Cucsa.038020 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.038020
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRas-related protein RABA4d
Locationscaffold00493 : 79216 .. 79442 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAATCTATATGGGGATTATAATCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCTGTCGGCAAAACCCAGCTCCTTGCTCGATTTTCTCGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTCATTGATCAAAAAACAGTGAAAGCCCAGATATGGGATACTGCAGGACAAGAAAG

mRNA sequence

ATGTCGAATCTATATGGGGATTATAATCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCTGTCGGCAAAACCCAGCTCCTTGCTCGATTTTCTCGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTCATTGATCAAAAAACAGTGAAAGCCCAGATATGGGATACTGCAGGACAAGAAAG

Coding sequence (CDS)

ATGTCGAATCTATATGGGGATTATAATCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCTGTCGGCAAAACCCAGCTCCTTGCTCGATTTTCTCGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTCATTGATCAAAAAACAGTGAAAGCCCAGATATGGGATACTGCAGGACAAGAAAG

Protein sequence

MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQEX
Homology
[Close]
BLAST of Cucsa.038020 vs. Swiss-Prot
Match: RAA4D_ARATH (Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-34
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
           KTVKAQIWDTAGQE
Sbjct: 61 NKTVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. Swiss-Prot
Match: RAA4C_ARATH (Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-29
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID
Sbjct: 1  MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61 QKTVKAQIWDTAGQE 76
          +KT+KAQIWDTAGQE
Sbjct: 61 RKTIKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-29
Identity = 63/75 (84.00%), Postives = 71/75 (94.67%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          M++ YGD +QKIDYVFKVVLIGDSAVGKTQ+LARF+RNEFS+DSKATIGVEFQT+TLVI 
Sbjct: 1  MASGYGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQ 60

Query: 61 QKTVKAQIWDTAGQE 76
           K+VKAQIWDTAGQE
Sbjct: 61 HKSVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.8e-29
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 1 

Query: 5  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
          YGD N KIDYVFKVVLIGDSAVGK+Q+LARF+RNEFS+DSK+TIGVEFQT+TLVID KTV
Sbjct: 7  YGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTV 66

Query: 65 KAQIWDTAGQE 76
          KAQIWDTAGQE
Sbjct: 67 KAQIWDTAGQE 77

[Close]
BLAST of Cucsa.038020 vs. Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.1e-28
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          M++ YGD +QKIDYVFKVVLIGDSAVGK+Q+LARF+RNEFS+DSKATIGVEFQT+TL I 
Sbjct: 1  MASGYGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQ 60

Query: 61 QKTVKAQIWDTAGQE 76
           K+VKAQIWDTAGQE
Sbjct: 61 HKSVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. TrEMBL
Match: A0A0A0KW90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152280 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
          QKTVKAQIWDTAGQE
Sbjct: 61 QKTVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. TrEMBL
Match: A0A078CFN9_BRANA (BnaA03g32140D protein OS=Brassica napus GN=BnaA03g32140D PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
           KTVKAQIWDTAGQE
Sbjct: 61 NKTVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. TrEMBL
Match: D7KZQ3_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_672041 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
           KTVKAQIWDTAGQE
Sbjct: 61 NKTVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. TrEMBL
Match: A0A087H8X8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G132100 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
           KTVKAQIWDTAGQE
Sbjct: 61 NKTVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. TrEMBL
Match: A0A0D3BAW7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
           KTVKAQIWDTAGQE
Sbjct: 61 NKTVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. TAIR10
Match: AT3G12160.1 (AT3G12160.1 RAB GTPase homolog A4D)

HSP 1 Score: 146.7 bits (369), Expect = 5.6e-36
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
           KTVKAQIWDTAGQE
Sbjct: 61 NKTVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. TAIR10
Match: AT5G47960.1 (AT5G47960.1 RAB GTPase homolog A4C)

HSP 1 Score: 128.3 bits (321), Expect = 2.1e-30
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID
Sbjct: 1  MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61 QKTVKAQIWDTAGQE 76
          +KT+KAQIWDTAGQE
Sbjct: 61 RKTIKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. TAIR10
Match: AT5G65270.1 (AT5G65270.1 RAB GTPase homolog A4A)

HSP 1 Score: 124.4 bits (311), Expect = 3.0e-29
Identity = 60/71 (84.51%), Postives = 69/71 (97.18%), Query Frame = 1 

Query: 5  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
          YGD +QKIDYVFKVVLIGDSAVGK+Q+LAR++R+EFS+DSKATIGVEFQT+TLVID K+V
Sbjct: 7  YGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSV 66

Query: 65 KAQIWDTAGQE 76
          KAQIWDTAGQE
Sbjct: 67 KAQIWDTAGQE 77

[Close]
BLAST of Cucsa.038020 vs. TAIR10
Match: AT4G39990.1 (AT4G39990.1 RAB GTPase homolog A4B)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-27
Identity = 57/71 (80.28%), Postives = 67/71 (94.37%), Query Frame = 1 

Query: 5  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
          YG  + K+DYVFKVVLIGDSAVGK+QLLARF+R+EFS+DSKATIGVEFQT+TL I+QK++
Sbjct: 7  YGGASGKVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSI 66

Query: 65 KAQIWDTAGQE 76
          KAQIWDTAGQE
Sbjct: 67 KAQIWDTAGQE 77

[Close]
BLAST of Cucsa.038020 vs. TAIR10
Match: AT1G01200.1 (AT1G01200.1 RAB GTPase homolog A3)

HSP 1 Score: 106.3 bits (264), Expect = 8.4e-24
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 10 QKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIW 69
          +KIDYVFKVV+IGDSAVGKTQLL+RF+ NEF  DSK+TIGVEFQT+T+ +  K VKAQIW
Sbjct: 23 EKIDYVFKVVVIGDSAVGKTQLLSRFTHNEFCYDSKSTIGVEFQTRTITLRGKLVKAQIW 82

Query: 70 DTAGQE 76
          DTAGQE
Sbjct: 83 DTAGQE 88

[Close]
BLAST of Cucsa.038020 vs. NCBI nr
Match: gi|449464898|ref|XP_004150166.1| (PREDICTED: ras-related protein RABA4d [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
          QKTVKAQIWDTAGQE
Sbjct: 61 QKTVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. NCBI nr
Match: gi|659121765|ref|XP_008460801.1| (PREDICTED: ras-related protein RABA4d [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
          QKTVKAQIWDTAGQE
Sbjct: 61 QKTVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. NCBI nr
Match: gi|657964219|ref|XP_008373738.1| (PREDICTED: ras-related protein RABA4d [Malus domestica])

HSP 1 Score: 147.9 bits (372), Expect = 7.2e-33
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLV+D
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVLD 60

Query: 61 QKTVKAQIWDTAGQE 76
          QKTVKAQIWDTAGQE
Sbjct: 61 QKTVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. NCBI nr
Match: gi|923671925|ref|XP_013650973.1| (PREDICTED: uncharacterized protein LOC106355602 [Brassica napus])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
           KTVKAQIWDTAGQE
Sbjct: 61 NKTVKAQIWDTAGQE 75

[Close]
BLAST of Cucsa.038020 vs. NCBI nr
Match: gi|15230422|ref|NP_187823.1| (RAB GTPase-like protein A4D [Arabidopsis thaliana])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1 

Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQE 76
           KTVKAQIWDTAGQE
Sbjct: 61 NKTVKAQIWDTAGQE 75

The following BLAST results are available for this feature:
BLAST of Cucsa.038020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RAA4D_ARATH1.0e-3497.33Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1[more]
RAA4C_ARATH3.7e-2982.67Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1[more]
RB11C_TOBAC3.7e-2984.00Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1[more]
RB11A_LOTJA4.8e-2987.32Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1[more]
RB11D_TOBAC3.1e-2881.33Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1[more]
BLAST of Cucsa.038020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW90_CUCSA1.3e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152280 PE=4 SV=1[more]
A0A078CFN9_BRANA1.1e-3297.33BnaA03g32140D protein OS=Brassica napus GN=BnaA03g32140D PE=4 SV=1[more]
D7KZQ3_ARALL1.1e-3297.33Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_672041 PE=4 ... [more]
A0A087H8X8_ARAAL1.1e-3297.33Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G132100 PE=4 SV=1[more]
A0A0D3BAW7_BRAOL1.1e-3297.33Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
BLAST of Cucsa.038020 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G12160.15.6e-3697.33 RAB GTPase homolog A4D[more]
AT5G47960.12.1e-3082.67 RAB GTPase homolog A4C[more]
AT5G65270.13.0e-2984.51 RAB GTPase homolog A4A[more]
AT4G39990.11.6e-2780.28 RAB GTPase homolog A4B[more]
AT1G01200.18.4e-2477.27 RAB GTPase homolog A3[more]
BLAST of Cucsa.038020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464898|ref|XP_004150166.1|1.9e-33100.00PREDICTED: ras-related protein RABA4d [Cucumis sativus][more]
gi|659121765|ref|XP_008460801.1|1.9e-33100.00PREDICTED: ras-related protein RABA4d [Cucumis melo][more]
gi|657964219|ref|XP_008373738.1|7.2e-3397.33PREDICTED: ras-related protein RABA4d [Malus domestica][more]
gi|923671925|ref|XP_013650973.1|1.6e-3297.33PREDICTED: uncharacterized protein LOC106355602 [Brassica napus][more]
gi|15230422|ref|NP_187823.1|1.6e-3297.33RAB GTPase-like protein A4D [Arabidopsis thaliana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0008152 metabolic process
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0009827 plant-type cell wall modification
biological_process GO:0080092 regulation of pollen tube growth
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0045177 apical part of cell
cellular_component GO:0070382 exocytic vesicle
cellular_component GO:0016020 membrane
cellular_component GO:0090404 pollen tube tip
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0019900 kinase binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.038020.1Cucsa.038020.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 17..75
score: 1.6
IPR005225Small GTP-binding protein domainTIGRFAMsTIGR00231TIGR00231coord: 15..75
score: 6.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 9..75
score: 7.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 11..75
score: 1.88
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 39..55
score: 1.3E-22coord: 57..76
score: 1.3E-22coord: 16..37
score: 1.3
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 8..75
score: 1.8
NoneNo IPR availablePANTHERPTHR24073:SF578RAS-RELATED PROTEIN RABA4Dcoord: 8..75
score: 1.8
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 16..76
score: 5.
NoneNo IPR availablePROFILEPS51419RABcoord: 11..76
score: 1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.038020Lsi01G018930Bottle gourd (USVL1VR-Ls)cgylsiB012
Cucsa.038020MELO3C023181.2Melon (DHL92) v3.6.1cgymedB013
Cucsa.038020CsaV3_4G010530Cucumber (Chinese Long) v3cgycucB014
Cucsa.038020Cla97C04G068730Watermelon (97103) v2cgywmbB013
Cucsa.038020Bhi03G002125Wax gourdcgywgoB013
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.038020Wild cucumber (PI 183967)cgycpiB011
Cucsa.038020Watermelon (Charleston Gray)cgywcgB013
Cucsa.038020Cucumber (Chinese Long) v2cgycuB011
Cucsa.038020Melon (DHL92) v3.5.1cgymeB011