ClCG05G010930 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G010930
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 12603121 .. 12603552 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGGTTTTTCCCAAGCATTTCAAATCCTTCTCATCATCATCATCATCTTTCATTTTCCTCAACGAATTTCTCATTTCTCATCGCTTCAATCGCAGTTCTCTCCATCTTCGCGCTCGTGATTTTCCTCTGCACCTCTTCCAGAAAATCGAACAAATCGCAACGGAGGAATTTCGTGTCGAAGATGAATAGTAACATCAGTTCTAGGGCGATTTCAATGGCGAAGATGATTTCGTGGAGAAAAGTGGAGGCAGCCGATGAAGAAAGAGGAAGTAGTGATTTGAGTGGTGAGGATGAAGAAGAAGAAGAAGAGGTTTGGAGGAAGACTATTATTAGAGGTGAACGGTGTCGTCCGTTGGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATTTGTTGAGTGATTCAAACAGGGAATTCAAATAA

mRNA sequence

ATGGCCAGGTTTTTCCCAAGCATTTCAAATCCTTCTCATCATCATCATCATCTTTCATTTTCCTCAACGAATTTCTCATTTCTCATCGCTTCAATCGCAGTTCTCTCCATCTTCGCGCTCGTGATTTTCCTCTGCACCTCTTCCAGAAAATCGAACAAATCGCAACGGAGGAATTTCGTGTCGAAGATGAATAGTAACATCAGTTCTAGGGCGATTTCAATGGCGAAGATGATTTCGTGGAGAAAAGTGGAGGCAGCCGATGAAGAAAGAGGAAGTAGTGATTTGAGTGGTGAGGATGAAGAAGAAGAAGAAGAGGTTTGGAGGAAGACTATTATTAGAGGTGAACGGTGTCGTCCGTTGGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATTTGTTGAGTGATTCAAACAGGGAATTCAAATAA

Coding sequence (CDS)

ATGGCCAGGTTTTTCCCAAGCATTTCAAATCCTTCTCATCATCATCATCATCTTTCATTTTCCTCAACGAATTTCTCATTTCTCATCGCTTCAATCGCAGTTCTCTCCATCTTCGCGCTCGTGATTTTCCTCTGCACCTCTTCCAGAAAATCGAACAAATCGCAACGGAGGAATTTCGTGTCGAAGATGAATAGTAACATCAGTTCTAGGGCGATTTCAATGGCGAAGATGATTTCGTGGAGAAAAGTGGAGGCAGCCGATGAAGAAAGAGGAAGTAGTGATTTGAGTGGTGAGGATGAAGAAGAAGAAGAAGAGGTTTGGAGGAAGACTATTATTAGAGGTGAACGGTGTCGTCCGTTGGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATTTGTTGAGTGATTCAAACAGGGAATTCAAATAA

Protein sequence

MARFFPSISNPSHHHHHLSFSSTNFSFLIASIAVLSIFALVIFLCTSSRKSNKSQRRNFVSKMNSNISSRAISMAKMISWRKVEAADEERGSSDLSGEDEEEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLSDSNREFK

Homology

[Close]

BLAST of ClCG05G010930 vs. TrEMBL
Match: A0A0A0L7R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.9e-51
Identity = 118/152 (77.63%), Postives = 126/152 (82.89%), Query Frame = 1


Query: 1   MARFFPSISNPSHHHHHLSFSSTNFSFLIASIAV-LSIFALVIFLCTSSRKSNKSQ--RR 60
           MAR FP+ISN SH  H L F ST+FSFLI S +V LSIFAL+IFLCTSSRKSNKSQ  R 
Sbjct: 1   MARPFPTISNLSHPLH-LLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRN 60

Query: 61  NFVSKMNSNISSRAISMAKMISWRKVEAADEE------RGSSDLSGEDEEEEEEVWRKTI 120
           NFVSKMNSNISSRAISMAKMISWRKVEAA+EE      RGS      D++EEEEVWRKTI
Sbjct: 61  NFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTI 120

Query: 121 IRGERCRPLEFSGKIDYDSDGNLLSDSNREFK 144
           IRGERCRPLEFSGKIDYDSDGNLL DSNR+FK
Sbjct: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of ClCG05G010930 vs. TrEMBL
Match: V4S8Q0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013091mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.7e-24
Identity = 64/135 (47.41%), Postives = 84/135 (62.22%), Query Frame = 1


Query: 17  HLSFSSTNFSFLIASIAVLSIFALVIFLCTSSRK-------------SNKSQRRNFVSKM 76
           +L F ST FS   A IAVLS+F+LV FLC S R+             S  S     ++K+
Sbjct: 12  NLQFRSTPFSLFFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSNEMRLLTKL 71

Query: 77  NSNISSRAISMAKMISWRKVEAADEERGSSDLSGEDEEEEEEVWRKTIIRGERCRPLEFS 136
           NSNIS +A  + K+ISW+KV+  DE+             ++ VWR+TI+RGERCRPL+FS
Sbjct: 72  NSNISGKAHHLVKLISWKKVQVEDED-------------DDAVWRRTIMRGERCRPLDFS 131

Query: 137 GKIDYDSDGNLLSDS 139
           GKI+YDS+GNLL DS
Sbjct: 132 GKIEYDSEGNLLPDS 133

[Close]

BLAST of ClCG05G010930 vs. TrEMBL
Match: A0A068U546_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040182001 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.1e-24
Identity = 65/138 (47.10%), Postives = 91/138 (65.94%), Query Frame = 1


Query: 16  HHLSFSSTNFSFLIASIAVLSIFALVIFLCTSSRKSNKSQR----------RNFVSKMNS 75
           H  +F   + +FLI  IAVLSI ++V  LC S  + ++ +R          +  V+++ S
Sbjct: 9   HKPAFLPPSITFLIMPIAVLSILSVVALLCGSEARKSRWRRGEKTVRLGDNKKRVARLQS 68

Query: 76  NISSRAISMAKMISWRKVEAADEERGSSDLSGEDEEEEEEVWRKTIIRGERCRPLEFSGK 135
           N+SS+A+ +AKMISWRKV+    + G  D  G+D+EE   VWRKTII+GE+CRPL+FSGK
Sbjct: 69  NLSSKALLLAKMISWRKVQ----DEGQEDEDGDDDEEA--VWRKTIIKGEKCRPLDFSGK 128

Query: 136 IDYDSDGNLLSDSNREFK 144
           I YDSDGNL+ DS +  K
Sbjct: 129 ILYDSDGNLIPDSPQPSK 140

[Close]

BLAST of ClCG05G010930 vs. TrEMBL
Match: A0A059BTL4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-23
Identity = 58/126 (46.03%), Postives = 85/126 (67.46%), Query Frame = 1


Query: 21  SSTNFSFLIASIAVLSIFALVIFLCTSSRKSNKSQR----------RNFVSKMNSNISSR 80
           S T+ + +   I++LSI +++ FLC S RKS KS +          +  VS++NS+ISS+
Sbjct: 20  SVTSLTSIFLLISILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSK 79

Query: 81  AISMAKMISWRKVEAADEERGSSDLSGEDEEEEEEVWRKTIIRGERCRPLEFSGKIDYDS 137
           A+ MAKM+SWRK E   EE        + E+ +E +W+KTII+GERCRPL+FSGKI+YDS
Sbjct: 80  ALLMAKMMSWRKTEGGQEEE-------DGEDSDEAIWKKTIIQGERCRPLDFSGKIEYDS 138

[Close]

BLAST of ClCG05G010930 vs. TrEMBL
Match: A0A061EHV2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019235 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.0e-23
Identity = 66/127 (51.97%), Postives = 83/127 (65.35%), Query Frame = 1


Query: 19  SFSSTNFSFLIASIAVLSIFALVIFLCTSSR-------KSNK---SQRRNFVSKMNSNIS 78
           SFS    +FL A ++V S+F++ +FLC S +       K+N+   S  R  +SKMNSN+ 
Sbjct: 16  SFSPVPVNFLFAILSVFSVFSITVFLCASHKNRGFQRQKNNEESMSSERKLLSKMNSNLG 75

Query: 79  SRAISMAKMISWRKVEAADEERGSSDLSGEDEEEEEEVWRKTIIRGERCRPLEFSGKIDY 136
           S+A  M KMISWRK +A +EE    D +G DE     VWRKTII GERCRPL+FSGKI Y
Sbjct: 76  SKAQLMVKMISWRKRQAEEEE----DYNGSDEA----VWRKTIIMGERCRPLDFSGKILY 134

[Close]

BLAST of ClCG05G010930 vs. NCBI nr
Match: gi|700202715|gb|KGN57848.1| (hypothetical protein Csa_3G348940 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 8.4e-51
Identity = 118/152 (77.63%), Postives = 126/152 (82.89%), Query Frame = 1


Query: 1   MARFFPSISNPSHHHHHLSFSSTNFSFLIASIAV-LSIFALVIFLCTSSRKSNKSQ--RR 60
           MAR FP+ISN SH  H L F ST+FSFLI S +V LSIFAL+IFLCTSSRKSNKSQ  R 
Sbjct: 1   MARPFPTISNLSHPLH-LLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRN 60

Query: 61  NFVSKMNSNISSRAISMAKMISWRKVEAADEE------RGSSDLSGEDEEEEEEVWRKTI 120
           NFVSKMNSNISSRAISMAKMISWRKVEAA+EE      RGS      D++EEEEVWRKTI
Sbjct: 61  NFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTI 120

Query: 121 IRGERCRPLEFSGKIDYDSDGNLLSDSNREFK 144
           IRGERCRPLEFSGKIDYDSDGNLL DSNR+FK
Sbjct: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of ClCG05G010930 vs. NCBI nr
Match: gi|985454016|ref|XP_015386969.1| (PREDICTED: uncharacterized protein LOC107177554 [Citrus sinensis])

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 65/135 (48.15%), Postives = 85/135 (62.96%), Query Frame = 1


Query: 17  HLSFSSTNFSFLIASIAVLSIFALVIFLCTSSRK-------------SNKSQRRNFVSKM 76
           +L F ST FS L A IAVLS+F+LV FLC S R+             S  S     ++K+
Sbjct: 12  NLQFRSTPFSLLFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSSEMRLLTKL 71

Query: 77  NSNISSRAISMAKMISWRKVEAADEERGSSDLSGEDEEEEEEVWRKTIIRGERCRPLEFS 136
           NSNIS +A  + K+ISW+KV+  DE+             ++ VWR+TI+RGERCRPL+FS
Sbjct: 72  NSNISGKAHHLVKLISWKKVQVEDED-------------DDAVWRRTIMRGERCRPLDFS 131

Query: 137 GKIDYDSDGNLLSDS 139
           GKI+YDS+GNLL DS
Sbjct: 132 GKIEYDSEGNLLPDS 133

[Close]

BLAST of ClCG05G010930 vs. NCBI nr
Match: gi|567876107|ref|XP_006430643.1| (hypothetical protein CICLE_v10013091mg [Citrus clementina])

HSP 1 Score: 119.8 bits (299), Expect = 3.9e-24
Identity = 64/135 (47.41%), Postives = 84/135 (62.22%), Query Frame = 1


Query: 17  HLSFSSTNFSFLIASIAVLSIFALVIFLCTSSRK-------------SNKSQRRNFVSKM 76
           +L F ST FS   A IAVLS+F+LV FLC S R+             S  S     ++K+
Sbjct: 12  NLQFRSTPFSLFFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSNEMRLLTKL 71

Query: 77  NSNISSRAISMAKMISWRKVEAADEERGSSDLSGEDEEEEEEVWRKTIIRGERCRPLEFS 136
           NSNIS +A  + K+ISW+KV+  DE+             ++ VWR+TI+RGERCRPL+FS
Sbjct: 72  NSNISGKAHHLVKLISWKKVQVEDED-------------DDAVWRRTIMRGERCRPLDFS 131

Query: 137 GKIDYDSDGNLLSDS 139
           GKI+YDS+GNLL DS
Sbjct: 132 GKIEYDSEGNLLPDS 133

[Close]

BLAST of ClCG05G010930 vs. NCBI nr
Match: gi|661894272|emb|CDP02713.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 118.6 bits (296), Expect = 8.8e-24
Identity = 65/138 (47.10%), Postives = 91/138 (65.94%), Query Frame = 1


Query: 16  HHLSFSSTNFSFLIASIAVLSIFALVIFLCTSSRKSNKSQR----------RNFVSKMNS 75
           H  +F   + +FLI  IAVLSI ++V  LC S  + ++ +R          +  V+++ S
Sbjct: 9   HKPAFLPPSITFLIMPIAVLSILSVVALLCGSEARKSRWRRGEKTVRLGDNKKRVARLQS 68

Query: 76  NISSRAISMAKMISWRKVEAADEERGSSDLSGEDEEEEEEVWRKTIIRGERCRPLEFSGK 135
           N+SS+A+ +AKMISWRKV+    + G  D  G+D+EE   VWRKTII+GE+CRPL+FSGK
Sbjct: 69  NLSSKALLLAKMISWRKVQ----DEGQEDEDGDDDEEA--VWRKTIIKGEKCRPLDFSGK 128

Query: 136 IDYDSDGNLLSDSNREFK 144
           I YDSDGNL+ DS +  K
Sbjct: 129 ILYDSDGNLIPDSPQPSK 140

[Close]

BLAST of ClCG05G010930 vs. NCBI nr
Match: gi|702386718|ref|XP_010064833.1| (PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis])

HSP 1 Score: 116.3 bits (290), Expect = 4.4e-23
Identity = 58/126 (46.03%), Postives = 85/126 (67.46%), Query Frame = 1


Query: 21  SSTNFSFLIASIAVLSIFALVIFLCTSSRKSNKSQR----------RNFVSKMNSNISSR 80
           S T+ + +   I++LSI +++ FLC S RKS KS +          +  VS++NS+ISS+
Sbjct: 20  SVTSLTSIFLLISILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSK 79

Query: 81  AISMAKMISWRKVEAADEERGSSDLSGEDEEEEEEVWRKTIIRGERCRPLEFSGKIDYDS 137
           A+ MAKM+SWRK E   EE        + E+ +E +W+KTII+GERCRPL+FSGKI+YDS
Sbjct: 80  ALLMAKMMSWRKTEGGQEEE-------DGEDSDEAIWKKTIIQGERCRPLDFSGKIEYDS 138

The following BLAST results are available for this feature:

BLAST of ClCG05G010930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7R8_CUCSA	5.9e-51	77.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1	[more]
V4S8Q0_9ROSI	2.7e-24	47.41	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013091mg PE=4 SV=1	[more]
A0A068U546_COFCA	6.1e-24	47.10	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040182001 PE=4 SV=1	[more]
A0A059BTL4_EUCGR	3.0e-23	46.03	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1	[more]
A0A061EHV2_THECC	4.0e-23	51.97	Uncharacterized protein OS=Theobroma cacao GN=TCM_019235 PE=4 SV=1	[more]

BLAST of ClCG05G010930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202715\|gb\|KGN57848.1\|	8.4e-51	77.63	hypothetical protein Csa_3G348940 [Cucumis sativus]	[more]
gi\|985454016\|ref\|XP_015386969.1\|	1.4e-24	48.15	PREDICTED: uncharacterized protein LOC107177554 [Citrus sinensis]	[more]
gi\|567876107\|ref\|XP_006430643.1\|	3.9e-24	47.41	hypothetical protein CICLE_v10013091mg [Citrus clementina]	[more]
gi\|661894272\|emb\|CDP02713.1\|	8.8e-24	47.10	unnamed protein product [Coffea canephora]	[more]
gi\|702386718\|ref\|XP_010064833.1\|	4.4e-23	46.03	PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G010930.1	ClCG05G010930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 1..141 score: 1.7
None	No IPR available	PANTHER	PTHR33237:SF10	SUBFAMILY NOT NAMED	coord: 1..141 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G010930	Csa3G348940	Cucumber (Chinese Long) v2	cuwcgB233
ClCG05G010930	MELO3C020292	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G010930	Cla013168	Watermelon (97103) v1	wcgwmB286
ClCG05G010930	Cla97C05G093230	Watermelon (97103) v2	wcgwmbB229
ClCG05G010930	Bhi01G001347	Wax gourd	wcgwgoB427
ClCG05G010930	CSPI03G21890	Wild cucumber (PI 183967)	cpiwcgB240
ClCG05G010930	Cucsa.012700	Cucumber (Gy14) v1	cgywcgB345
ClCG05G010930	CmaCh01G003560	Cucurbita maxima (Rimu)	cmawcgB407
ClCG05G010930	CmoCh01G003720	Cucurbita moschata (Rifu)	cmowcgB406
ClCG05G010930	Cp4.1LG02g16800	Cucurbita pepo (Zucchini)	cpewcgB518
ClCG05G010930	MELO3C020292.2	Melon (DHL92) v3.6.1	medwcgB417
ClCG05G010930	Carg07443	Silver-seed gourd	carwcgB0739
ClCG05G010930	CsaV3_3G021650	Cucumber (Chinese Long) v3	cucwcgB241

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G010930	Silver-seed gourd	carwcgB0168
ClCG05G010930	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G010930	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G010930	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G010930	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G010930	Cucumber (Gy14) v2	cgybwcgB217