MELO3C020292.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020292.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr06 : 14784045 .. 14784789 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACAAAATCACCATTCTCTCTCTTACCTTCTTCTTCCCTCCCCGCCATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCCCATCATCCCCATCTTCTATTTTTCTCAACTAATTTCTCTTTTCCCATCCTTTCAACCTCAACTATCCTCTCCATCTTCGCCCTTCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCGCAGCAGGGGAAGACGACTTTCGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATTATTTCGTGGAGAAAAGTGGAAGCAGCCGACGAATTAGAAGAAGAAAGAGGATCAGGAAGTTGTGATGAATTAGAGGATGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGGTGTCGTCCCCTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAATCTGATGGTTCTTCTTTTTACTCCTGCGCTCTTTCTTCTTCCCTTTTCCTTTGTTTCCATTCCGTGAAACTTCCTTCACTCTCAACTATTCTTTTTCCTAAAATAAAAAGGCATATTTAATTTATCATTTTTTTAAAAAAAAAAGATTTAAAATGTTTTATTATTTATGTTAAGAATACTCTGATGATTCTTATTATGATGCTTTCTAACGTTTAGGATATTTATGGGTTTGAGATGAAAACATCTTTTTCTTACAT

mRNA sequence

ACACAAAATCACCATTCTCTCTCTTACCTTCTTCTTCCCTCCCCGCCATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCCCATCATCCCCATCTTCTATTTTTCTCAACTAATTTCTCTTTTCCCATCCTTTCAACCTCAACTATCCTCTCCATCTTCGCCCTTCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCGCAGCAGGGGAAGACGACTTTCGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATTATTTCGTGGAGAAAAGTGGAAGCAGCCGACGAATTAGAAGAAGAAAGAGGATCAGGAAGTTGTGATGAATTAGAGGATGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGGTGTCGTCCCCTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAATCTGATGGTTCTTCTTTTTACTCCTGCGCTCTTTCTTCTTCCCTTTTCCTTTGTTTCCATTCCGTGAAACTTCCTTCACTCTCAACTATTCTTTTTCCTAAAATAAAAAGGCATATTTAATTTATCATTTTTTTAAAAAAAAAAGATTTAAAATGTTTTATTATTTATGTTAAGAATACTCTGATGATTCTTATTATGATGCTTTCTAACGTTTAGGATATTTATGGGTTTGAGATGAAAACATCTTTTTCTTACAT

Coding sequence (CDS)

ATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCCCATCATCCCCATCTTCTATTTTTCTCAACTAATTTCTCTTTTCCCATCCTTTCAACCTCAACTATCCTCTCCATCTTCGCCCTTCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCGCAGCAGGGGAAGACGACTTTCGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATTATTTCGTGGAGAAAAGTGGAAGCAGCCGACGAATTAGAAGAAGAAAGAGGATCAGGAAGTTGTGATGAATTAGAGGATGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGGTGTCGTCCCCTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAA

Protein sequence

MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKSQQGKTTFVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK

Homology

[Close]

BLAST of MELO3C020292.2 vs. NCBI nr
Match: KGN57848.1 (hypothetical protein Csa_3G348940 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 2.9e-50
Identity = 116/151 (76.82%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 1   MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKSQQGKTT 60
           MARPFPTISNLSH  HLLFFST+FSF ILSTS ILSIFALLIFLCTSSRKSNKSQQG+  
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60

Query: 61  FVSKMNSNISSRAISMAKIISWRKVE-----AADELEEERGSGSCDELEDEEEVWRKTII 120
           FVSKMNSNISSRAISMAK+ISWRKVE                          EVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 147
           RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of MELO3C020292.2 vs. NCBI nr
Match: XP_023899477.1 (uncharacterized protein LOC112011334 [Quercus suber])

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 75/149 (50.34%), Postives = 96/149 (64.43%), Query Frame = 0


Query: 1   MARPFPTISNLSHHPHLLFFS--TNFSFPILSTSTILSIFALLIFLCTSSRKSNKSQQGK 60
           MARP   I +L  H +L F S   NF F I++   + SIF+++ FLCTSS K+ KS   K
Sbjct: 1   MARPL--IPSLPIH-NLWFTSIPVNFFFVIIA---VASIFSIMAFLCTSS-KTKKSLTEK 60

Query: 61  TTFV-------SKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEVWR 120
           T+F+       SK+NSNISS+A+S+ K++SWRKV  +   E E           +E VWR
Sbjct: 61  TSFLSKEKKVFSKLNSNISSKALSLVKMVSWRKVAGS---EGEXXXXXXXXXXXDEAVWR 120

Query: 121 KTIIRGERCRPLEFSGKIDYDSDGNLLCD 141
           KTII+GERCRPL+FSGKI YDS GNLL D
Sbjct: 121 KTIIKGERCRPLDFSGKIVYDSQGNLLPD 139

[Close]

BLAST of MELO3C020292.2 vs. NCBI nr
Match: POE51937.1 (hypothetical protein CFP56_77054 [Quercus suber])

HSP 1 Score: 103.2 bits (256), Expect = 7.6e-19
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 34  ILSIFALLIFLCTSSRKSNKSQQGKTTFV-------SKMNSNISSRAISMAKIISWRKVE 93
           + SIF+++ FLCTSS K+ KS   KT+F+       SK+NSNISS+A+S+ K++SWRKV 
Sbjct: 143 VASIFSIMAFLCTSS-KTKKSLTEKTSFLSKEKKVFSKLNSNISSKALSLVKMVSWRKVA 202

Query: 94  AADELEEERGSGSCDELEDEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCD 141
            +   E E           +E VWRKTII+GERCRPL+FSGKI YDS GNLL D
Sbjct: 203 GS---EGEXXXXXXXXXXXDEAVWRKTIIKGERCRPLDFSGKIVYDSQGNLLPD 252

[Close]

BLAST of MELO3C020292.2 vs. NCBI nr
Match: XP_007217346.2 (uncharacterized protein LOC18783089 [Prunus persica])

HSP 1 Score: 102.8 bits (255), Expect = 9.9e-19
Identity = 70/153 (45.75%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 1   MARPF-PTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKSQQGK- 60
           MARP  P+ S  SH  HL    ++F F ++      S+F+L+IFLCT SRKS KS + K 
Sbjct: 1   MARPLAPSFSMASH--HLFQHQSHFLFALI---VFFSMFSLVIFLCT-SRKSKKSHEKKE 60

Query: 61  ----------TTFVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEE 120
                       F++K+NS ISS+A++MAK++SWRK+EA                     
Sbjct: 61  EAITNSESKDVKFIAKLNSKISSKALAMAKMVSWRKMEAG----XXXXXXXXXXXXXXXA 120

Query: 121 VWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 142
           VWRK+II GERC PL FSGKIDYDSDGNL  +S
Sbjct: 121 VWRKSIIMGERCAPLNFSGKIDYDSDGNLQPES 143

[Close]

BLAST of MELO3C020292.2 vs. NCBI nr
Match: PQM43042.1 (uncharacterized protein Pyn_17678 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 70/153 (45.75%), Postives = 91/153 (59.48%), Query Frame = 0


Query: 1   MARPF-PTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKSQQGK- 60
           MARP  P+ S  SH  HL    ++F F ++      S+F+LLIFLC +S KS KS + K 
Sbjct: 96  MARPLAPSFSMASH--HLFQHPSHFLFALV---VFFSMFSLLIFLC-ASHKSKKSHEKKE 155

Query: 61  ----------TTFVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEE 120
                       F++K+NS ISS+A++MAK++SWRK+EA    EE               
Sbjct: 156 EAITNSESKDVKFIAKLNSKISSKALAMAKMVSWRKMEAG---EEXXXXXXXXXXXXXXX 215

Query: 121 VWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 142
           VWRK+II GERC PL FSGKIDYDS+GNL  +S
Sbjct: 216 VWRKSIIMGERCAPLNFSGKIDYDSEGNLQPES 239

[Close]

BLAST of MELO3C020292.2 vs. TAIR10
Match: AT1G49000.1 (unknown protein)

HSP 1 Score: 45.4 bits (106), Expect = 3.4e-05
Identity = 18/36 (50.00%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 103 LEDEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLL 139
           +E+E  +W++ I+ G +C PL+FSG I YDS+G LL
Sbjct: 101 MEEEHGLWQREILMGGKCEPLDFSGVIYYDSNGRLL 136

[Close]

BLAST of MELO3C020292.2 vs. TrEMBL
Match: tr|A0A0A0L7R8|A0A0A0L7R8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.9e-50
Identity = 116/151 (76.82%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 1   MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKSQQGKTT 60
           MARPFPTISNLSH  HLLFFST+FSF ILSTS ILSIFALLIFLCTSSRKSNKSQQG+  
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60

Query: 61  FVSKMNSNISSRAISMAKIISWRKVE-----AADELEEERGSGSCDELEDEEEVWRKTII 120
           FVSKMNSNISSRAISMAK+ISWRKVE                          EVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 147
           RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of MELO3C020292.2 vs. TrEMBL
Match: tr|A0A2P4H6T2|A0A2P4H6T2_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_77054 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.0e-19
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 34  ILSIFALLIFLCTSSRKSNKSQQGKTTFV-------SKMNSNISSRAISMAKIISWRKVE 93
           + SIF+++ FLCTSS K+ KS   KT+F+       SK+NSNISS+A+S+ K++SWRKV 
Sbjct: 143 VASIFSIMAFLCTSS-KTKKSLTEKTSFLSKEKKVFSKLNSNISSKALSLVKMVSWRKVA 202

Query: 94  AADELEEERGSGSCDELEDEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCD 141
            +   E E           +E VWRKTII+GERCRPL+FSGKI YDS GNLL D
Sbjct: 203 GS---EGEXXXXXXXXXXXDEAVWRKTIIKGERCRPLDFSGKIVYDSQGNLLPD 252

[Close]

BLAST of MELO3C020292.2 vs. TrEMBL
Match: tr|A0A2C9WM60|A0A2C9WM60_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G115600 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 56/131 (42.75%), Postives = 86/131 (65.65%), Query Frame = 0


Query: 16  HLLFFSTNFSFPILSTSTILSIFALLIFLCTSSR-----KSNKSQQGKTTFVSKMNSNIS 75
           +L F +T     ++   T+ S+F+++IFLC+S +     ++   +  +   +SK+NS IS
Sbjct: 15  NLPFSATLVCSSLVFVITVFSLFSIVIFLCSSHKTKKLDRAKDQESSEKKLLSKINSGIS 74

Query: 76  SRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEVWRKTIIRGERCRPLEFSGKID 135
           S+A SM K+ISWRK++ AD+          D+ E EE +WRKTI++GERCRPL+FSGKI+
Sbjct: 75  SKAHSMVKMISWRKMQQADD-------DDLDDYESEEAIWRKTIMKGERCRPLDFSGKIE 134

Query: 136 YDSDGNLLCDS 142
           YD+ GNL+  S
Sbjct: 135 YDAQGNLVPQS 138

[Close]

BLAST of MELO3C020292.2 vs. TrEMBL
Match: tr|V4S8Q0|V4S8Q0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013091mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.5e-18
Identity = 64/152 (42.11%), Postives = 92/152 (60.53%), Query Frame = 0


Query: 1   MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKS----QQ 60
           MARP   +       +L F ST FS    +   +LS+F+L+ FLC S R++  S    ++
Sbjct: 1   MARPVIDLPK----QNLQFRSTPFSL-FFALIAVLSVFSLVTFLCASHRRAKNSLKAEKE 60

Query: 61  GKTT-------FVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEV 120
           G ++        ++K+NSNIS +A  + K+ISW+KV+  D              ED++ V
Sbjct: 61  GMSSQPSNEMRLLTKLNSNISGKAHHLVKLISWKKVQVED--------------EDDDAV 120

Query: 121 WRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 142
           WR+TI+RGERCRPL+FSGKI+YDS+GNLL DS
Sbjct: 121 WRRTIMRGERCRPLDFSGKIEYDSEGNLLPDS 133

[Close]

BLAST of MELO3C020292.2 vs. TrEMBL
Match: tr|A0A061EHV2|A0A061EHV2_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019235 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.2e-18
Identity = 65/146 (44.52%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 1   MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTS--------SRKSN 60
           MAR    +S    +P       NF F ILS   + S+F++ +FLC S         + + 
Sbjct: 1   MARSLLIVSLALQNPSFSPVPVNFLFAILS---VFSVFSITVFLCASHKNRGFQRQKNNE 60

Query: 61  KSQQGKTTFVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEVWRK 120
           +S   +   +SKMNSN+ S+A  M K+ISWRK +A +E E+  GS        +E VWRK
Sbjct: 61  ESMSSERKLLSKMNSNLGSKAQLMVKMISWRKRQAEEE-EDYNGS--------DEAVWRK 120

Query: 121 TIIRGERCRPLEFSGKIDYDSDGNLL 139
           TII GERCRPL+FSGKI YDS GNLL
Sbjct: 121 TIIMGERCRPLDFSGKILYDSQGNLL 134

The following BLAST results are available for this feature:

BLAST of MELO3C020292.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57848.1	2.9e-50	76.82	hypothetical protein Csa_3G348940 [Cucumis sativus]	[more]
XP_023899477.1	1.2e-19	50.34	uncharacterized protein LOC112011334 [Quercus suber]	[more]
POE51937.1	7.6e-19	53.51	hypothetical protein CFP56_77054 [Quercus suber]	[more]
XP_007217346.2	9.9e-19	45.75	uncharacterized protein LOC18783089 [Prunus persica]	[more]
PQM43042.1	1.7e-18	45.75	uncharacterized protein Pyn_17678 [Prunus yedoensis var. nudiflora]	[more]

BLAST of MELO3C020292.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49000.1	3.4e-05	50.00	unknown protein	[more]

BLAST of MELO3C020292.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C020292.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7R8\|A0A0A0L7R8_CUCSA	1.9e-50	76.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1	[more]
tr\|A0A2P4H6T2\|A0A2P4H6T2_QUESU	5.0e-19	53.51	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_77054 PE=4 SV=1	[more]
tr\|A0A2C9WM60\|A0A2C9WM60_MANES	1.5e-18	42.75	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G115600 PE=4 SV=...	[more]
tr\|V4S8Q0\|V4S8Q0_9ROSI	5.5e-18	42.11	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013091mg PE=4 ...	[more]
tr\|A0A061EHV2\|A0A061EHV2_THECC	7.2e-18	44.52	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019235 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020292.2.1	MELO3C020292.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 27..142
None	No IPR available	PANTHER	PTHR33237:SF10	SUBFAMILY NOT NAMED	coord: 27..142

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020292.2	Csa3G348940	Cucumber (Chinese Long) v2	cumedB239
MELO3C020292.2	CSPI03G21890	Wild cucumber (PI 183967)	cpimedB240
MELO3C020292.2	Cucsa.012700	Cucumber (Gy14) v1	cgymedB338
MELO3C020292.2	CmaCh01G003560	Cucurbita maxima (Rimu)	cmamedB496
MELO3C020292.2	CmoCh01G003720	Cucurbita moschata (Rifu)	cmomedB483
MELO3C020292.2	Cp4.1LG02g16800	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C020292.2	Cla013168	Watermelon (97103) v1	medwmB448
MELO3C020292.2	ClCG05G010930	Watermelon (Charleston Gray)	medwcgB417
MELO3C020292.2	Cla97C05G093230	Watermelon (97103) v2	medwmbB424
MELO3C020292.2	Bhi01G001347	Wax gourd	medwgoB531
MELO3C020292.2	Carg07443	Silver-seed gourd	carmedB0771
MELO3C020292.2	CsaV3_3G021650	Cucumber (Chinese Long) v3	cucmedB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020292.2	Cucumber (Gy14) v2	cgybmedB216
MELO3C020292.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C020292.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C020292.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C020292.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C020292.2	Silver-seed gourd	carmedB0185