Csa4G152280 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G152280
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative Ras-related protein Rab; contains IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)
Location	Chr4 : 8247598 .. 8251818 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCTTCTTCCTTCATTCTCTTCATTTTCCAGCTTCCAAAATCCACACACTATTCTCTCAAATTTTCCCTTCAAACCCCAGCTCTGATTTTCAATTCCCCTCCCAACTATTTTGCCCACATTTCTCTTTTTACGCTCGATTTTATTTTGAGGCATTTGGGCAATTTGGTTTGAGTTGTGATGTTGTTATCCGTCTAATCTGCGTGTTTTAGAGGTGGGGTTTGTGGGATTTTTGAGAGAAAGAGAATGTCGAATCTATATGGGGATTATAATCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCTGTCGGCAAAACCCAGCTCCTTGCTCGATTTTCTCGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTCATTGATCAAAAAACAGTGAAAGCCCAGATATGGGATACTGCAGGACAAGAAAGGTTTGTGCCCCTTTTTTTTTTTCTTTTGTGGGGTTCATTGGTTTTTTAGACTACTTCATTGTTCAAGGAGTTTGGATCTGTGTAAGCTTTTGAAATTCGTAAAATCCAAACGAGCTTTTGAGCTTTTGTAATAATTAATAGGTTGTATATTTTGAATGAATGTATGATACAAGATAGAGTTTGACAACAAGGAGTTTGGAATCCTCCAATAGAATGTCAGTAATGGAAGGAATGTCAGTAATGGTGAAAAACCAAGCCTTAGGAGGATATCATCTGAAGATGTGAAACATGGTGTTTGAAAATGATGTCTGGTTGAAATTGTTTTTCACTCACTTTTTAATTGTCCCTAGGTAGATTTCCTCTTCGGCTTATGTTGATGATATTAGGTTTTGCTGTTTTTATCATATATAACTGCAGCTTTGCTGCAATATTATGCTGTTTCAGATTAAATAAAATTATTGTGATAGGACTAGTAGGCCATGTGTTTGTTTTACATATGCTCAAAAGAGAAATGAGAGAACGAATTTCTAGAAGAAAGCTAATGTGAAGGTGAAAGGGTGCGAGTTATGTCTGATGGAAATAGTTTGGAGTTTGGTGTACTGTGGCCCATCAATGGAAATGCATATAAAACGGGAGAAAAGTAAAGCATAAATGTGAGATAAAGAAGATGAAAGAAGATGGGAGAGTTGTGAAAAAACTGCACGAAGTCACAACGGGGAGTTGGAGGCACCTCTCTAGATAGCAACATTTATGGTTTGGTTCTTGCTAAGTGAAAGGGAGTGAACGACTCTAAAAGAAAAGGGAAGAGAACGATTGGTGAGGAATAAAGCATTCTTGATAAAGGGAAGGTGATCGTTGAACAATTTAATGGGGAGATTAGTAAGACGGGGAAGAGGAAGACAAGCAGCACTGACAAGAAGTCTAAAGCTGGCTCAGTTTTATGGAGTTGTTCCAGATGGATGGATGAATCCTCCAAGCATAAGGTTATGTCAAGGTTATTCAGCAAATAGATGCAAGTTCCGGTGATTAGTATGATGAGATGTTTGATGGGGAGTCATCAGAAACGCCTCAAATTTAAGGGAGAGACATGAATAAATTGAAATCACATCTAAATGAGAGGGATTCTAAGGATATGAAAGACAGTTAAAAAAGGCTAAAACGAATTGAAAGTTACTACCTATACCAATGAAGGCACCTTTCCTTCTGGTGGCTCATTCATAAGAACTCTAAAGTTAAGCATTATTAGTTTAGAGCAATCCTCTGTTGGGTGAGCTTCTAGGGATTTTCATAGGAAGTATTTGAGTGAGGACAAAGTATGTTGAAAGAACTTATATTGGTTTATGGCATAAGCTTTACTCTTAGAATCAGTAGAATGCTAAAAGAATGTTAGATACCTATATTAGTATAGGATTAGGGGTATAAGGGTAGTTAGATATTTAGGAAGTTACTAGTAGTTATTGTGTAAGTGTGGTGTGGTGTGGTTACATGTAGTTATTATGTAATTGTGGTTACTAGGGTGGTTACATCTTGTTATAAATGGAGGGAGGGTAAGTGAGAGGGGGGAATTGGGTGGAGTGATCTAGGGCTTGGGTGAGAGTACACAAGAGGGAGGTTCCAAGTGCCTTATACTTGGGTTTATCTTGTATTTTCTTATAGTTACATTATAATAAATTCAGAGCTTGTTCTTGTTAGGAAGTATCCTAACAAATAACTCATGTTGGCTTATAGGATAGTCTTCACTCGTAGAAGCAATTCAGGATAGGGATGACTCTGTCCAGTGGCAGAGGATGCTAGGGAATGTTGGGATCATCAAGTGTCGAATCCGGATTCTGAATATTAGGTCATCTTGTGTAGGTATAGGAAGATGTTGGATATTCTGACTGATGCTGAGTTGCACCAGTGCAGAAAGTAGGCTATATGTGTCCAGTGTGAGCTCTATCGATAGTTGGTGTACAACCTTCTGTCATCGGGGACCAAACTCTAACAAAAGTATAATGCTGCATTCTTTGGATGCTATTAAGTTTCAGCTCATCTGGGACCAGAAAATTATGAAGGCAGTCCCGAGTTGGTGACAAGGGCTGATAGTCTTAATTTTTAGAATAGGGGCATGACTTTCTAACTCAAGTCTAAACAATTTTTTATGTCATTGCTGCCCCATCCCTCTACTAATGAACCCCTGTTATCAAACCCCTAAGCAACAACTAAGGGTGCATTTGGTAAGTGATCTGGAAACAAGACACTCAATGATTAACAAAGTTGTATTTCTATTTTTCAATGTTTTTAAATATGCAATTAGTACTAGATTTAGAAACTATATCTCAATTTCAAACGTTGTTGAAAGTGGGTTTGGTAATATAGTTATAAATAGAAGAATTAATAGGTCATAAATTCGTCTCTTGTATTCTAAGAAGAAGATGAAGGATAGAGTAACCATTGAAAGGCTAATCATAAAGAGTGTGAGTTATGAAGGGCTTAGCTAGTTAGGAGTATCGGGATCAGGTGCACTTTTTGCAGTTTCGTTATCACTAGATTGGAACACAAATGTATGGGGAGTGAGAAAGGCATAATTTGAGTGAAGGGAAAGGGAAGAGTTGTGGGAAAGCTGAGGGAAGCTGAAGAAAAGTTTTTGTTTTGCATGAAGAAACTGAGGTAAAATTATGATCCATTTATCAACTTTTTTCTGGCTTTGATGCATATAATCCCTTAAGTCAGATTTGAGAACGACAAGTGATGATATCTTGAATCCAATCAATAATCTGTATTCATTACTTTTTTGTATTTCTTCACAATAGATGTAACATTGATGAAATTTTTGCATTATCTCTCAAACAAAATATTGTATGTTTTAAGTATATCTACTCTTAAATTCATAATTAAACAGCCTCGTTGTTGTATAGTTGTCTGGCATGAGACAAGTTTGACTTTTAGAATGCTAGGAGCCCATGCCCTGTGGTATCAACAAGTTAGGATTTGTATTATATTGTAATATTTTCCATTTGGTTGCTGATATCAAAACCAACTTGTGAGTTGCTGATATCGAAACCAATTTATGAGTTTTTGATATCAAAATTGAGTTATAAGTATTATGTTTTCCGTACGTCATTTGGTGTTTGTGTCTGCTATTACGCTAAAAAAGTTCCCATTTTGACTTGATCAGGTTCTTGTTTGAATTGTTATTGGATCCAACATCGTTATCTGATAAAACAGCACACGTAAATTTGACATTTTTATGTACTTGCTTTGTGAATATTGCTGTTAAGTTGACTATAGTTTCTAAAAATATGCCCTTTTCCGCATTGCCAGGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTAGTTTATGATATGACGAAGCGCCAGTCGTTCGACCACATGGCAAGGTGGCTGGAGGAACTTAGAGGGCACGCTGATAAGAACATCGTTATAATGCTCATTGGAAACAAGTGCGATTTAGGAAGTCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCTGAAAGAGAAAACCTGTTCTTCATGGAGACATCGGCTCTGGAGTCCACAAATGTCGAAACTGCATTCTTCACAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAAAGTCTTGCAGCTGGGGAAGAGATAGATATTGGTTCGAATCCAGCCCTGTTTAAAGGGACTAGTATAGTTGTTCCTGGACAAGACCAGGATTCTGGGAGAAAAGGTTGTTGCTTCGCGTCATGA

mRNA sequence

ATGTCGAATCTATATGGGGATTATAATCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCTGTCGGCAAAACCCAGCTCCTTGCTCGATTTTCTCGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTCATTGATCAAAAAACAGTGAAAGCCCAGATATGGGATACTGCAGGACAAGAAAGGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTAGTTTATGATATGACGAAGCGCCAGTCGTTCGACCACATGGCAAGGTGGCTGGAGGAACTTAGAGGGCACGCTGATAAGAACATCGTTATAATGCTCATTGGAAACAAGTGCGATTTAGGAAGTCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCTGAAAGAGAAAACCTGTTCTTCATGGAGACATCGGCTCTGGAGTCCACAAATGTCGAAACTGCATTCTTCACAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAAAGTCTTGCAGCTGGGGAAGAGATAGATATTGGTTCGAATCCAGCCCTGTTTAAAGGGACTAGTATAGTTGTTCCTGGACAAGACCAGGATTCTGGGAGAAAAGGTTGTTGCTTCGCGTCATGA

Coding sequence (CDS)

ATGTCGAATCTATATGGGGATTATAATCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCTGTCGGCAAAACCCAGCTCCTTGCTCGATTTTCTCGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTCATTGATCAAAAAACAGTGAAAGCCCAGATATGGGATACTGCAGGACAAGAAAGGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTAGTTTATGATATGACGAAGCGCCAGTCGTTCGACCACATGGCAAGGTGGCTGGAGGAACTTAGAGGGCACGCTGATAAGAACATCGTTATAATGCTCATTGGAAACAAGTGCGATTTAGGAAGTCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCTGAAAGAGAAAACCTGTTCTTCATGGAGACATCGGCTCTGGAGTCCACAAATGTCGAAACTGCATTCTTCACAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAAAGTCTTGCAGCTGGGGAAGAGATAGATATTGGTTCGAATCCAGCCCTGTTTAAAGGGACTAGTATAGTTGTTCCTGGACAAGACCAGGATTCTGGGAGAAAAGGTTGTTGCTTCGCGTCATGA

Protein sequence

MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS*

Homology

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BLAST of Csa4G152280 vs. Swiss-Prot
Match: RAA4D_ARATH (Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 3.2e-105
Identity = 192/220 (87.27%), Postives = 201/220 (91.36%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WLEELRGHADKN
Sbjct: 61  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCC 221
           SKKSL A ++ D   N +L KGT I++P + +   R GCC
Sbjct: 181 SKKSLTADDD-DADGNSSLLKGTRIIIPSEQESGKRGGCC 219

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BLAST of Csa4G152280 vs. Swiss-Prot
Match: RAA4C_ARATH (Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.2e-96
Identity = 175/223 (78.48%), Postives = 198/223 (88.79%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID
Sbjct: 1   MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           +KT+KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGHADKN
Sbjct: 61  RKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNK DLG+LRAVPTEDA+EFA+RENLFFMETSAL+S NVE +F T+LTEIYRI+
Sbjct: 121 IVIMLIGNKTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIV 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 224
           SKK+L A EE + G + +L +GT IVV G++ +S  KGCC  S
Sbjct: 181 SKKNLVANEEGESGGDSSLLQGTKIVVAGEETESKGKGCCGTS 223

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BLAST of Csa4G152280 vs. Swiss-Prot
Match: RLGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 353.6 bits (906), Expect = 1.6e-96
Identity = 177/219 (80.82%), Postives = 192/219 (87.67%), Query Frame = 1


Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
           YG+  QKIDYVFKVVLIGDSAVGK+QLLARF+RNEF++DSKATIGVEFQT+TL ID +TV
Sbjct: 8   YGEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTV 67

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGHADKNIVIM
Sbjct: 68  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIM 127

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKS 184
           LIGNK DLG+LR VPTEDA+EFAERENLFFMETSALESTNVE AF T+LTEIYRI+SKK+
Sbjct: 128 LIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKN 187

Query: 185 LAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 224
           L A EE+D   N +L KGT IVVPGQ+     K  C  S
Sbjct: 188 LVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 226

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BLAST of Csa4G152280 vs. Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.7e-88
Identity = 167/221 (75.57%), Postives = 188/221 (85.07%), Query Frame = 1


Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
           YGD N KIDYVFKVVLIGDSAVGK+Q+LARF+RNEFS+DSK+TIGVEFQT+TLVID KTV
Sbjct: 7   YGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTV 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWLEELR HADKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKS 184
           LIGNKCDL + R VPTEDA+EFAE+E LFF+ETSALE+TNVE+AF T+LTEIY I++KKS
Sbjct: 127 LIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKS 186

Query: 185 LAAGEEIDIGSNPALFKGTSIVVPGQDQD--SGRKGCCFAS 224
           LAA E    G N A   G  I++PG  Q+  + R  CC AS
Sbjct: 187 LAADESQGNG-NSASLSGQKIIIPGPAQEIPAKRNMCCQAS 226

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BLAST of Csa4G152280 vs. Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.9e-86
Identity = 162/221 (73.30%), Postives = 187/221 (84.62%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           M++ YGD +QKIDYVFKVVLIGDSAVGKTQ+LARF+RNEFS+DSKATIGVEFQT+TLVI 
Sbjct: 1   MASGYGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQ 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            K+VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWLEELR HAD+N
Sbjct: 61  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIML GNK DL   RAVPTEDA+EFA++E LFF+ETSA+E+T +E AF T+LTEI+ I+
Sbjct: 121 IVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIV 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQ-DSGRKGCC 221
           +KK+LAA +E    SNPA   G  I+VPG  Q   G+K CC
Sbjct: 181 NKKNLAA-DENQSNSNPASLTGKKILVPGPGQVIPGKKACC 220

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BLAST of Csa4G152280 vs. TrEMBL
Match: A0A0A0KW90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152280 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 6.4e-121
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 224
           SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 223

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BLAST of Csa4G152280 vs. TrEMBL
Match: V4S363_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005824mg PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 5.9e-106
Identity = 196/224 (87.50%), Postives = 209/224 (93.30%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGK+QLLARF+RNEFSVDSKATIGVEFQTKTL ID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHADKN
Sbjct: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF T+LTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDS-GRKGCCFAS 224
           SKKSL A +E D+  N  L KGT I+VPGQDQ+S  ++GCC +S
Sbjct: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS 224

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BLAST of Csa4G152280 vs. TrEMBL
Match: A0A067F1B3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027382mg PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 5.9e-106
Identity = 196/224 (87.50%), Postives = 209/224 (93.30%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGK+QLLARF+RNEFSVDSKATIGVEFQTKTL ID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHADKN
Sbjct: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF T+LTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDS-GRKGCCFAS 224
           SKKSL A +E D+  N  L KGT I+VPGQDQ+S  ++GCC +S
Sbjct: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS 224

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BLAST of Csa4G152280 vs. TrEMBL
Match: A0A061EWF7_THECC (RAB GTPase A4D OS=Theobroma cacao GN=TCM_024843 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 4.2e-104
Identity = 193/220 (87.73%), Postives = 203/220 (92.27%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSN YGDYNQKIDYVFKVVLIGDSAVGK+QLLARF+RNEFSVDSKATIGVEFQTKTL ID
Sbjct: 1   MSNFYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLAID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALESTNVETAF T+LTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALESTNVETAFLTVLTEIYRII 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCC 221
           SKK+LAA +E+D   N  L KGT I+VP Q+  + RKG C
Sbjct: 181 SKKTLAANDELDPNGNSGLLKGTRIIVPNQELQTERKGGC 220

[Close]

BLAST of Csa4G152280 vs. TrEMBL
Match: A0A0D2NSL7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G140300 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 9.4e-104
Identity = 192/221 (86.88%), Postives = 206/221 (93.21%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQ+IDYVFKVVLIGDSAVGK+QLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQRIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            KTVK+QIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFD+MARWLEELRGHAD+N
Sbjct: 61  NKTVKSQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDNMARWLEELRGHADQN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           +VIML+GNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALESTNVETAFFT+LTEIYRII
Sbjct: 121 LVIMLVGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALESTNVETAFFTVLTEIYRII 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQD-QDSGRKGCC 221
           SKK+L A EE+D   N AL KGT I+VP Q+ Q   R GCC
Sbjct: 181 SKKTLTANEELDPNGNAALLKGTRIIVPNQEMQKDSRGGCC 221

[Close]

BLAST of Csa4G152280 vs. TAIR10
Match: AT3G12160.1 (AT3G12160.1 RAB GTPase homolog A4D)

HSP 1 Score: 382.5 bits (981), Expect = 1.8e-106
Identity = 192/220 (87.27%), Postives = 201/220 (91.36%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WLEELRGHADKN
Sbjct: 61  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCC 221
           SKKSL A ++ D   N +L KGT I++P + +   R GCC
Sbjct: 181 SKKSLTADDD-DADGNSSLLKGTRIIIPSEQESGKRGGCC 219

[Close]

BLAST of Csa4G152280 vs. TAIR10
Match: AT5G47960.1 (AT5G47960.1 RAB GTPase homolog A4C)

HSP 1 Score: 354.0 bits (907), Expect = 6.9e-98
Identity = 175/223 (78.48%), Postives = 198/223 (88.79%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID
Sbjct: 1   MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           +KT+KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGHADKN
Sbjct: 61  RKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNK DLG+LRAVPTEDA+EFA+RENLFFMETSAL+S NVE +F T+LTEIYRI+
Sbjct: 121 IVIMLIGNKTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIV 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 224
           SKK+L A EE + G + +L +GT IVV G++ +S  KGCC  S
Sbjct: 181 SKKNLVANEEGESGGDSSLLQGTKIVVAGEETESKGKGCCGTS 223

[Close]

BLAST of Csa4G152280 vs. TAIR10
Match: AT5G65270.1 (AT5G65270.1 RAB GTPase homolog A4A)

HSP 1 Score: 310.1 bits (793), Expect = 1.1e-84
Identity = 159/219 (72.60%), Postives = 184/219 (84.02%), Query Frame = 1


Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
           YGD +QKIDYVFKVVLIGDSAVGK+Q+LAR++R+EFS+DSKATIGVEFQT+TLVID K+V
Sbjct: 7   YGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSV 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+T+RQ+FDH+ RWLEELR HADKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKS 184
           LIGNK DL   RA+PTEDA+EFAE+E LFF+ETSA  +TNVE+AF T+LTEI+ I++KKS
Sbjct: 127 LIGNKSDLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKS 186

Query: 185 LAAGEEIDIGSNPALFKGTSI-VVPGQDQDSGRKG--CC 221
           LAA E+ + G NP    G  I +VPG  Q    K   CC
Sbjct: 187 LAASEDQENG-NPGSLAGKKIDIVPGPGQVIPNKSNMCC 224

[Close]

BLAST of Csa4G152280 vs. TAIR10
Match: AT4G39990.1 (AT4G39990.1 RAB GTPase homolog A4B)

HSP 1 Score: 300.8 bits (769), Expect = 6.9e-82
Identity = 151/221 (68.33%), Postives = 182/221 (82.35%), Query Frame = 1


Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
           YG  + K+DYVFKVVLIGDSAVGK+QLLARF+R+EFS+DSKATIGVEFQT+TL I+QK++
Sbjct: 7   YGGASGKVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSI 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR++F+H+ RWLEELR HADKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKS 184
           LIGNK DL   RAVPTEDA+EFAE+E LFF+ETSAL +TNVE +F T++T+IY  ++KK+
Sbjct: 127 LIGNKSDLEDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKN 186

Query: 185 LAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRK--GCCFAS 224
           LA+  +    +NP    G  I++PG  Q+   K   CC +S
Sbjct: 187 LASEGD---SNNPGSLAGKKILIPGSGQEIPAKTSTCCTSS 224

[Close]

BLAST of Csa4G152280 vs. TAIR10
Match: AT1G09630.1 (AT1G09630.1 RAB GTPase 11C)

HSP 1 Score: 267.3 bits (682), Expect = 8.4e-72
Identity = 133/215 (61.86%), Postives = 173/215 (80.47%), Query Frame = 1


Query: 9   NQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQI 68
           +++ DY+FKVVLIGDS VGK+ LL+RF+RNEF ++SK+TIGVEF T+TL ++ +TVKAQI
Sbjct: 6   DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQI 65

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGN 128
           WDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  +F++++RWL+ELR HAD NIVIMLIGN
Sbjct: 66  WDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGN 125

Query: 129 KCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAG 188
           K DL  LRAV TEDAQ +AE+E L F+ETSALE+ NVE AF TIL+E+YRIISKKS+++ 
Sbjct: 126 KTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSD 185

Query: 189 EEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 224
           +     +N  + +G +I V    + + +K CC +S
Sbjct: 186 QTT---ANANIKEGQTIDVAATSESNAKKPCCSSS 217

[Close]

BLAST of Csa4G152280 vs. NCBI nr
Match: gi|449464898|ref|XP_004150166.1| (PREDICTED: ras-related protein RABA4d [Cucumis sativus])

HSP 1 Score: 441.4 bits (1134), Expect = 9.3e-121
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 224
           SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 223

[Close]

BLAST of Csa4G152280 vs. NCBI nr
Match: gi|659121765|ref|XP_008460801.1| (PREDICTED: ras-related protein RABA4d [Cucumis melo])

HSP 1 Score: 438.0 bits (1125), Expect = 1.0e-119
Identity = 221/223 (99.10%), Postives = 222/223 (99.55%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 224
           SKKSLAAGEEIDIGSNPALFKGT+IVVPGQDQDSG KGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTNIVVPGQDQDSGTKGCCFAS 223

[Close]

BLAST of Csa4G152280 vs. NCBI nr
Match: gi|1009106149|ref|XP_015872112.1| (PREDICTED: ras-related protein RABA4d [Ziziphus jujuba])

HSP 1 Score: 392.5 bits (1007), Expect = 4.9e-106
Identity = 200/222 (90.09%), Postives = 208/222 (93.69%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            K VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  SKIVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDS-GRKGCCF 222
           SKK+L A ++ID  +   L KGT I+VPGQ+QDS G KGCCF
Sbjct: 181 SKKTLTASDDID-SNGSGLLKGTKIIVPGQEQDSGGGKGCCF 221

[Close]

BLAST of Csa4G152280 vs. NCBI nr
Match: gi|567857618|ref|XP_006421492.1| (hypothetical protein CICLE_v10005824mg [Citrus clementina])

HSP 1 Score: 391.7 bits (1005), Expect = 8.4e-106
Identity = 196/224 (87.50%), Postives = 209/224 (93.30%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGK+QLLARF+RNEFSVDSKATIGVEFQTKTL ID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHADKN
Sbjct: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF T+LTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDS-GRKGCCFAS 224
           SKKSL A +E D+  N  L KGT I+VPGQDQ+S  ++GCC +S
Sbjct: 181 SKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLSS 224

[Close]

BLAST of Csa4G152280 vs. NCBI nr
Match: gi|590636715|ref|XP_007028923.1| (RAB GTPase A4D [Theobroma cacao])

HSP 1 Score: 385.6 bits (989), Expect = 6.0e-104
Identity = 193/220 (87.73%), Postives = 203/220 (92.27%), Query Frame = 1


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSN YGDYNQKIDYVFKVVLIGDSAVGK+QLLARF+RNEFSVDSKATIGVEFQTKTL ID
Sbjct: 1   MSNFYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLAID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALESTNVETAF T+LTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALESTNVETAFLTVLTEIYRII 180

Query: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCC 221
           SKK+LAA +E+D   N  L KGT I+VP Q+  + RKG C
Sbjct: 181 SKKTLAANDELDPNGNSGLLKGTRIIVPNQELQTERKGGC 220

The following BLAST results are available for this feature:

BLAST of Csa4G152280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAA4D_ARATH	3.2e-105	87.27	Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1	[more]
RAA4C_ARATH	1.2e-96	78.48	Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1	[more]
RLGP1_ORYSJ	1.6e-96	80.82	Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2	[more]
RB11A_LOTJA	2.7e-88	75.57	Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1	[more]
RB11C_TOBAC	1.9e-86	73.30	Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1	[more]

BLAST of Csa4G152280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW90_CUCSA	6.4e-121	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152280 PE=4 SV=1	[more]
V4S363_9ROSI	5.9e-106	87.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005824mg PE=4 SV=1	[more]
A0A067F1B3_CITSI	5.9e-106	87.50	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027382mg PE=4 SV=1	[more]
A0A061EWF7_THECC	4.2e-104	87.73	RAB GTPase A4D OS=Theobroma cacao GN=TCM_024843 PE=4 SV=1	[more]
A0A0D2NSL7_GOSRA	9.4e-104	86.88	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G140300 PE=4 SV=1	[more]

BLAST of Csa4G152280 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12160.1	1.8e-106	87.27	RAB GTPase homolog A4D	[more]
AT5G47960.1	6.9e-98	78.48	RAB GTPase homolog A4C	[more]
AT5G65270.1	1.1e-84	72.60	RAB GTPase homolog A4A	[more]
AT4G39990.1	6.9e-82	68.33	RAB GTPase homolog A4B	[more]
AT1G09630.1	8.4e-72	61.86	RAB GTPase 11C	[more]

BLAST of Csa4G152280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464898\|ref\|XP_004150166.1\|	9.3e-121	100.00	PREDICTED: ras-related protein RABA4d [Cucumis sativus]	[more]
gi\|659121765\|ref\|XP_008460801.1\|	1.0e-119	99.10	PREDICTED: ras-related protein RABA4d [Cucumis melo]	[more]
gi\|1009106149\|ref\|XP_015872112.1\|	4.9e-106	90.09	PREDICTED: ras-related protein RABA4d [Ziziphus jujuba]	[more]
gi\|567857618\|ref\|XP_006421492.1\|	8.4e-106	87.50	hypothetical protein CICLE_v10005824mg [Citrus clementina]	[more]
gi\|590636715\|ref\|XP_007028923.1\|	6.0e-104	87.73	RAB GTPase A4D [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0009827	plant-type cell wall modification
biological_process	GO:0080092	regulation of pollen tube growth
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0045177	apical part of cell
cellular_component	GO:0070382	exocytic vesicle
cellular_component	GO:0016020	membrane
cellular_component	GO:0090404	pollen tube tip
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0019900	kinase binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU105371	cucumber EST collection version 3.0	transcribed_cluster
CU157292	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G152280.1	Csa4G152280.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU105371	CU105371	transcribed_cluster
CU157292	CU157292	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 17..177 score: 2.1
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 15..171 score: 2.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 9..201 score: 2.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..182 score: 1.16
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 154..176 score: 8.2E-42coord: 16..37 score: 8.2E-42coord: 39..55 score: 8.2E-42coord: 119..132 score: 8.2E-42coord: 57..79 score: 8.2
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 8..222 score: 5.6E
None	No IPR available	PANTHER	PTHR24073:SF578	RAS-RELATED PROTEIN RABA4D	coord: 8..222 score: 5.6E
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 13..179 score: 3.5
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 18..175 score: 2.6
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 16..179 score: 1.7E
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 21..215 score: 5.
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..181 score: 0.
None	No IPR available	PROFILE	PS51419	RAB	coord: 11..220 score: 35

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G152280	MELO3C023181	Melon (DHL92) v3.5.1	cumeB331
Csa4G152280	ClCG04G000360	Watermelon (Charleston Gray)	cuwcgB305
Csa4G152280	Lsi01G018930	Bottle gourd (USVL1VR-Ls)	culsiB260
Csa4G152280	MELO3C023181.2	Melon (DHL92) v3.6.1	cumedB313
Csa4G152280	Cla97C04G068730	Watermelon (97103) v2	cuwmbB302
Csa4G152280	Bhi03G002125	Wax gourd	cuwgoB392
Csa4G152280	CSPI04G10370	Wild cucumber (PI 183967)	cpicuB182
Csa4G152280	Cucsa.038030	Cucumber (Gy14) v1	cgycuB011
Csa4G152280	CmaCh03G000800	Cucurbita maxima (Rimu)	cmacuB673
Csa4G152280	CmoCh03G000810	Cucurbita moschata (Rifu)	cmocuB662
Csa4G152280	Cp4.1LG10g11790	Cucurbita pepo (Zucchini)	cpecuB074
Csa4G152280	CsGy4G010060	Cucumber (Gy14) v2	cgybcuB165
Csa4G152280	Carg22467	Silver-seed gourd	carcuB0214

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None