Cucsa.038030 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.038030
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRas-related protein RABA4d
Locationscaffold00493 : 81983 .. 83189 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGGGGAGTGAGAAAGGCATAATTTGAGTGAAGGGAAAGGGAAGAGTTGTGGGAAAGCTGAGGGAAGCTGAAGAAAAGTTTTTGTTTtGCATGAAGAAACTGAGGTAAAATTATGATCCATTTATCAACTTTTTTCTGGCTTTGATGCATATAATCCCTTAAGTCAGATTTGAGAACGACAAGTGATGATAtCTTGAATCCAATCAATAATCTGTATTCATTACTTTTTTGTATTTCTTCACAATAGATGTAACATTGATGAAATTTTTGCATTATCTCTCAAACAAAATATTGTATGTTTTAAGTATATCTACTCTTAAATTCATAATTAAACAGCCTCGTTGTTGTATAGTTGTCTGGCATGAGACAAGTTTGACTTTTAGAATGCTAGGAGCCCATGCCCTGTGGTATCAACAAGTTAGGATTTGTATTATATTGTAATATTTTCCATTTGGTTGCTGATATCAAAACCAACTTGTGAGTTGCTGATATCGAAACCAATTTATGAGTTTTTGATATCAAAATTGAGTTATAAGTATTATGTTTTCCGTACGTCATTTGGTGTTTGTGTCTGCTATTACGCTAAAAAAGTTCCCATTTTGACTTGATCAGGTTCTTGTTTGAATTGTTATTGGATCCAACATCGTTATCTGATAAAACAGCACACGTAAATTTGACATTTTTATGTACTTGCTTTGTGAATATTGCTGTTAAGTTGACTATAGTTTCTAAAAATATGCCCTTTTCCGCATTGCCAGGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTAGTTTATGATATGACGAAGCGCCAGTCGTTCGACCACATGGCAAGGTGGCTGGAGGAACTTAGAGGGCACGCTGATAAGAACATCGTTATAATGCTCATTGGAAACAAGTGCGATTTAGGAAGTCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCTGAAAGAGAAAACCTGTTCTTCATGGAGACATCGGCTCTGGAGTCCACAAATGTcGAAACTGCATTCTTCACAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAAAGTCTTGCAGCTGGGGAAGAGATAGATATTGGTTCGAATCCAGCCCTGTTTAAAGGGACTAGTATAGTTGTTCCTGGACAAGACCAGGATTCTGGGAGAAAAGGTTGTTGCTTCGCGTCATGA

mRNA sequence

ATGTATGGGGAGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTAGTTTATGATATGACGAAGCGCCAGTCGTTCGACCACATGGCAAGGTGGCTGGAGGAACTTAGAGGGCACGCTGATAAGAACATCGTTATAATGCTCATTGGAAACAAGTGCGATTTAGGAAGTCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCTGAAAGAGAAAACCTGTTCTTCATGGAGACATCGGCTCTGGAGTCCACAAATGTCGAAACTGCATTCTTCACAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAAAGTCTTGCAGCTGGGGAAGAGATAGATATTGGTTCGAATCCAGCCCTGTTTAAAGGGACTAGTATAGTTGTTCCTGGACAAGACCAGGATTCTGGGAGAAAAGGTTGTTGCTTCGCGTCATGA

Coding sequence (CDS)

ATGTATGGGGAGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTAGTTTATGATATGACGAAGCGCCAGTCGTTCGACCACATGGCAAGGTGGCTGGAGGAACTTAGAGGGCACGCTGATAAGAACATCGTTATAATGCTCATTGGAAACAAGTGCGATTTAGGAAGTCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCTGAAAGAGAAAACCTGTTCTTCATGGAGACATCGGCTCTGGAGTCCACAAATGTcGAAACTGCATTCTTCACAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAAAGTCTTGCAGCTGGGGAAGAGATAGATATTGGTTCGAATCCAGCCCTGTTTAAAGGGACTAGTATAGTTGTTCCTGGACAAGACCAGGATTCTGGGAGAAAAGGTTGTTGCTTCGCGTCATGA

Protein sequence

MYGEYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS*
Homology
[Close]
BLAST of Cucsa.038030 vs. Swiss-Prot
Match: RAA4D_ARATH (Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.1e-62
Identity = 118/144 (81.94%), Postives = 128/144 (88.89%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WLEELRGHADKNIVIMLIGNKCDLGSLR
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIMLIGNKCDLGSLR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRIISKKSL A ++ D   N
Sbjct: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKSLTADDD-DADGN 196

Query: 125 PALFKGTSIVVPGQDQDSGRKGCC 149
            +L KGT I++P + +   R GCC
Sbjct: 197 SSLLKGTRIIIPSEQESGKRGGCC 219

[Close]
BLAST of Cucsa.038030 vs. Swiss-Prot
Match: RLGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 233.0 bits (593), Expect = 2.1e-60
Identity = 116/147 (78.91%), Postives = 126/147 (85.71%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGHADKNIVIMLIGNK DLG+LR
Sbjct: 80  YRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLR 139

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
            VPTEDA+EFAERENLFFMETSALESTNVE AF T+LTEIYRI+SKK+L A EE+D   N
Sbjct: 140 VVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGN 199

Query: 125 PALFKGTSIVVPGQDQDSGRKGCCFAS 152
            +L KGT IVVPGQ+     K  C  S
Sbjct: 200 SSLLKGTKIVVPGQEPAPPTKASCCMS 226

[Close]
BLAST of Cucsa.038030 vs. Swiss-Prot
Match: RAA4C_ARATH (Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.2e-59
Identity = 112/147 (76.19%), Postives = 129/147 (87.76%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGHADKNIVIMLIGNK DLG+LR
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKTDLGTLR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDA+EFA+RENLFFMETSAL+S NVE +F T+LTEIYRI+SKK+L A EE + G +
Sbjct: 137 AVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKKNLVANEEGESGGD 196

Query: 125 PALFKGTSIVVPGQDQDSGRKGCCFAS 152
            +L +GT IVV G++ +S  KGCC  S
Sbjct: 197 SSLLQGTKIVVAGEETESKGKGCCGTS 223

[Close]
BLAST of Cucsa.038030 vs. Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 8.9e-51
Identity = 104/149 (69.80%), Postives = 121/149 (81.21%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWLEELR HADKNIVI+LIGNKCDL + R
Sbjct: 79  YRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQR 138

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
            VPTEDA+EFAE+E LFF+ETSALE+TNVE+AF T+LTEIY I++KKSLAA E    G N
Sbjct: 139 DVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGNG-N 198

Query: 125 PALFKGTSIVVPGQDQD--SGRKGCCFAS 152
            A   G  I++PG  Q+  + R  CC AS
Sbjct: 199 SASLSGQKIIIPGPAQEIPAKRNMCCQAS 226

[Close]
BLAST of Cucsa.038030 vs. Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 8.4e-49
Identity = 98/145 (67.59%), Postives = 117/145 (80.69%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWLEELR HAD+NIVIML GNK DL   R
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDA+EFA++E LFF+ETSA+E+T +E AF T+LTEI+ I++KK+LAA +E    SN
Sbjct: 137 AVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAA-DENQSNSN 196

Query: 125 PALFKGTSIVVPGQDQ-DSGRKGCC 149
           PA   G  I+VPG  Q   G+K CC
Sbjct: 197 PASLTGKKILVPGPGQVIPGKKACC 220

[Close]
BLAST of Cucsa.038030 vs. TrEMBL
Match: A0A0A0KW90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152280 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.6e-77
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN
Sbjct: 137 AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 196

Query: 125 PALFKGTSIVVPGQDQDSGRKGCCFAS 152
           PALFKGTSIVVPGQDQDSGRKGCCFAS
Sbjct: 197 PALFKGTSIVVPGQDQDSGRKGCCFAS 223

[Close]
BLAST of Cucsa.038030 vs. TrEMBL
Match: V4S363_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005824mg PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.4e-64
Identity = 124/148 (83.78%), Postives = 135/148 (91.22%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHADKNIVIMLIGNKCDLGSLR
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDAQEFA+RENLFFMETSALE+TNVETAF T+LTEIYRIISKKSL A +E D+  N
Sbjct: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGN 196

Query: 125 PALFKGTSIVVPGQDQDS-GRKGCCFAS 152
             L KGT I+VPGQDQ+S  ++GCC +S
Sbjct: 197 SNLLKGTRIIVPGQDQNSASKRGCCLSS 224

[Close]
BLAST of Cucsa.038030 vs. TrEMBL
Match: A0A067F1B3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027382mg PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.4e-64
Identity = 124/148 (83.78%), Postives = 135/148 (91.22%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHADKNIVIMLIGNKCDLGSLR
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDAQEFA+RENLFFMETSALE+TNVETAF T+LTEIYRIISKKSL A +E D+  N
Sbjct: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGN 196

Query: 125 PALFKGTSIVVPGQDQDS-GRKGCCFAS 152
             L KGT I+VPGQDQ+S  ++GCC +S
Sbjct: 197 SNLLKGTRIIVPGQDQNSASKRGCCLSS 224

[Close]
BLAST of Cucsa.038030 vs. TrEMBL
Match: A0A061EWF7_THECC (RAB GTPase A4D OS=Theobroma cacao GN=TCM_024843 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.7e-62
Identity = 122/144 (84.72%), Postives = 130/144 (90.28%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDAQEFA+RENLFFMETSALESTNVETAF T+LTEIYRIISKK+LAA +E+D   N
Sbjct: 137 AVPTEDAQEFAQRENLFFMETSALESTNVETAFLTVLTEIYRIISKKTLAANDELDPNGN 196

Query: 125 PALFKGTSIVVPGQDQDSGRKGCC 149
             L KGT I+VP Q+  + RKG C
Sbjct: 197 SGLLKGTRIIVPNQELQTERKGGC 220

[Close]
BLAST of Cucsa.038030 vs. TrEMBL
Match: B9T2D5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0405720 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.7e-62
Identity = 122/148 (82.43%), Postives = 130/148 (87.84%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR
Sbjct: 76  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 135

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVP EDAQEFA+RENLFFMETSALESTNVETAF T+LTEIYR+ISKK+L A EE+D    
Sbjct: 136 AVPIEDAQEFAQRENLFFMETSALESTNVETAFLTVLTEIYRVISKKTLTANEELDTNGT 195

Query: 125 PALFKGTSIVVPGQDQDSGRK-GCCFAS 152
             L KGT I+VPG DQ   +K GCC +S
Sbjct: 196 SGLLKGTRIIVPGHDQAPAKKGGCCMSS 223

[Close]
BLAST of Cucsa.038030 vs. TAIR10
Match: AT3G12160.1 (AT3G12160.1 RAB GTPase homolog A4D)

HSP 1 Score: 238.4 bits (607), Expect = 2.8e-63
Identity = 118/144 (81.94%), Postives = 128/144 (88.89%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WLEELRGHADKNIVIMLIGNKCDLGSLR
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIMLIGNKCDLGSLR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRIISKKSL A ++ D   N
Sbjct: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKSLTADDD-DADGN 196

Query: 125 PALFKGTSIVVPGQDQDSGRKGCC 149
            +L KGT I++P + +   R GCC
Sbjct: 197 SSLLKGTRIIIPSEQESGKRGGCC 219

[Close]
BLAST of Cucsa.038030 vs. TAIR10
Match: AT5G47960.1 (AT5G47960.1 RAB GTPase homolog A4C)

HSP 1 Score: 228.4 bits (581), Expect = 2.9e-60
Identity = 112/147 (76.19%), Postives = 129/147 (87.76%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGHADKNIVIMLIGNK DLG+LR
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKTDLGTLR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDA+EFA+RENLFFMETSAL+S NVE +F T+LTEIYRI+SKK+L A EE + G +
Sbjct: 137 AVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKKNLVANEEGESGGD 196

Query: 125 PALFKGTSIVVPGQDQDSGRKGCCFAS 152
            +L +GT IVV G++ +S  KGCC  S
Sbjct: 197 SSLLQGTKIVVAGEETESKGKGCCGTS 223

[Close]
BLAST of Cucsa.038030 vs. TAIR10
Match: AT5G65270.1 (AT5G65270.1 RAB GTPase homolog A4A)

HSP 1 Score: 188.3 bits (477), Expect = 3.4e-48
Identity = 98/147 (66.67%), Postives = 116/147 (78.91%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYD+T+RQ+FDH+ RWLEELR HADKNIVI+LIGNK DL   R
Sbjct: 79  YRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVIILIGNKSDLVDQR 138

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           A+PTEDA+EFAE+E LFF+ETSA  +TNVE+AF T+LTEI+ I++KKSLAA E+ + G N
Sbjct: 139 AIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKSLAASEDQENG-N 198

Query: 125 PALFKGTSI-VVPGQDQDSGRKG--CC 149
           P    G  I +VPG  Q    K   CC
Sbjct: 199 PGSLAGKKIDIVPGPGQVIPNKSNMCC 224

[Close]
BLAST of Cucsa.038030 vs. TAIR10
Match: AT4G39990.1 (AT4G39990.1 RAB GTPase homolog A4B)

HSP 1 Score: 184.9 bits (468), Expect = 3.7e-47
Identity = 93/149 (62.42%), Postives = 116/149 (77.85%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKR++F+H+ RWLEELR HADKNIVI+LIGNK DL   R
Sbjct: 79  YRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVIILIGNKSDLEDQR 138

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDA+EFAE+E LFF+ETSAL +TNVE +F T++T+IY  ++KK+LA+  +    +N
Sbjct: 139 AVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKNLASEGD---SNN 198

Query: 125 PALFKGTSIVVPGQDQDSGRK--GCCFAS 152
           P    G  I++PG  Q+   K   CC +S
Sbjct: 199 PGSLAGKKILIPGSGQEIPAKTSTCCTSS 224

[Close]
BLAST of Cucsa.038030 vs. TAIR10
Match: AT1G28550.1 (AT1G28550.1 RAB GTPase homolog A1I)

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-43
Identity = 89/148 (60.14%), Postives = 112/148 (75.68%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRA+TSAYYRGAVGA+LVYD+T+  +F+++ RWL+ELR H D NIVIML+GNK DL  LR
Sbjct: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLR 134

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           A+ TE+A+ FAEREN FFMETSALE+ NV+ AF  +LT+IYR++SKK+L AG++      
Sbjct: 135 AISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSKKALEAGDD----PT 194

Query: 125 PALFKGTSIVVPGQDQDSGRK--GCCFA 151
            AL KG  I V G+D  S  K  GCC A
Sbjct: 195 TALPKGQMINVGGRDDISAVKKPGCCSA 218

[Close]
BLAST of Cucsa.038030 vs. NCBI nr
Match: gi|449464898|ref|XP_004150166.1| (PREDICTED: ras-related protein RABA4d [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-76
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN
Sbjct: 137 AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 196

Query: 125 PALFKGTSIVVPGQDQDSGRKGCCFAS 152
           PALFKGTSIVVPGQDQDSGRKGCCFAS
Sbjct: 197 PALFKGTSIVVPGQDQDSGRKGCCFAS 223

[Close]
BLAST of Cucsa.038030 vs. NCBI nr
Match: gi|659121765|ref|XP_008460801.1| (PREDICTED: ras-related protein RABA4d [Cucumis melo])

HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN
Sbjct: 137 AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 196

Query: 125 PALFKGTSIVVPGQDQDSGRKGCCFAS 152
           PALFKGT+IVVPGQDQDSG KGCCFAS
Sbjct: 197 PALFKGTNIVVPGQDQDSGTKGCCFAS 223

[Close]
BLAST of Cucsa.038030 vs. NCBI nr
Match: gi|567857618|ref|XP_006421492.1| (hypothetical protein CICLE_v10005824mg [Citrus clementina])

HSP 1 Score: 251.5 bits (641), Expect = 9.2e-64
Identity = 124/148 (83.78%), Postives = 135/148 (91.22%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL+ELRGHADKNIVIMLIGNKCDLGSLR
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDAQEFA+RENLFFMETSALE+TNVETAF T+LTEIYRIISKKSL A +E D+  N
Sbjct: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGN 196

Query: 125 PALFKGTSIVVPGQDQDS-GRKGCCFAS 152
             L KGT I+VPGQDQ+S  ++GCC +S
Sbjct: 197 SNLLKGTRIIVPGQDQNSASKRGCCLSS 224

[Close]
BLAST of Cucsa.038030 vs. NCBI nr
Match: gi|1009106149|ref|XP_015872112.1| (PREDICTED: ras-related protein RABA4d [Ziziphus jujuba])

HSP 1 Score: 249.6 bits (636), Expect = 3.5e-63
Identity = 126/146 (86.30%), Postives = 134/146 (91.78%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR
Sbjct: 77  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 136

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRIISKK+L A ++ID  + 
Sbjct: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKTLTASDDID-SNG 196

Query: 125 PALFKGTSIVVPGQDQDS-GRKGCCF 150
             L KGT I+VPGQ+QDS G KGCCF
Sbjct: 197 SGLLKGTKIIVPGQEQDSGGGKGCCF 221

[Close]
BLAST of Cucsa.038030 vs. NCBI nr
Match: gi|1009106042|ref|XP_015866809.1| (PREDICTED: ras-related protein RABA4d-like [Ziziphus jujuba])

HSP 1 Score: 249.6 bits (636), Expect = 3.5e-63
Identity = 126/146 (86.30%), Postives = 134/146 (91.78%), Query Frame = 1 

Query: 5   YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 64
           YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR
Sbjct: 14  YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLR 73

Query: 65  AVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSN 124
           AVPTEDAQEFA+RENLFFMETSALE+TNVETAF TILTEIYRIISKK+L A ++ID  + 
Sbjct: 74  AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKTLTASDDID-SNG 133

Query: 125 PALFKGTSIVVPGQDQDS-GRKGCCF 150
             L KGT I+VPGQ+QDS G KGCCF
Sbjct: 134 SGLLKGTKIIVPGQEQDSGGGKGCCF 158

The following BLAST results are available for this feature:
BLAST of Cucsa.038030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RAA4D_ARATH5.1e-6281.94Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1[more]
RLGP1_ORYSJ2.1e-6078.91Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2[more]
RAA4C_ARATH5.2e-5976.19Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1[more]
RB11A_LOTJA8.9e-5169.80Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1[more]
RB11C_TOBAC8.4e-4967.59Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1[more]
BLAST of Cucsa.038030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW90_CUCSA8.6e-77100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152280 PE=4 SV=1[more]
V4S363_9ROSI6.4e-6483.78Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005824mg PE=4 SV=1[more]
A0A067F1B3_CITSI6.4e-6483.78Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027382mg PE=4 SV=1[more]
A0A061EWF7_THECC2.7e-6284.72RAB GTPase A4D OS=Theobroma cacao GN=TCM_024843 PE=4 SV=1[more]
B9T2D5_RICCO2.7e-6282.43Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0405720 PE=4 SV=1[more]
BLAST of Cucsa.038030 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G12160.12.8e-6381.94 RAB GTPase homolog A4D[more]
AT5G47960.12.9e-6076.19 RAB GTPase homolog A4C[more]
AT5G65270.13.4e-4866.67 RAB GTPase homolog A4A[more]
AT4G39990.13.7e-4762.42 RAB GTPase homolog A4B[more]
AT1G28550.11.9e-4360.14 RAB GTPase homolog A1I[more]
BLAST of Cucsa.038030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464898|ref|XP_004150166.1|1.2e-76100.00PREDICTED: ras-related protein RABA4d [Cucumis sativus][more]
gi|659121765|ref|XP_008460801.1|1.4e-7598.64PREDICTED: ras-related protein RABA4d [Cucumis melo][more]
gi|567857618|ref|XP_006421492.1|9.2e-6483.78hypothetical protein CICLE_v10005824mg [Citrus clementina][more]
gi|1009106149|ref|XP_015872112.1|3.5e-6386.30PREDICTED: ras-related protein RABA4d [Ziziphus jujuba][more]
gi|1009106042|ref|XP_015866809.1|3.5e-6386.30PREDICTED: ras-related protein RABA4d-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0008152 metabolic process
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0009827 plant-type cell wall modification
biological_process GO:0080092 regulation of pollen tube growth
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0045177 apical part of cell
cellular_component GO:0070382 exocytic vesicle
cellular_component GO:0016020 membrane
cellular_component GO:0090404 pollen tube tip
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0019900 kinase binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.038030.1Cucsa.038030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 4..105
score: 3.5
IPR005225Small GTP-binding protein domainTIGRFAMsTIGR00231TIGR00231coord: 4..99
score: 2.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 4..116
score: 8.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..110
score: 5.3
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 47..60
score: 2.3E-12coord: 82..104
score: 2.3
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 5..150
score: 2.4E
NoneNo IPR availablePANTHERPTHR24073:SF578RAS-RELATED PROTEIN RABA4Dcoord: 5..150
score: 2.4E
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 4..107
score: 5.
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 1..107
score: 1.9
NoneNo IPR availablePROFILEPS51419RABcoord: 1..148
score: 21

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.038030Csa4G152280Cucumber (Chinese Long) v2cgycuB011
Cucsa.038030MELO3C023181Melon (DHL92) v3.5.1cgymeB011
Cucsa.038030ClCG04G000360Watermelon (Charleston Gray)cgywcgB013
Cucsa.038030CSPI04G10370Wild cucumber (PI 183967)cgycpiB011
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.038030Melon (DHL92) v3.6.1cgymedB013
Cucsa.038030Cucumber (Chinese Long) v3cgycucB014
Cucsa.038030Watermelon (97103) v2cgywmbB013
Cucsa.038030Wax gourdcgywgoB013
Cucsa.038030Bottle gourd (USVL1VR-Ls)cgylsiB012