACTACTTCATTGTTCAAGGTTTGGATCTGTCATAGCTTTTAAAATTGGCAAAATGAAAATGTGCTTTTGAGCTTTTGTGGTAATTATTAGGTTTAATAAATGAATGAATGAATGTATGTATGATAGAAGATAGAATTAGACAACAAGGAGTTCGGAATCCTTGAATAGAATTATAACTTGTTTTGTTGTTGTTGTTGTTGTTCTCTGTACTTTTAAATCCACAGAGGATGCAGATACCCTATTGGTGTTTGAATGCAGTTGTTGTGATTGGAATTGTGTTGGGGTAAAAGTTTTAACTCAACTTTTTTAAATTGGCCTAGTCTACTCTCAATTGTAGTATTTGGATTGGAAGGAATGTCAGTAATGGTGAAAAACCAAGCCTTAGGAGAATATCATCTGAAGAAGTGAAACATGGTGTTAGAAAATGGTGTCTAGTTGAAATTGTTTCTCACTCATTTTTGAATTGTTCTTAGGCAGATTTCCTCCTCGGTTTATGTTGTCGATATTAGGTTTTGCTGTTTTTATCATATTTGGCTAATCTTGTTCCGTTTCAGATTAAATGAAATTGTTGTGATAGGACTAGTAAGCCGTAGGTTTGTTTTACATATGATCACAAAAGAAATAAGAGAATGAGTTGCTAGAAGAAAGCTAATGTGAAGGTGAAGGGTGCGAGATATGTCCGACAGAGATAGTTTGGCGTAGCGTGGCCCAACAATGGGAATCCATATAAAAGGGGAGAGAGGTAATGCATACATGTGAGATAAAGAAGATGAAAGAAGCTGGGAGAGTTGTGAAAAAGCTGAGCGAAGTCAGGGGGGAGGCATCTCTCAAGGTTGCAACATTTCATAGTTTGGTTCAGAAGATTAATACAAAAGTGTCTTTACTATTTCAAAAGTTCGATCAAATTGCTATTAGAGCATTTTCTCAGGGATTCCTTGATTGAAAAAATTGCAATTTGGGTCGGTTGTTGGAAAGCCCTAAACACTTGGGTAATAGAAAAGAATACTGTCCTTTGGTCGATGGGGGATCAATAAATTGCTGCAGTAAAAGGGAGGTGGAATGACTGGTGCTGAATAATGACATTCTTGACAAGGGGAGGAAGGTGATTGTTGAACAGTTTAATGAAGGAGAGATTAGTAAGACAGCGAGGAGGAAGACAAGCGTCACCTACAAGAAGTCTAAAGCTGGCTCAATTCGATGGAGCTTTTCCATATGGATGGATGAATCTTTCAATCAAAGGGTTATTTCAAGGTTTTCAGCAAAATGGATGCAAGTTCTGGTGATCAGTATGGTGACTGGCGAGAGAGGGTCTTGCTTGGTATCGCTTGATGGAGAGTCATCAATCTTTCTGGCACCAGGTGAAGTTCAAGCTGGTGATGATTGCTCGATTTCTTACATTGCAGTAAAGTACACTATTTGAGCATTTATTATCTTTCCAACTTAAGGGCAGCTTGCGTGAGTATAGGAAGATGTTGGAAATTATGACTGATGTTGAGTTGCACCAGGGCAGAAAGTAGGGTGTATGTTTCCGGTCTGAGATATATCGATAGTTGATCTGCCACTAAGCAAGAACAAGGAGCTGAAAACCTTTTTTTGTCCAGGACAATACGAAAGAATAATATCGTCAGGGTCAGGGATGTATAACTACCCCATTTCAGCTATTGTATGGCAAACCCCTCCCCCTGCTTCGCTGTACAACCATCTTGTTAAGAAATCAACAATCAAAGATAAACAGATAATGTAAAAAGTAGAGAATCGACACAAATTTTCAGGGTTCACTACTAGTGTGTTAGCTATGTCCATGAGCAGAGGGAGAGAGGAATTTATTGTTAGATATAAAATATCAGATTAAAAGTTAGAGGCGGTAGTAAGGTTAGAGAGTTTATATAGCGCACTCCTCACCTTAGGGCCAAAATCGTAAATAGCGTAAATAACATAAATACAAATACAACTTAGGTTTCAGGGGCGTTGGTCATTCAAAGCGCTAGATAACATATTCAAGACATTCCAACACTTCTGTCATCGAGGACCAAACTCTTACAAAACTATTATGCTCCATGCTTTGGATGATATTAAGTCTCAGCTCCTCCGGGACCAGCAGATTATGAAGGGAAGTGCCAACAAGCACAGATAAGACATTACTTTAAGATTGGGGACATAACATTCTTACTCAAGCCTGAAGCCACTAAACAATTTCTTATGTTATTTCTTTCCCGTCCCTCTACTTATAATGAATCCCTGCTATCAAACTCCTTAGCAATTACTAAGGGTGCATTTGGTCAGTGATCTGAAAATAAGAGACTCAGAAGTTTTCAGTGTTTTCAAATATGCAGTTAGTAGTTAGTACTAGATTTATAAACTATATCCCAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAATAGGAACTATATCTCATATTTTAAACGTTGTTCAAAGTGTGTTTGGTAATATATTAATAAGCAAAAGAATTAATAGGCCACAAGTTCGTTTGTTGTATTCTAGGAAGAAGATGAAAGGATAAAGTAACCATTAGAAAGCTAATCATAAAGAGTGGGTTATGAAGGGACAAGTTTGTTAGGAGTAGCGGGGCCAGGCTCACCTTTTGTAATTTCGTTATCATTAGATGGGAACACAAATGTATGGGGAGTGAGAAGGCATAATGTGAGTGAAGGGAAAGGGAAGAGTTATGGAAAAGCTGAGGGAAATTGAGGAAAGTTGTGGACCTCTCTAAAGTTTCACTACCTTAAATACTTTTGTTTTGCATGAAGAAAATGTTGTAAAATGATGATCCATTTATCAACTTTTTCTGGCTTTGATACATATAATTAAATCCCTTCAGTTAGGTTTGAGACCGTCAAGTAATGATATCTTGAATCCAATCAATAATCTGTATTCATTACTGTTTTTGTCTGACATCTTTGCAATAGATGTATTGCATTGATGAAATCTTTGTATTATCACTCCACAAAATATTGTATTTTTAGGTTCATCTACTCTTAAATTCATAATTAAACATCCTCGTTGTTGTATGATTTTCAGACATTAAACAAGTTTGGCATGTGGAATACTAGGAGTCTGGTATCAACAATTTAGTATTTGTATTTAAGGCTTATATATTGTAATATTTTCCATTTGGTTGCTGATATATTCCGCTTTACGTATTTCATTCGGCGTTTATCAATTTTGACAACCGATCCAACATTGTATCTGATGAAATAGCACCCGTAAATTTGACGTTGTTACGTACTTAATTCGTGATATTGCTGTTAAGTTTGCTATAGTTTCTGAAAATATGTCGTTTTTCACATTGCCAGGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTAGTTTACGATATGACGAAGCGCCAGTCATTCGATCACATGGCAAGGTGGCTGGAGGAACTAAGAGGACATGCTGATAAGAACATTGTTATAATGCTCATTGGAAACAAATGCGACTTAGGAAGTCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCTGAAAGAGAAAACCTGTTCTTTATGGAGACATCGGCTCTGGAGTCGACGAATGTCGAAACTGCATTCTTCACAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAAAGTCTTGCAGCTGGGGAAGCGATAGATATTGGTTCGAATCCAGGGCTGTTTAAAGGGACTAGTATAGTTGTTCCTGGACAGGACCAGGATTCTGGGAGAAAAGGGTGTTGCTTTGCCTCATGAATTTCACATAATTCCATAATCATTTCAGTTGTGACATTGTTTTTCTATTCCACTTGGATTTATACTAAGAAAAAAAAAATCAAGTATTAGTAATTTCTAGAATGACTGGCTTGATACCATGGATGAAGGATTAGTTAAGCTATGATCTCTCTCTCTCTCTCTCTCTGAAGAATTTTTTTTTTAGAATAATTATTTTCCCAGCCCAAGCTAGACTGAAAGCAAAAGTTTCAACAAAAGCCAAC

mRNA sequence

AATAACTATAAAAAAAGAAAAACATGGAACATAAAAGATGAATGAGGTGACGGTGAGTACGATGAACGGCGGAGATTGAAAATGACAACGAAATTGGTAATGCAATTGCATTTGAAGCCTAATTTTACACGGTAAGGGCCACAAAACCGTTGGTGAGACCCCACAATGGCCGTTGTTTCATTTCCACTTCTCGCTCTCTTTTCAATCTCTCTTCTTCTTTTCATTCTCTTCATTTCCAGCTTCCCAAAATCCACACACTATTCTCTCAATTTCCCTTCAAACCCCAGCTCTGATTTCATTCCCCTTCCCAACTATTTTGCCCACATTTCTCTTTTACGGTCGATTTTTGAGGGATTTGGGCAAATTTGGTTTGAGTTGTGATGTTGTTATGCGTCTAATCTGCGTGTTTTAGAGGTGGGGTTTGTGGGATTTTTTGAGAGAAAGATAATGTCGAATCTATATGGGGATTATAACCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCTGTAGGCAAAACCCAACTCCTTGCTCGATTTTCTCGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCCGGACAAGAAAGGCAGATTTCCTCCTCGGTTTATGTTGTCGATATTAGGTTTTGCTGTTTTTATCATATTTGGCTAATCTTGTTCCGTTTCAGATTAAATGAAATTGTTGTGATAGGACTAGGGAGGAAGGTGATTGTTGAACAGTTTAATGAAGGAGAGATTAGTAAGACAGCGAGGAGGAAGACAAGCGTCACCTACAAGAAGTCTAAAGCTGGCTCAATTCGATGGAGCTTTTCCATATGGATGGATGAATCTTTCAATCAAAGGGTTATTTCAAGGTTTTCAGCAAAATGGATGCAAGTTCTGGTGATCAGTATGGTGACTGGCGAGAGAGGGTCTTGCTTGGTATCGCTTGATGGAGAGTCATCAATCTTTCTGGCACCAGGTGAAGTTCAAGCTGGTGATGATTGCTCGATTTCTTACATTGCAGTAAAGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTAGTTTACGATATGACGAAGCGCCAGTCATTCGATCACATGGCAAGGTGGCTGGAGGAACTAAGAGGACATGCTGATAAGAACATTGTTATAATGCTCATTGGAAACAAATGCGACTTAGGAAGTCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCTGAAAGAGAAAACCTGTTCTTTATGGAGACATCGGCTCTGGAGTCGACGAATGTCGAAACTGCATTCTTCACAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAAAGTCTTGCAGCTGGGGAAGCGATAGATATTGGTTCGAATCCAGGGCTGTTTAAAGGGACTAGTATAGTTGTTCCTGGACAGGACCAGGATTCTGGGAGAAAAGGGTGTTGCTTTGCCTCATGAATTTCACATAATTCCATAATCATTTCAGTTGTGACATTGTTTTTCTATTCCACTTGGATTTATACTAAGAAAAAAAAAATCAAGTATTAGTAATTTCTAGAATGACTGGCTTGATACCATGGATGAAGGATTAGTTAAGCTATGATCTCTCTCTCTCTCTCTCTCTGAAGAATTTTTTTTTTAGAATAATTATTTTCCCAGCCCAAGCTAGACTGAAAGCAAAAGTTTCAACAAAAGCCAAC

Coding sequence (CDS)

ATGTCGAATCTATATGGGGATTATAACCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCTGTAGGCAAAACCCAACTCCTTGCTCGATTTTCTCGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCCGGACAAGAAAGGCAGATTTCCTCCTCGGTTTATGTTGTCGATATTAGGTTTTGCTGTTTTTATCATATTTGGCTAATCTTGTTCCGTTTCAGATTAAATGAAATTGTTGTGATAGGACTAGGGAGGAAGGTGATTGTTGAACAGTTTAATGAAGGAGAGATTAGTAAGACAGCGAGGAGGAAGACAAGCGTCACCTACAAGAAGTCTAAAGCTGGCTCAATTCGATGGAGCTTTTCCATATGGATGGATGAATCTTTCAATCAAAGGGTTATTTCAAGGTTTTCAGCAAAATGGATGCAAGTTCTGGTGATCAGTATGGTGACTGGCGAGAGAGGGTCTTGCTTGGTATCGCTTGATGGAGAGTCATCAATCTTTCTGGCACCAGGTGAAGTTCAAGCTGGTGATGATTGCTCGATTTCTTACATTGCAGTAAAGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTAGTTTACGATATGACGAAGCGCCAGTCATTCGATCACATGGCAAGGTGGCTGGAGGAACTAAGAGGACATGCTGATAAGAACATTGTTATAATGCTCATTGGAAACAAATGCGACTTAGGAAGTCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCTGAAAGAGAAAACCTGTTCTTTATGGAGACATCGGCTCTGGAGTCGACGAATGTCGAAACTGCATTCTTCACAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAAAGTCTTGCAGCTGGGGAAGCGATAGATATTGGTTCGAATCCAGGGCTGTTTAAAGGGACTAGTATAGTTGTTCCTGGACAGGACCAGGATTCTGGGAGAAAAGGGTGTTGCTTTGCCTCATGA

Protein sequence

MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERQISSSVYVVDIRFCCFYHIWLILFRFRLNEIVVIGLGRKVIVEQFNEGEISKTARRKTSVTYKKSKAGSIRWSFSIWMDESFNQRVISRFSAKWMQVLVISMVTGERGSCLVSLDGESSIFLAPGEVQAGDDCSISYIAVKYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGSNPGLFKGTSIVVPGQDQDSGRKGCCFAS

Homology

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BLAST of Lsi01G018930 vs. Swiss-Prot
Match: RAA4D_ARATH (Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.7e-61
Identity = 118/145 (81.38%), Postives = 127/145 (87.59%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WLEELRGHADKNIVIMLIGNKCDLGSL
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIMLIGNKCDLGSL 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRIISKKSL A +  D   
Sbjct: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKSLTADDD-DADG 195

Query: 337 NPGLFKGTSIVVPGQDQDSGRKGCC 362
           N  L KGT I++P + +   R GCC
Sbjct: 196 NSSLLKGTRIIIPSEQESGKRGGCC 219

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BLAST of Lsi01G018930 vs. Swiss-Prot
Match: RLGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 231.1 bits (588), Expect = 1.9e-59
Identity = 115/148 (77.70%), Postives = 125/148 (84.46%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGHADKNIVIMLIGNK DLG+L
Sbjct: 79  RYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTL 138

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           R VPTEDA+EFAERENLFFMETSALESTNVE AF T+LTEIYRI+SKK+L A E +D   
Sbjct: 139 RVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSG 198

Query: 337 NPGLFKGTSIVVPGQDQDSGRKGCCFAS 365
           N  L KGT IVVPGQ+     K  C  S
Sbjct: 199 NSSLLKGTKIVVPGQEPAPPTKASCCMS 226

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BLAST of Lsi01G018930 vs. Swiss-Prot
Match: RAA4C_ARATH (Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 4.8e-58
Identity = 111/148 (75.00%), Postives = 128/148 (86.49%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGHADKNIVIMLIGNK DLG+L
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKTDLGTL 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDA+EFA+RENLFFMETSAL+S NVE +F T+LTEIYRI+SKK+L A E  + G 
Sbjct: 136 RAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKKNLVANEEGESGG 195

Query: 337 NPGLFKGTSIVVPGQDQDSGRKGCCFAS 365
           +  L +GT IVV G++ +S  KGCC  S
Sbjct: 196 DSSLLQGTKIVVAGEETESKGKGCCGTS 223

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BLAST of Lsi01G018930 vs. Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.1e-50
Identity = 103/150 (68.67%), Postives = 124/150 (82.67%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWLEELR HADKNIVI+LIGNKCDL + 
Sbjct: 78  RYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQ 137

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           R VPTEDA+EFAE+E LFF+ETSALE+TNVE+AF T+LTEIY I++KKSLAA E+   G+
Sbjct: 138 RDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGNGN 197

Query: 337 NPGLFKGTSIVVPGQDQD--SGRKGCCFAS 365
           +  L  G  I++PG  Q+  + R  CC AS
Sbjct: 198 SASL-SGQKIIIPGPAQEIPAKRNMCCQAS 226

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BLAST of Lsi01G018930 vs. Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.8e-48
Identity = 97/146 (66.44%), Postives = 116/146 (79.45%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWLEELR HAD+NIVIML GNK DL   
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQ 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDA+EFA++E LFF+ETSA+E+T +E AF T+LTEI+ I++KK+LAA E     S
Sbjct: 136 RAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADEN-QSNS 195

Query: 337 NPGLFKGTSIVVPGQDQ-DSGRKGCC 362
           NP    G  I+VPG  Q   G+K CC
Sbjct: 196 NPASLTGKKILVPGPGQVIPGKKACC 220

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BLAST of Lsi01G018930 vs. TrEMBL
Match: A0A0A0KW90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152280 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.8e-75
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGE IDIGS
Sbjct: 136 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGS 195

Query: 337 NPGLFKGTSIVVPGQDQDSGRKGCCFAS 365
           NP LFKGTSIVVPGQDQDSGRKGCCFAS
Sbjct: 196 NPALFKGTSIVVPGQDQDSGRKGCCFAS 223

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BLAST of Lsi01G018930 vs. TrEMBL
Match: A0A067F1B3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027382mg PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.6e-63
Identity = 123/149 (82.55%), Postives = 135/149 (90.60%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHADKNIVIMLIGNKCDLGSL
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDAQEFA+RENLFFMETSALE+TNVETAF T+LTEIYRIISKKSL A +  D+  
Sbjct: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAG 195

Query: 337 NPGLFKGTSIVVPGQDQDS-GRKGCCFAS 365
           N  L KGT I+VPGQDQ+S  ++GCC +S
Sbjct: 196 NSNLLKGTRIIVPGQDQNSASKRGCCLSS 224

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BLAST of Lsi01G018930 vs. TrEMBL
Match: V4S363_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005824mg PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.6e-63
Identity = 123/149 (82.55%), Postives = 135/149 (90.60%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHADKNIVIMLIGNKCDLGSL
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDAQEFA+RENLFFMETSALE+TNVETAF T+LTEIYRIISKKSL A +  D+  
Sbjct: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAG 195

Query: 337 NPGLFKGTSIVVPGQDQDS-GRKGCCFAS 365
           N  L KGT I+VPGQDQ+S  ++GCC +S
Sbjct: 196 NSNLLKGTRIIVPGQDQNSASKRGCCLSS 224

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BLAST of Lsi01G018930 vs. TrEMBL
Match: B9T2D5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0405720 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 3.8e-62
Identity = 122/149 (81.88%), Postives = 131/149 (87.92%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL
Sbjct: 75  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 134

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVP EDAQEFA+RENLFFMETSALESTNVETAF T+LTEIYR+ISKK+L A E +D   
Sbjct: 135 RAVPIEDAQEFAQRENLFFMETSALESTNVETAFLTVLTEIYRVISKKTLTANEELDTNG 194

Query: 337 NPGLFKGTSIVVPGQDQDSGRK-GCCFAS 365
             GL KGT I+VPG DQ   +K GCC +S
Sbjct: 195 TSGLLKGTRIIVPGHDQAPAKKGGCCMSS 223

[Close]

BLAST of Lsi01G018930 vs. TrEMBL
Match: A0A061EWF7_THECC (RAB GTPase A4D OS=Theobroma cacao GN=TCM_024843 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 4.9e-62
Identity = 122/145 (84.14%), Postives = 131/145 (90.34%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDAQEFA+RENLFFMETSALESTNVETAF T+LTEIYRIISKK+LAA + +D   
Sbjct: 136 RAVPTEDAQEFAQRENLFFMETSALESTNVETAFLTVLTEIYRIISKKTLAANDELDPNG 195

Query: 337 NPGLFKGTSIVVPGQDQDSGRKGCC 362
           N GL KGT I+VP Q+  + RKG C
Sbjct: 196 NSGLLKGTRIIVPNQELQTERKGGC 220

[Close]

BLAST of Lsi01G018930 vs. TAIR10
Match: AT3G12160.1 (AT3G12160.1 RAB GTPase homolog A4D)

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-62
Identity = 118/145 (81.38%), Postives = 127/145 (87.59%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WLEELRGHADKNIVIMLIGNKCDLGSL
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIMLIGNKCDLGSL 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRIISKKSL A +  D   
Sbjct: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKSLTADDD-DADG 195

Query: 337 NPGLFKGTSIVVPGQDQDSGRKGCC 362
           N  L KGT I++P + +   R GCC
Sbjct: 196 NSSLLKGTRIIIPSEQESGKRGGCC 219

[Close]

BLAST of Lsi01G018930 vs. TAIR10
Match: AT5G47960.1 (AT5G47960.1 RAB GTPase homolog A4C)

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-59
Identity = 111/148 (75.00%), Postives = 128/148 (86.49%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGHADKNIVIMLIGNK DLG+L
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKTDLGTL 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDA+EFA+RENLFFMETSAL+S NVE +F T+LTEIYRI+SKK+L A E  + G 
Sbjct: 136 RAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKKNLVANEEGESGG 195

Query: 337 NPGLFKGTSIVVPGQDQDSGRKGCCFAS 365
           +  L +GT IVV G++ +S  KGCC  S
Sbjct: 196 DSSLLQGTKIVVAGEETESKGKGCCGTS 223

[Close]

BLAST of Lsi01G018930 vs. TAIR10
Match: AT5G65270.1 (AT5G65270.1 RAB GTPase homolog A4A)

HSP 1 Score: 189.5 bits (480), Expect = 3.6e-48
Identity = 99/148 (66.89%), Postives = 117/148 (79.05%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYD+T+RQ+FDH+ RWLEELR HADKNIVI+LIGNK DL   
Sbjct: 78  RYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVIILIGNKSDLVDQ 137

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RA+PTEDA+EFAE+E LFF+ETSA  +TNVE+AF T+LTEI+ I++KKSLAA E  + G 
Sbjct: 138 RAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKSLAASEDQENG- 197

Query: 337 NPGLFKGTSI-VVPGQDQDSGRKG--CC 362
           NPG   G  I +VPG  Q    K   CC
Sbjct: 198 NPGSLAGKKIDIVPGPGQVIPNKSNMCC 224

[Close]

BLAST of Lsi01G018930 vs. TAIR10
Match: AT4G39990.1 (AT4G39990.1 RAB GTPase homolog A4B)

HSP 1 Score: 187.2 bits (474), Expect = 1.8e-47
Identity = 95/151 (62.91%), Postives = 120/151 (79.47%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYDMTKR++F+H+ RWLEELR HADKNIVI+LIGNK DL   
Sbjct: 78  RYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVIILIGNKSDLEDQ 137

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAA-GEAIDIG 336
           RAVPTEDA+EFAE+E LFF+ETSAL +TNVE +F T++T+IY  ++KK+LA+ G++    
Sbjct: 138 RAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKNLASEGDS---- 197

Query: 337 SNPGLFKGTSIVVPGQDQDSGRK--GCCFAS 365
           +NPG   G  I++PG  Q+   K   CC +S
Sbjct: 198 NNPGSLAGKKILIPGSGQEIPAKTSTCCTSS 224

[Close]

BLAST of Lsi01G018930 vs. TAIR10
Match: AT1G09630.1 (AT1G09630.1 RAB GTPase 11C)

HSP 1 Score: 171.8 bits (434), Expect = 7.8e-43
Identity = 86/148 (58.11%), Postives = 115/148 (77.70%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRA+TSAYYRGA+GA+LVYD+TK  +F++++RWL+ELR HAD NIVIMLIGNK DL  L
Sbjct: 73  RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHL 132

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAV TEDAQ +AE+E L F+ETSALE+ NVE AF TIL+E+YRIISKKS+++ +     +
Sbjct: 133 RAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTT---A 192

Query: 337 NPGLFKGTSIVVPGQDQDSGRKGCCFAS 365
           N  + +G +I V    + + +K CC +S
Sbjct: 193 NANIKEGQTIDVAATSESNAKKPCCSSS 217

[Close]

BLAST of Lsi01G018930 vs. NCBI nr
Match: gi|449464898|ref|XP_004150166.1| (PREDICTED: ras-related protein RABA4d [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 2.5e-75
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGE IDIGS
Sbjct: 136 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGS 195

Query: 337 NPGLFKGTSIVVPGQDQDSGRKGCCFAS 365
           NP LFKGTSIVVPGQDQDSGRKGCCFAS
Sbjct: 196 NPALFKGTSIVVPGQDQDSGRKGCCFAS 223

[Close]

BLAST of Lsi01G018930 vs. NCBI nr
Match: gi|659121765|ref|XP_008460801.1| (PREDICTED: ras-related protein RABA4d [Cucumis melo])

HSP 1 Score: 287.7 bits (735), Expect = 2.8e-74
Identity = 143/148 (96.62%), Postives = 145/148 (97.97%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGE IDIGS
Sbjct: 136 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGS 195

Query: 337 NPGLFKGTSIVVPGQDQDSGRKGCCFAS 365
           NP LFKGT+IVVPGQDQDSG KGCCFAS
Sbjct: 196 NPALFKGTNIVVPGQDQDSGTKGCCFAS 223

[Close]

BLAST of Lsi01G018930 vs. NCBI nr
Match: gi|1009106042|ref|XP_015866809.1| (PREDICTED: ras-related protein RABA4d-like [Ziziphus jujuba])

HSP 1 Score: 251.9 bits (642), Expect = 1.7e-63
Identity = 128/150 (85.33%), Postives = 136/150 (90.67%), Query Frame = 1


Query: 214 IAVKYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDL 273
           + V YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDL
Sbjct: 10  VIVAYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDL 69

Query: 274 GSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAID 333
           GSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRIISKK+L A + ID
Sbjct: 70  GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKTLTASDDID 129

Query: 334 IGSNPGLFKGTSIVVPGQDQDS-GRKGCCF 363
             +  GL KGT I+VPGQ+QDS G KGCCF
Sbjct: 130 -SNGSGLLKGTKIIVPGQEQDSGGGKGCCF 158

[Close]

BLAST of Lsi01G018930 vs. NCBI nr
Match: gi|1009106149|ref|XP_015872112.1| (PREDICTED: ras-related protein RABA4d [Ziziphus jujuba])

HSP 1 Score: 251.1 bits (640), Expect = 2.9e-63
Identity = 127/147 (86.39%), Postives = 135/147 (91.84%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRIISKK+L A + ID  +
Sbjct: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKTLTASDDID-SN 195

Query: 337 NPGLFKGTSIVVPGQDQDS-GRKGCCF 363
             GL KGT I+VPGQ+QDS G KGCCF
Sbjct: 196 GSGLLKGTKIIVPGQEQDSGGGKGCCF 221

[Close]

BLAST of Lsi01G018930 vs. NCBI nr
Match: gi|567857618|ref|XP_006421492.1| (hypothetical protein CICLE_v10005824mg [Citrus clementina])

HSP 1 Score: 250.8 bits (639), Expect = 3.8e-63
Identity = 123/149 (82.55%), Postives = 135/149 (90.60%), Query Frame = 1


Query: 217 KYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSL 276
           +YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHADKNIVIMLIGNKCDLGSL
Sbjct: 76  RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135

Query: 277 RAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEAIDIGS 336
           RAVPTEDAQEFA+RENLFFMETSALE+TNVETAF T+LTEIYRIISKKSL A +  D+  
Sbjct: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAG 195

Query: 337 NPGLFKGTSIVVPGQDQDS-GRKGCCFAS 365
           N  L KGT I+VPGQDQ+S  ++GCC +S
Sbjct: 196 NSNLLKGTRIIVPGQDQNSASKRGCCLSS 224

The following BLAST results are available for this feature:

BLAST of Lsi01G018930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAA4D_ARATH	2.7e-61	81.38	Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1	[more]
RLGP1_ORYSJ	1.9e-59	77.70	Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2	[more]
RAA4C_ARATH	4.8e-58	75.00	Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1	[more]
RB11A_LOTJA	2.1e-50	68.67	Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1	[more]
RB11C_TOBAC	5.8e-48	66.44	Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1	[more]

BLAST of Lsi01G018930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW90_CUCSA	1.8e-75	97.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152280 PE=4 SV=1	[more]
A0A067F1B3_CITSI	2.6e-63	82.55	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027382mg PE=4 SV=1	[more]
V4S363_9ROSI	2.6e-63	82.55	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005824mg PE=4 SV=1	[more]
B9T2D5_RICCO	3.8e-62	81.88	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0405720 PE=4 SV=1	[more]
A0A061EWF7_THECC	4.9e-62	84.14	RAB GTPase A4D OS=Theobroma cacao GN=TCM_024843 PE=4 SV=1	[more]

BLAST of Lsi01G018930 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12160.1	1.5e-62	81.38	RAB GTPase homolog A4D	[more]
AT5G47960.1	2.7e-59	75.00	RAB GTPase homolog A4C	[more]
AT5G65270.1	3.6e-48	66.89	RAB GTPase homolog A4A	[more]
AT4G39990.1	1.8e-47	62.91	RAB GTPase homolog A4B	[more]
AT1G09630.1	7.8e-43	58.11	RAB GTPase 11C	[more]

BLAST of Lsi01G018930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464898\|ref\|XP_004150166.1\|	2.5e-75	97.97	PREDICTED: ras-related protein RABA4d [Cucumis sativus]	[more]
gi\|659121765\|ref\|XP_008460801.1\|	2.8e-74	96.62	PREDICTED: ras-related protein RABA4d [Cucumis melo]	[more]
gi\|1009106042\|ref\|XP_015866809.1\|	1.7e-63	85.33	PREDICTED: ras-related protein RABA4d-like [Ziziphus jujuba]	[more]
gi\|1009106149\|ref\|XP_015872112.1\|	2.9e-63	86.39	PREDICTED: ras-related protein RABA4d [Ziziphus jujuba]	[more]
gi\|567857618\|ref\|XP_006421492.1\|	3.8e-63	82.55	hypothetical protein CICLE_v10005824mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR005225	Small_GTP-bd_dom
IPR001806	Small_GTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0008150	biological_process
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0080092	regulation of pollen tube growth
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0009827	plant-type cell wall modification
biological_process	GO:0008152	metabolic process
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0045177	apical part of cell
cellular_component	GO:0070382	exocytic vesicle
cellular_component	GO:0090404	pollen tube tip
cellular_component	GO:0005768	endosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0019900	kinase binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018930.1	Lsi01G018930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 217..318 score: 4.0E-31coord: 17..78 score: 4.8
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 217..312 score: 1.1E-13coord: 15..95 score: 6.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 217..328 score: 6.9E-37coord: 9..76 score: 3.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 217..323 score: 3.25E-29coord: 11..98 score: 1.43
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 16..37 score: 4.2E-21coord: 57..79 score: 4.2E-21coord: 39..55 score: 4.2
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 8..77 score: 1.1E-157coord: 219..363 score: 1.1E
None	No IPR available	PANTHER	PTHR24073:SF578	RAS-RELATED PROTEIN RABA4D	coord: 8..77 score: 1.1E-157coord: 219..363 score: 1.1E
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 13..320 score: 8.
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 18..316 score: 1.
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 16..320 score: 3.1
None	No IPR available	PROFILE	PS51419	RAB	coord: 11..361 score: 28

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G018930	Csa4G152280	Cucumber (Chinese Long) v2	culsiB260
Lsi01G018930	CSPI04G10370	Wild cucumber (PI 183967)	cpilsiB259
Lsi01G018930	Cucsa.038020	Cucumber (Gy14) v1	cgylsiB012
Lsi01G018930	CmaCh03G000800	Cucurbita maxima (Rimu)	cmalsiB598
Lsi01G018930	CmaCh07G013160	Cucurbita maxima (Rimu)	cmalsiB790
Lsi01G018930	CmoCh03G000810	Cucurbita moschata (Rifu)	cmolsiB583
Lsi01G018930	CmoCh07G013610	Cucurbita moschata (Rifu)	cmolsiB778
Lsi01G018930	Cla000742	Watermelon (97103) v1	lsiwmB153
Lsi01G018930	MELO3C023181	Melon (DHL92) v3.5.1	lsimeB152
Lsi01G018930	ClCG04G000360	Watermelon (Charleston Gray)	lsiwcgB135
Lsi01G018930	MELO3C023181.2	Melon (DHL92) v3.6.1	lsimedB166
Lsi01G018930	Cla97C04G068730	Watermelon (97103) v2	lsiwmbB133
Lsi01G018930	Bhi03G002125	Wax gourd	lsiwgoB185
Lsi01G018930	Cp4.1LG10g11790	Cucurbita pepo (Zucchini)	cpelsiB055
Lsi01G018930	CsGy4G010060	Cucumber (Gy14) v2	cgyblsiB245
Lsi01G018930	Carg22467	Silver-seed gourd	carlsiB170
Lsi01G018930	Carg12738	Silver-seed gourd	carlsiB259
Lsi01G018930	CsaV3_4G010530	Cucumber (Chinese Long) v3	cuclsiB281

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G018930	Silver-seed gourd	carlsiB260
Lsi01G018930	Wax gourd	lsiwgoB173
Lsi01G018930	Cucurbita maxima (Rimu)	cmalsiB792
Lsi01G018930	Cucurbita moschata (Rifu)	cmolsiB780
Lsi01G018930	Cucurbita pepo (Zucchini)	cpelsiB392