Cucsa.012700 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.012700
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transmembrane protein, putative
Location	scaffold00164 : 414205 .. 414629 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTT

mRNA sequence

ATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAaagtggaagcagccgaggaagaggaagaagaagaagaaagaggaTCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTT

Coding sequence (CDS)

ATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTT

Protein sequence

MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLX

Homology

[Close]

BLAST of Cucsa.012700 vs. TrEMBL
Match: A0A0A0L7R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.5e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
           MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60

Query: 61  FVSKMNSNISSRAISMAKMISWRKVEAA-EEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120
           FVSKMNSNISSRAISMAKMISWRKVEAA EEEEEEEERGSGGCDFIDKDEEEEVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNL 142
           RGERCRPLEFSGKIDYDSDGNL
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNL 142

[Close]

BLAST of Cucsa.012700 vs. TrEMBL
Match: A0A059BTL4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-23
Identity = 62/124 (50.00%), Postives = 82/124 (66.13%), Query Frame = 1


Query: 26  FLILSTSVILSIFALLIFLCTSSRKSNKSQQ--------GRNNFVSKMNSNISSRAISMA 85
           FL++S   ILSI ++L FLC S RKS KS +             VS++NS+ISS+A+ MA
Sbjct: 28  FLLIS---ILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSKALLMA 87

Query: 86  KMISWRKVEAAEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIRGERCRPLEFSGKIDYDS 142
           KM+SWRK E  +EEE+ E            D +E +W+KTII+GERCRPL+FSGKI+YDS
Sbjct: 88  KMMSWRKTEGGQEEEDGE------------DSDEAIWKKTIIQGERCRPLDFSGKIEYDS 136

[Close]

BLAST of Cucsa.012700 vs. TrEMBL
Match: U5FKC5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03010g PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 65/152 (42.76%), Postives = 89/152 (58.55%), Query Frame = 1


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQ---- 60
           MARP   + N S  L  +  S   +F+      +LS+F+L+ FLC S  K+ KSQ+    
Sbjct: 1   MARPLLAMQNHSF-LSNIPVSNFIAFI-----AVLSVFSLVTFLCASHHKARKSQRQGDE 60

Query: 61  -------GRNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKDE 120
                  G    +SK+NS+I  +A SM KMISWRK+E  E+ +E+       CD    D 
Sbjct: 61  ESVISHSGEKRLLSKINSDIREKAHSMVKMISWRKLEQDEDCDED-------CD----DG 120

Query: 121 EEEVWRKTIIRGERCRPLEFSGKIDYDSDGNL 142
            EE+WR++I+ GERCRPL+FSGKI YD +GNL
Sbjct: 121 SEEIWRRSIVMGERCRPLDFSGKIMYDCEGNL 135

[Close]

BLAST of Cucsa.012700 vs. TrEMBL
Match: A0A068U546_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040182001 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.3e-20
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 1


Query: 19  FFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNNF--------VSKMNSNIS 78
           F     +FLI+  +V LSI +++  LC S  + ++ ++G            V+++ SN+S
Sbjct: 13  FLPPSITFLIMPIAV-LSILSVVALLCGSEARKSRWRRGEKTVRLGDNKKRVARLQSNLS 72

Query: 79  SRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIRGERCRPLEFS 138
           S+A+ +AKMISWRKV+   +E +E+E G         D+EE VWRKTII+GE+CRPL+FS
Sbjct: 73  SKALLLAKMISWRKVQ---DEGQEDEDGD--------DDEEAVWRKTIIKGEKCRPLDFS 131

Query: 139 GKIDYDSDGNL 142
           GKI YDSDGNL
Sbjct: 133 GKILYDSDGNL 131

[Close]

BLAST of Cucsa.012700 vs. TrEMBL
Match: D7TSS4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01600 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.3e-20
Identity = 65/148 (43.92%), Postives = 91/148 (61.49%), Query Frame = 1


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSR--KSNKSQQG- 60
           MARP P+++  +     L  +T F FLI++   I SI +L+ FLC S R  K +K ++  
Sbjct: 30  MARPLPSLALQNISFLTLPAATVF-FLIIA---IFSIISLVSFLCASHRITKPHKLKEEG 89

Query: 61  ----RNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKDEEEEV 120
               ++  V  +NSNISS+A+ M KM+SWRKV+   EE +    G         D++E V
Sbjct: 90  KGAVKSKLVRSLNSNISSKALLMVKMVSWRKVQVEGEEGDYNSDG---------DDDEAV 149

Query: 121 WRKTIIRGERCRPLEFSGKIDYDSDGNL 142
           W++TI+ GERCRPL+FSGKI YDS GNL
Sbjct: 150 WKRTIMMGERCRPLDFSGKIAYDSQGNL 164

[Close]

BLAST of Cucsa.012700 vs. NCBI nr
Match: gi|700202715|gb|KGN57848.1| (hypothetical protein Csa_3G348940 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 5.0e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
           MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60

Query: 61  FVSKMNSNISSRAISMAKMISWRKVEAA-EEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120
           FVSKMNSNISSRAISMAKMISWRKVEAA EEEEEEEERGSGGCDFIDKDEEEEVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNL 142
           RGERCRPLEFSGKIDYDSDGNL
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNL 142

[Close]

BLAST of Cucsa.012700 vs. NCBI nr
Match: gi|702386718|ref|XP_010064833.1| (PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis])

HSP 1 Score: 115.9 bits (289), Expect = 5.6e-23
Identity = 62/124 (50.00%), Postives = 82/124 (66.13%), Query Frame = 1


Query: 26  FLILSTSVILSIFALLIFLCTSSRKSNKSQQ--------GRNNFVSKMNSNISSRAISMA 85
           FL++S   ILSI ++L FLC S RKS KS +             VS++NS+ISS+A+ MA
Sbjct: 28  FLLIS---ILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSKALLMA 87

Query: 86  KMISWRKVEAAEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIRGERCRPLEFSGKIDYDS 142
           KM+SWRK E  +EEE+ E            D +E +W+KTII+GERCRPL+FSGKI+YDS
Sbjct: 88  KMMSWRKTEGGQEEEDGE------------DSDEAIWKKTIIQGERCRPLDFSGKIEYDS 136

[Close]

BLAST of Cucsa.012700 vs. NCBI nr
Match: gi|1021548419|ref|XP_016165658.1| (PREDICTED: uncharacterized protein LOC107608365 [Arachis ipaensis])

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-21
Identity = 60/126 (47.62%), Postives = 86/126 (68.25%), Query Frame = 1


Query: 26  FLILSTSVILSIFALLIFLCTS-------SRKSNKSQQGRNNFVSKMNSNISSRAIS-MA 85
           FL+L +  I SIF+++ FLC +       +R    +   +N  V+K+NSN+S+RA+S MA
Sbjct: 17  FLVLLS--IFSIFSVITFLCGTRKMKKFKARALESASSKKNKLVTKINSNLSNRAVSSMA 76

Query: 86  KMISWRKVEAAEEEEEEEERGSGGCDFIDKDE--EEEVWRKTIIRGERCRPLEFSGKIDY 142
           KM+SWRKV+A EEEEEE+E      D  D+ +  +E +W+K I+ GERCRP++FSGKI Y
Sbjct: 77  KMLSWRKVQATEEEEEEQEEIFYSSDDHDQHQKDDEAIWKKNILMGERCRPVDFSGKIIY 136

[Close]

BLAST of Cucsa.012700 vs. NCBI nr
Match: gi|1012204338|ref|XP_015931476.1| (PREDICTED: uncharacterized protein LOC107457810 [Arachis duranensis])

HSP 1 Score: 109.4 bits (272), Expect = 5.3e-21
Identity = 59/126 (46.83%), Postives = 86/126 (68.25%), Query Frame = 1


Query: 26  FLILSTSVILSIFALLIFLCTS-------SRKSNKSQQGRNNFVSKMNSNISSRAIS-MA 85
           FL+L +  I SIF+++ FLC +       +R    +   +N  ++K+NSN+S+RA+S MA
Sbjct: 17  FLVLLS--IFSIFSVITFLCGTRKMKKFKARALESASSKKNKLITKINSNLSNRAVSSMA 76

Query: 86  KMISWRKVEAAEEEEEEEERGSGGCDFIDKDE--EEEVWRKTIIRGERCRPLEFSGKIDY 142
           KM+SWRKV+A EEEEEE+E      D  D+ +  +E +W+K I+ GERCRP++FSGKI Y
Sbjct: 77  KMLSWRKVQATEEEEEEQEEIFYSSDDHDQHQKDDEAIWKKNILMGERCRPVDFSGKIIY 136

[Close]

BLAST of Cucsa.012700 vs. NCBI nr
Match: gi|566211031|ref|XP_006372589.1| (hypothetical protein POPTR_0017s03010g [Populus trichocarpa])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 65/152 (42.76%), Postives = 89/152 (58.55%), Query Frame = 1


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQ---- 60
           MARP   + N S  L  +  S   +F+      +LS+F+L+ FLC S  K+ KSQ+    
Sbjct: 1   MARPLLAMQNHSF-LSNIPVSNFIAFI-----AVLSVFSLVTFLCASHHKARKSQRQGDE 60

Query: 61  -------GRNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKDE 120
                  G    +SK+NS+I  +A SM KMISWRK+E  E+ +E+       CD    D 
Sbjct: 61  ESVISHSGEKRLLSKINSDIREKAHSMVKMISWRKLEQDEDCDED-------CD----DG 120

Query: 121 EEEVWRKTIIRGERCRPLEFSGKIDYDSDGNL 142
            EE+WR++I+ GERCRPL+FSGKI YD +GNL
Sbjct: 121 SEEIWRRSIVMGERCRPLDFSGKIMYDCEGNL 135

The following BLAST results are available for this feature:

BLAST of Cucsa.012700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7R8_CUCSA	3.5e-72	99.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1	[more]
A0A059BTL4_EUCGR	3.9e-23	50.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1	[more]
U5FKC5_POPTR	1.1e-20	42.76	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03010g PE=4 SV=1	[more]
A0A068U546_COFCA	5.3e-20	45.04	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040182001 PE=4 SV=1	[more]
D7TSS4_VITVI	5.3e-20	43.92	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01600 PE=4 SV=...	[more]

BLAST of Cucsa.012700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202715\|gb\|KGN57848.1\|	5.0e-72	99.30	hypothetical protein Csa_3G348940 [Cucumis sativus]	[more]
gi\|702386718\|ref\|XP_010064833.1\|	5.6e-23	50.00	PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis]	[more]
gi\|1021548419\|ref\|XP_016165658.1\|	4.0e-21	47.62	PREDICTED: uncharacterized protein LOC107608365 [Arachis ipaensis]	[more]
gi\|1012204338\|ref\|XP_015931476.1\|	5.3e-21	46.83	PREDICTED: uncharacterized protein LOC107457810 [Arachis duranensis]	[more]
gi\|566211031\|ref\|XP_006372589.1\|	1.5e-20	42.76	hypothetical protein POPTR_0017s03010g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.012700.1	Cucsa.012700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 1..141 score: 5.5
None	No IPR available	PANTHER	PTHR33237:SF10	SUBFAMILY NOT NAMED	coord: 1..141 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.012700	Cla013168	Watermelon (97103) v1	cgywmB367
Cucsa.012700	Csa3G348940	Cucumber (Chinese Long) v2	cgycuB290
Cucsa.012700	MELO3C020292	Melon (DHL92) v3.5.1	cgymeB343
Cucsa.012700	ClCG05G010930	Watermelon (Charleston Gray)	cgywcgB345
Cucsa.012700	CSPI03G21890	Wild cucumber (PI 183967)	cgycpiB299
Cucsa.012700	CmaCh01G003560	Cucurbita maxima (Rimu)	cgycmaB0551
Cucsa.012700	CmoCh01G003720	Cucurbita moschata (Rifu)	cgycmoB0552
Cucsa.012700	Cp4.1LG02g16800	Cucurbita pepo (Zucchini)	cgycpeB0531
Cucsa.012700	MELO3C020292.2	Melon (DHL92) v3.6.1	cgymedB338
Cucsa.012700	CsaV3_3G021650	Cucumber (Chinese Long) v3	cgycucB303
Cucsa.012700	Cla97C05G093230	Watermelon (97103) v2	cgywmbB351
Cucsa.012700	Bhi01G001347	Wax gourd	cgywgoB393
Cucsa.012700	Carg07443	Silver-seed gourd	carcgyB0859

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.012700	Cucurbita maxima (Rimu)	cgycmaB0548
Cucsa.012700	Cucurbita moschata (Rifu)	cgycmoB0549
Cucsa.012700	Cucurbita pepo (Zucchini)	cgycpeB0532
Cucsa.012700	Bottle gourd (USVL1VR-Ls)	cgylsiB322