Cp4.1LG02g16800 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g16800
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG02 : 12589944 .. 12590396 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGCCGTTCCCAAGCTTTTCGAATCACTCTTATCATCTTCCATTTTCCTCAGCATCGCTCATCGCTTCAATCGCAGTGCTCTCTATCTTCGCGCTCGTGATTTTTCTCTGCACTTCCTCGAGAAAATCGAAGAAACCGAACCTATTGCAGCCGAGGAACTTTGTGGCGAAGGTTAACAGTAACATCAGTTCTCGAGCGATTTCCATCGCGAAGATGATTTCGTGGCGGAAAGTCGAGGCGGCGGATGAAGATGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTTTGATTTGAGTGGAGATGATTATGATGATGAGGTTTGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGTCCGCTTGAATTTTCAGGCAAAATTGATTATGATTCTGATGGTAATTTGTTGTGTGATTCGAAGAGGGAGTTTAAATCCGTTGGATAA

mRNA sequence

ATGGCCAAGCCGTTCCCAAGCTTTTCGAATCACTCTTATCATCTTCCATTTTCCTCAGCATCGCTCATCGCTTCAATCGCAGTGCTCTCTATCTTCGCGCTCGTGATTTTTCTCTGCACTTCCTCGAGAAAATCGAAGAAACCGAACCTATTGCAGCCGAGGAACTTTGTGGCGAAGGTTAACAGTAACATCAGTTCTCGAGCGATTTCCATCGCGAAGATGATTTCGTGGCGGAAAGTCGAGGCGGCGGATGAAGATGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTTTGATTTGAGTGGAGATGATTATGATGATGAGGTTTGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGTCCGCTTGAATTTTCAGGCAAAATTGATTATGATTCTGATGGTAATTTGTTGTGTGATTCGAAGAGGGAGTTTAAATCCGTTGGATAA

Coding sequence (CDS)

ATGGCCAAGCCGTTCCCAAGCTTTTCGAATCACTCTTATCATCTTCCATTTTCCTCAGCATCGCTCATCGCTTCAATCGCAGTGCTCTCTATCTTCGCGCTCGTGATTTTTCTCTGCACTTCCTCGAGAAAATCGAAGAAACCGAACCTATTGCAGCCGAGGAACTTTGTGGCGAAGGTTAACAGTAACATCAGTTCTCGAGCGATTTCCATCGCGAAGATGATTTCGTGGCGGAAAGTCGAGGCGGCGGATGAAGATGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTTTGATTTGAGTGGAGATGATTATGATGATGAGGTTTGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGTCCGCTTGAATTTTCAGGCAAAATTGATTATGATTCTGATGGTAATTTGTTGTGTGATTCGAAGAGGGAGTTTAAATCCGTTGGATAA

Protein sequence

MAKPFPSFSNHSYHLPFSSASLIASIAVLSIFALVIFLCTSSRKSKKPNLLQPRNFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFKSVG
Homology
[Close]
BLAST of Cp4.1LG02g16800 vs. TrEMBL
Match: A0A0A0L7R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-39
Identity = 99/153 (64.71%), Postives = 116/153 (75.82%), Query Frame = 1 

Query: 1   MAKPFPSFSN--HSYHLPFSSAS----LIASIAVLSIFALVIFLCTSSRKSKKPNLLQPR 60
           MA+PFP+ SN  H  HL F S      ++++  +LSIFAL+IFLCTSSRKS K    +  
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGR-N 60

Query: 61  NFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGGGGFDLSGDDYDDEVWRKT 120
           NFV+K+NSNISSRAIS+AKMISWRKVEAA+E+E      G GG  D    D ++EVWRKT
Sbjct: 61  NFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGG-CDFIDKDEEEEVWRKT 120

Query: 121 IIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK 148
           IIRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Sbjct: 121 IIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]
BLAST of Cp4.1LG02g16800 vs. TrEMBL
Match: U5FKC5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03010g PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-21
Identity = 64/151 (42.38%), Postives = 89/151 (58.94%), Query Frame = 1 

Query: 1   MAKPFPSFSNHSYHLPFSSASLIASIAVLSIFALVIFLCTSSRKSKKPNLLQP------- 60
           MA+P  +  NHS+      ++ IA IAVLS+F+LV FLC S  K++K             
Sbjct: 1   MARPLLAMQNHSFLSNIPVSNFIAFIAVLSVFSLVTFLCASHHKARKSQRQGDEESVISH 60

Query: 61  ---RNFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGGGGFDLSGDDYDDEV 120
              +  ++K+NS+I  +A S+ KMISWRK+E  DED             D   DD  +E+
Sbjct: 61  SGEKRLLSKINSDIREKAHSMVKMISWRKLEQ-DED------------CDEDCDDGSEEI 120

Query: 121 WRKTIIRGERCRPLEFSGKIDYDSDGNLLCD 142
           WR++I+ GERCRPL+FSGKI YD +GNL+ D
Sbjct: 121 WRRSIVMGERCRPLDFSGKIMYDCEGNLIPD 138

[Close]
BLAST of Cp4.1LG02g16800 vs. TrEMBL
Match: V4S8Q0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013091mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.0e-21
Identity = 68/153 (44.44%), Postives = 87/153 (56.86%), Query Frame = 1 

Query: 1   MAKPFPSFSNHSYHLPFSSASLI-ASIAVLSIFALVIFLCTSSRKSKKPNLL-------Q 60
           MA+P       +     +  SL  A IAVLS+F+LV FLC S R++K            Q
Sbjct: 1   MARPVIDLPKQNLQFRSTPFSLFFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQ 60

Query: 61  PRN---FVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGGGGFDLSGDDYDDE 120
           P N    + K+NSNIS +A  + K+ISW+KV+  DED                    DD 
Sbjct: 61  PSNEMRLLTKLNSNISGKAHHLVKLISWKKVQVEDED--------------------DDA 120

Query: 121 VWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 143
           VWR+TI+RGERCRPL+FSGKI+YDS+GNLL DS
Sbjct: 121 VWRRTIMRGERCRPLDFSGKIEYDSEGNLLPDS 133

[Close]
BLAST of Cp4.1LG02g16800 vs. TrEMBL
Match: A0A059BTL4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-21
Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = 1 

Query: 18  SSASLIASIAVLSIFALVIFLCTSSRKSKKPNL-------LQPRNFVAKVNSNISSRAIS 77
           S  S+   I++LSI +++ FLC S RKSKK             +  V+++NS+ISS+A+ 
Sbjct: 23  SLTSIFLLISILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSKALL 82

Query: 78  IAKMISWRKVEAADEDEGGGGGGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKI 137
           +AKM+SWRK E   E+E               G+D D+ +W+KTII+GERCRPL+FSGKI
Sbjct: 83  MAKMMSWRKTEGGQEEE--------------DGEDSDEAIWKKTIIQGERCRPLDFSGKI 137

Query: 138 DYDSDGNLL 140
           +YDS GN++
Sbjct: 143 EYDSKGNIV 137

[Close]
BLAST of Cp4.1LG02g16800 vs. TrEMBL
Match: A0A068U546_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040182001 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.6e-21
Identity = 71/140 (50.71%), Postives = 89/140 (63.57%), Query Frame = 1 

Query: 15  LPFSSASLIASIAVLSIFALVIFLCTS-SRKS------KKPNLLQPRNFVAKVNSNISSR 74
           LP S   LI  IAVLSI ++V  LC S +RKS      K   L   +  VA++ SN+SS+
Sbjct: 14  LPPSITFLIMPIAVLSILSVVALLCGSEARKSRWRRGEKTVRLGDNKKRVARLQSNLSSK 73

Query: 75  AISIAKMISWRKVEAADEDEGGGGGGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFS 134
           A+ +AKMISWRKV+    DEG           D  GDD ++ VWRKTII+GE+CRPL+FS
Sbjct: 74  ALLLAKMISWRKVQ----DEGQE---------DEDGDDDEEAVWRKTIIKGEKCRPLDFS 133

Query: 135 GKIDYDSDGNLLCDSKREFK 148
           GKI YDSDGNL+ DS +  K
Sbjct: 134 GKILYDSDGNLIPDSPQPSK 140

[Close]
BLAST of Cp4.1LG02g16800 vs. NCBI nr
Match: gi|700202715|gb|KGN57848.1| (hypothetical protein Csa_3G348940 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39
Identity = 99/153 (64.71%), Postives = 116/153 (75.82%), Query Frame = 1 

Query: 1   MAKPFPSFSN--HSYHLPFSSAS----LIASIAVLSIFALVIFLCTSSRKSKKPNLLQPR 60
           MA+PFP+ SN  H  HL F S      ++++  +LSIFAL+IFLCTSSRKS K    +  
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGR-N 60

Query: 61  NFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGGGGFDLSGDDYDDEVWRKT 120
           NFV+K+NSNISSRAIS+AKMISWRKVEAA+E+E      G GG  D    D ++EVWRKT
Sbjct: 61  NFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGG-CDFIDKDEEEEVWRKT 120

Query: 121 IIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK 148
           IIRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Sbjct: 121 IIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]
BLAST of Cp4.1LG02g16800 vs. NCBI nr
Match: gi|985454016|ref|XP_015386969.1| (PREDICTED: uncharacterized protein LOC107177554 [Citrus sinensis])

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-21
Identity = 64/137 (46.72%), Postives = 81/137 (59.12%), Query Frame = 1 

Query: 16  PFSSASLIASIAVLSIFALVIFLCTSSRKSKKPNLLQPRNF----------VAKVNSNIS 75
           PFS   L A IAVLS+F+LV FLC S R++K     +              + K+NSNIS
Sbjct: 19  PFSL--LFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSSEMRLLTKLNSNIS 78

Query: 76  SRAISIAKMISWRKVEAADEDEGGGGGGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLE 135
            +A  + K+ISW+KV+  DED                    DD VWR+TI+RGERCRPL+
Sbjct: 79  GKAHHLVKLISWKKVQVEDED--------------------DDAVWRRTIMRGERCRPLD 133

Query: 136 FSGKIDYDSDGNLLCDS 143
           FSGKI+YDS+GNLL DS
Sbjct: 139 FSGKIEYDSEGNLLPDS 133

[Close]
BLAST of Cp4.1LG02g16800 vs. NCBI nr
Match: gi|566211031|ref|XP_006372589.1| (hypothetical protein POPTR_0017s03010g [Populus trichocarpa])

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-21
Identity = 64/151 (42.38%), Postives = 89/151 (58.94%), Query Frame = 1 

Query: 1   MAKPFPSFSNHSYHLPFSSASLIASIAVLSIFALVIFLCTSSRKSKKPNLLQP------- 60
           MA+P  +  NHS+      ++ IA IAVLS+F+LV FLC S  K++K             
Sbjct: 1   MARPLLAMQNHSFLSNIPVSNFIAFIAVLSVFSLVTFLCASHHKARKSQRQGDEESVISH 60

Query: 61  ---RNFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGGGGFDLSGDDYDDEV 120
              +  ++K+NS+I  +A S+ KMISWRK+E  DED             D   DD  +E+
Sbjct: 61  SGEKRLLSKINSDIREKAHSMVKMISWRKLEQ-DED------------CDEDCDDGSEEI 120

Query: 121 WRKTIIRGERCRPLEFSGKIDYDSDGNLLCD 142
           WR++I+ GERCRPL+FSGKI YD +GNL+ D
Sbjct: 121 WRRSIVMGERCRPLDFSGKIMYDCEGNLIPD 138

[Close]
BLAST of Cp4.1LG02g16800 vs. NCBI nr
Match: gi|567876107|ref|XP_006430643.1| (hypothetical protein CICLE_v10013091mg [Citrus clementina])

HSP 1 Score: 109.8 bits (273), Expect = 4.3e-21
Identity = 68/153 (44.44%), Postives = 87/153 (56.86%), Query Frame = 1 

Query: 1   MAKPFPSFSNHSYHLPFSSASLI-ASIAVLSIFALVIFLCTSSRKSKKPNLL-------Q 60
           MA+P       +     +  SL  A IAVLS+F+LV FLC S R++K            Q
Sbjct: 1   MARPVIDLPKQNLQFRSTPFSLFFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQ 60

Query: 61  PRN---FVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGGGGFDLSGDDYDDE 120
           P N    + K+NSNIS +A  + K+ISW+KV+  DED                    DD 
Sbjct: 61  PSNEMRLLTKLNSNISGKAHHLVKLISWKKVQVEDED--------------------DDA 120

Query: 121 VWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 143
           VWR+TI+RGERCRPL+FSGKI+YDS+GNLL DS
Sbjct: 121 VWRRTIMRGERCRPLDFSGKIEYDSEGNLLPDS 133

[Close]
BLAST of Cp4.1LG02g16800 vs. NCBI nr
Match: gi|702386718|ref|XP_010064833.1| (PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis])

HSP 1 Score: 109.4 bits (272), Expect = 5.6e-21
Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = 1 

Query: 18  SSASLIASIAVLSIFALVIFLCTSSRKSKKPNL-------LQPRNFVAKVNSNISSRAIS 77
           S  S+   I++LSI +++ FLC S RKSKK             +  V+++NS+ISS+A+ 
Sbjct: 23  SLTSIFLLISILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSKALL 82

Query: 78  IAKMISWRKVEAADEDEGGGGGGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKI 137
           +AKM+SWRK E   E+E               G+D D+ +W+KTII+GERCRPL+FSGKI
Sbjct: 83  MAKMMSWRKTEGGQEEE--------------DGEDSDEAIWKKTIIQGERCRPLDFSGKI 137

Query: 138 DYDSDGNLL 140
           +YDS GN++
Sbjct: 143 EYDSKGNIV 137

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g16800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g16800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7R8_CUCSA1.1e-3964.71Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1[more]
U5FKC5_POPTR2.3e-2142.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03010g PE=4 SV=1[more]
V4S8Q0_9ROSI3.0e-2144.44Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013091mg PE=4 SV=1[more]
A0A059BTL4_EUCGR3.9e-2144.19Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1[more]
A0A068U546_COFCA6.6e-2150.71Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040182001 PE=4 SV=1[more]
BLAST of Cp4.1LG02g16800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g16800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202715|gb|KGN57848.1|1.6e-3964.71hypothetical protein Csa_3G348940 [Cucumis sativus][more]
gi|985454016|ref|XP_015386969.1|3.3e-2146.72PREDICTED: uncharacterized protein LOC107177554 [Citrus sinensis][more]
gi|566211031|ref|XP_006372589.1|3.3e-2142.38hypothetical protein POPTR_0017s03010g [Populus trichocarpa][more]
gi|567876107|ref|XP_006430643.1|4.3e-2144.44hypothetical protein CICLE_v10013091mg [Citrus clementina][more]
gi|702386718|ref|XP_010064833.1|5.6e-2144.19PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g16800.1Cp4.1LG02g16800.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33237FAMILY NOT NAMEDcoord: 1..145
score: 3.8
NoneNo IPR availablePANTHERPTHR33237:SF10SUBFAMILY NOT NAMEDcoord: 1..145
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g16800Cucsa.012700Cucumber (Gy14) v1cgycpeB0531
Cp4.1LG02g16800CmaCh01G003560Cucurbita maxima (Rimu)cmacpeB491
Cp4.1LG02g16800CmoCh01G003720Cucurbita moschata (Rifu)cmocpeB449
Cp4.1LG02g16800Cla013168Watermelon (97103) v1cpewmB568
Cp4.1LG02g16800Csa3G348940Cucumber (Chinese Long) v2cpecuB547
Cp4.1LG02g16800MELO3C020292Melon (DHL92) v3.5.1cpemeB529
Cp4.1LG02g16800ClCG05G010930Watermelon (Charleston Gray)cpewcgB518
Cp4.1LG02g16800CSPI03G21890Wild cucumber (PI 183967)cpecpiB552
Cp4.1LG02g16800MELO3C020292.2Melon (DHL92) v3.6.1cpemedB630
Cp4.1LG02g16800CsaV3_3G021650Cucumber (Chinese Long) v3cpecucB0686
Cp4.1LG02g16800Bhi01G001347Wax gourdcpewgoB0681
Cp4.1LG02g16800Carg07443Silver-seed gourdcarcpeB1072
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g16800Cucurbita pepo (Zucchini)cpecpeB449
Cp4.1LG02g16800Cucurbita maxima (Rimu)cmacpeB279
Cp4.1LG02g16800Cucurbita moschata (Rifu)cmocpeB241
Cp4.1LG02g16800Bottle gourd (USVL1VR-Ls)cpelsiB470
Cp4.1LG02g16800Cucumber (Gy14) v2cgybcpeB380
Cp4.1LG02g16800Silver-seed gourdcarcpeB0256