MELO3C020292 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020292
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_8
Location	chr6 : 13706900 .. 13707643 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACAAAATCACCATTCTCTCTCTTACCTTCTTCTTCCCTCCCCGCCATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCCCATCATCCCCATCTTCTATTTTTCTCAACTAATTTCTCTTTTCCCATCCTTTCAACCTCAACTATCCTCTCCATCTTCGCCCTTCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCGCAGCAGGGGAAGACGACTTTCGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATTATTTCGTGGAGAAAAGTGGAAGCAGCCGACGAATTAGAAGAAGAAAGAGGATCAGGAAGTTGTGATGAATTAGAGGATGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGGTGTCGTCCCCTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAATCTGATGGTTCTTCTTTTTACTCCTGCGCTCTTTCTTCTTCCCTTTTCCTTTGTTTCCATTCCGTGAAACTTCCTTCACTCTCAACTATTCTTTTTCCTAAAATAAAAAGGCATATTTAATTTATCATTTTTTTAAAAAAAAAGATTTAAAATGTTTTATTATTTATGTTAAGAATACTCTGATGATTCTTATTATGATGCTTTCTAACGTTTAGGATATTTATGGGTTTGAGATGAAAACATCTTTTTCTTACAT

mRNA sequence

ACACAAAATCACCATTCTCTCTCTTACCTTCTTCTTCCCTCCCCGCCATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCCCATCATCCCCATCTTCTATTTTTCTCAACTAATTTCTCTTTTCCCATCCTTTCAACCTCAACTATCCTCTCCATCTTCGCCCTTCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCGCAGCAGGGGAAGACGACTTTCGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATTATTTCGTGGAGAAAAGTGGAAGCAGCCGACGAATTAGAAGAAGAAAGAGGATCAGGAAGTTGTGATGAATTAGAGGATGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGGTGTCGTCCCCTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAATCTGATGGTTCTTCTTTTTACTCCTGCGCTCTTTCTTCTTCCCTTTTCCTTTGTTTCCATTCCGTGAAACTTCCTTCACTCTCAACTATTCTTTTTCCTAAAATAAAAAGGCATATTTAATTTATCATTTTTTTAAAAAAAAAGATTTAAAATGTTTTATTATTTATGTTAAGAATACTCTGATGATTCTTATTATGATGCTTTCTAACGTTTAGGATATTTATGGGTTTGAGATGAAAACATCTTTTTCTTACAT

Coding sequence (CDS)

ATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCCCATCATCCCCATCTTCTATTTTTCTCAACTAATTTCTCTTTTCCCATCCTTTCAACCTCAACTATCCTCTCCATCTTCGCCCTTCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCGCAGCAGGGGAAGACGACTTTCGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATTATTTCGTGGAGAAAAGTGGAAGCAGCCGACGAATTAGAAGAAGAAAGAGGATCAGGAAGTTGTGATGAATTAGAGGATGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGGTGTCGTCCCCTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAA

Protein sequence

MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKSQQGKTTFVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK*

Homology

[Close]

BLAST of MELO3C020292 vs. TrEMBL
Match: A0A0A0L7R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 8.1e-64
Identity = 130/151 (86.09%), Postives = 137/151 (90.73%), Query Frame = 1


Query: 1   MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKSQQGKTT 60
           MARPFPTISNLSH  HLLFFST+FSF ILSTS ILSIFALLIFLCTSSRKSNKSQQG+  
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60

Query: 61  FVSKMNSNISSRAISMAKIISWRKVEAA---DELEEERGSGSCD--ELEDEEEVWRKTII 120
           FVSKMNSNISSRAISMAK+ISWRKVEAA   +E EEERGSG CD  + ++EEEVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 147
           RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of MELO3C020292 vs. TrEMBL
Match: A0A059BTL4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.5e-21
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 1


Query: 33  TILSIFALLIFLCTSSRKSNKS--------QQGKTTFVSKMNSNISSRAISMAKIISWRK 92
           +ILSI ++L FLC S RKS KS           +   VS++NS+ISS+A+ MAK++SWRK
Sbjct: 32  SILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSKALLMAKMMSWRK 91

Query: 93  VEAADELEEERGSGSCDELEDEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLL 139
            E     EEE G  S      +E +W+KTII+GERCRPL+FSGKI+YDS GN++
Sbjct: 92  TEGGQ--EEEDGEDS------DEAIWKKTIIQGERCRPLDFSGKIEYDSKGNIV 137

[Close]

BLAST of MELO3C020292 vs. TrEMBL
Match: V4S8Q0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013091mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.5e-21
Identity = 64/152 (42.11%), Postives = 92/152 (60.53%), Query Frame = 1


Query: 1   MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKS----QQ 60
           MARP   +       +L F ST FS    +   +LS+F+L+ FLC S R++  S    ++
Sbjct: 1   MARPVIDLPK----QNLQFRSTPFSL-FFALIAVLSVFSLVTFLCASHRRAKNSLKAEKE 60

Query: 61  GKTT-------FVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEV 120
           G ++        ++K+NSNIS +A  + K+ISW+KV+  DE              D++ V
Sbjct: 61  GMSSQPSNEMRLLTKLNSNISGKAHHLVKLISWKKVQVEDE--------------DDDAV 120

Query: 121 WRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 142
           WR+TI+RGERCRPL+FSGKI+YDS+GNLL DS
Sbjct: 121 WRRTIMRGERCRPLDFSGKIEYDSEGNLLPDS 133

[Close]

BLAST of MELO3C020292 vs. TrEMBL
Match: U5FKC5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03010g PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.5e-21
Identity = 62/151 (41.06%), Postives = 89/151 (58.94%), Query Frame = 1


Query: 1   MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKSQQ---- 60
           MARP   + N S      F S       ++   +LS+F+L+ FLC S  K+ KSQ+    
Sbjct: 1   MARPLLAMQNHS------FLSNIPVSNFIAFIAVLSVFSLVTFLCASHHKARKSQRQGDE 60

Query: 61  -------GKTTFVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEV 120
                  G+   +SK+NS+I  +A SM K+ISWRK+E  ++ +E+   GS       EE+
Sbjct: 61  ESVISHSGEKRLLSKINSDIREKAHSMVKMISWRKLEQDEDCDEDCDDGS-------EEI 120

Query: 121 WRKTIIRGERCRPLEFSGKIDYDSDGNLLCD 141
           WR++I+ GERCRPL+FSGKI YD +GNL+ D
Sbjct: 121 WRRSIVMGERCRPLDFSGKIMYDCEGNLIPD 138

[Close]

BLAST of MELO3C020292 vs. TrEMBL
Match: A0A061EHV2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019235 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.5e-21
Identity = 65/146 (44.52%), Postives = 85/146 (58.22%), Query Frame = 1


Query: 1   MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTS--------SRKSN 60
           MAR    +S    +P       NF F ILS   + S+F++ +FLC S         + + 
Sbjct: 1   MARSLLIVSLALQNPSFSPVPVNFLFAILS---VFSVFSITVFLCASHKNRGFQRQKNNE 60

Query: 61  KSQQGKTTFVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEVWRK 120
           +S   +   +SKMNSN+ S+A  M K+ISWRK +A +E E+  GS        +E VWRK
Sbjct: 61  ESMSSERKLLSKMNSNLGSKAQLMVKMISWRKRQAEEE-EDYNGS--------DEAVWRK 120

Query: 121 TIIRGERCRPLEFSGKIDYDSDGNLL 139
           TII GERCRPL+FSGKI YDS GNLL
Sbjct: 121 TIIMGERCRPLDFSGKILYDSQGNLL 134

[Close]

BLAST of MELO3C020292 vs. NCBI nr
Match: gi|700202715|gb|KGN57848.1| (hypothetical protein Csa_3G348940 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-63
Identity = 130/151 (86.09%), Postives = 137/151 (90.73%), Query Frame = 1


Query: 1   MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKSQQGKTT 60
           MARPFPTISNLSH  HLLFFST+FSF ILSTS ILSIFALLIFLCTSSRKSNKSQQG+  
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60

Query: 61  FVSKMNSNISSRAISMAKIISWRKVEAA---DELEEERGSGSCD--ELEDEEEVWRKTII 120
           FVSKMNSNISSRAISMAK+ISWRKVEAA   +E EEERGSG CD  + ++EEEVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 147
           RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of MELO3C020292 vs. NCBI nr
Match: gi|985454016|ref|XP_015386969.1| (PREDICTED: uncharacterized protein LOC107177554 [Citrus sinensis])

HSP 1 Score: 109.0 bits (271), Expect = 7.1e-21
Identity = 64/152 (42.11%), Postives = 93/152 (61.18%), Query Frame = 1


Query: 1   MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKS----QQ 60
           MARP   +       +L F ST FS  + +   +LS+F+L+ FLC S R++  S    ++
Sbjct: 1   MARPVIDLPK----QNLQFRSTPFSL-LFALIAVLSVFSLVTFLCASHRRAKNSLKAEKE 60

Query: 61  GKTT-------FVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEV 120
           G ++        ++K+NSNIS +A  + K+ISW+KV+  DE              D++ V
Sbjct: 61  GMSSQPSSEMRLLTKLNSNISGKAHHLVKLISWKKVQVEDE--------------DDDAV 120

Query: 121 WRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 142
           WR+TI+RGERCRPL+FSGKI+YDS+GNLL DS
Sbjct: 121 WRRTIMRGERCRPLDFSGKIEYDSEGNLLPDS 133

[Close]

BLAST of MELO3C020292 vs. NCBI nr
Match: gi|1021548419|ref|XP_016165658.1| (PREDICTED: uncharacterized protein LOC107608365 [Arachis ipaensis])

HSP 1 Score: 109.0 bits (271), Expect = 7.1e-21
Identity = 63/144 (43.75%), Postives = 92/144 (63.89%), Query Frame = 1


Query: 15  PHLLFFSTNFSFPILSTSTILSIFALLIFLCTS-------SRKSNKSQQGKTTFVSKMNS 74
           P LL  S   + P L   +I SIF+++ FLC +       +R    +   K   V+K+NS
Sbjct: 4   PLLLASSMPKTTPFLVLLSIFSIFSVITFLCGTRKMKKFKARALESASSKKNKLVTKINS 63

Query: 75  NISSRAIS-MAKIISWRKVEAADELEEER-----GSGSCDELE-DEEEVWRKTIIRGERC 134
           N+S+RA+S MAK++SWRKV+A +E EEE+      S   D+ + D+E +W+K I+ GERC
Sbjct: 64  NLSNRAVSSMAKMLSWRKVQATEEEEEEQEEIFYSSDDHDQHQKDDEAIWKKNILMGERC 123

Query: 135 RPLEFSGKIDYDSDGNLLCDSNRD 145
           RP++FSGKI YD+ GNL+ D +RD
Sbjct: 124 RPVDFSGKIIYDAHGNLVRDLSRD 147

[Close]

BLAST of MELO3C020292 vs. NCBI nr
Match: gi|702386718|ref|XP_010064833.1| (PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis])

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 1


Query: 33  TILSIFALLIFLCTSSRKSNKS--------QQGKTTFVSKMNSNISSRAISMAKIISWRK 92
           +ILSI ++L FLC S RKS KS           +   VS++NS+ISS+A+ MAK++SWRK
Sbjct: 32  SILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSKALLMAKMMSWRK 91

Query: 93  VEAADELEEERGSGSCDELEDEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLL 139
            E     EEE G  S      +E +W+KTII+GERCRPL+FSGKI+YDS GN++
Sbjct: 92  TEGGQ--EEEDGEDS------DEAIWKKTIIQGERCRPLDFSGKIEYDSKGNIV 137

[Close]

BLAST of MELO3C020292 vs. NCBI nr
Match: gi|566211031|ref|XP_006372589.1| (hypothetical protein POPTR_0017s03010g [Populus trichocarpa])

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 62/151 (41.06%), Postives = 89/151 (58.94%), Query Frame = 1


Query: 1   MARPFPTISNLSHHPHLLFFSTNFSFPILSTSTILSIFALLIFLCTSSRKSNKSQQ---- 60
           MARP   + N S      F S       ++   +LS+F+L+ FLC S  K+ KSQ+    
Sbjct: 1   MARPLLAMQNHS------FLSNIPVSNFIAFIAVLSVFSLVTFLCASHHKARKSQRQGDE 60

Query: 61  -------GKTTFVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEV 120
                  G+   +SK+NS+I  +A SM K+ISWRK+E  ++ +E+   GS       EE+
Sbjct: 61  ESVISHSGEKRLLSKINSDIREKAHSMVKMISWRKLEQDEDCDEDCDDGS-------EEI 120

Query: 121 WRKTIIRGERCRPLEFSGKIDYDSDGNLLCD 141
           WR++I+ GERCRPL+FSGKI YD +GNL+ D
Sbjct: 121 WRRSIVMGERCRPLDFSGKIMYDCEGNLIPD 138

The following BLAST results are available for this feature:

BLAST of MELO3C020292 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7R8_CUCSA	8.1e-64	86.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1	[more]
A0A059BTL4_EUCGR	8.5e-21	50.88	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1	[more]
V4S8Q0_9ROSI	8.5e-21	42.11	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013091mg PE=4 SV=1	[more]
U5FKC5_POPTR	8.5e-21	41.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03010g PE=4 SV=1	[more]
A0A061EHV2_THECC	8.5e-21	44.52	Uncharacterized protein OS=Theobroma cacao GN=TCM_019235 PE=4 SV=1	[more]

BLAST of MELO3C020292 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202715\|gb\|KGN57848.1\|	1.2e-63	86.09	hypothetical protein Csa_3G348940 [Cucumis sativus]	[more]
gi\|985454016\|ref\|XP_015386969.1\|	7.1e-21	42.11	PREDICTED: uncharacterized protein LOC107177554 [Citrus sinensis]	[more]
gi\|1021548419\|ref\|XP_016165658.1\|	7.1e-21	43.75	PREDICTED: uncharacterized protein LOC107608365 [Arachis ipaensis]	[more]
gi\|702386718\|ref\|XP_010064833.1\|	1.2e-20	50.88	PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis]	[more]
gi\|566211031\|ref\|XP_006372589.1\|	1.2e-20	41.06	hypothetical protein POPTR_0017s03010g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU58880	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020292T1	MELO3C020292T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU58880	MU58880	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 1..138 score: 2.9
None	No IPR available	PANTHER	PTHR33237:SF10	SUBFAMILY NOT NAMED	coord: 1..138 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020292	Csa3G348940	Cucumber (Chinese Long) v2	cumeB246
MELO3C020292	Cla013168	Watermelon (97103) v1	mewmB461
MELO3C020292	ClCG05G010930	Watermelon (Charleston Gray)	mewcgB427
MELO3C020292	Cla97C05G093230	Watermelon (97103) v2	mewmbB434
MELO3C020292	Bhi01G001347	Wax gourd	mewgoB530
MELO3C020292	CSPI03G21890	Wild cucumber (PI 183967)	cpimeB243
MELO3C020292	Cucsa.012700	Cucumber (Gy14) v1	cgymeB343
MELO3C020292	CmaCh01G003560	Cucurbita maxima (Rimu)	cmameB431
MELO3C020292	CmoCh01G003720	Cucurbita moschata (Rifu)	cmomeB421
MELO3C020292	Cp4.1LG02g16800	Cucurbita pepo (Zucchini)	cpemeB529
MELO3C020292	Carg07443	Silver-seed gourd	carmeB0756
MELO3C020292	CsaV3_3G021650	Cucumber (Chinese Long) v3	cucmeB249

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020292	Cucurbita maxima (Rimu)	cmameB243
MELO3C020292	Cucurbita moschata (Rifu)	cmomeB231
MELO3C020292	Wild cucumber (PI 183967)	cpimeB241
MELO3C020292	Cucurbita pepo (Zucchini)	cpemeB586
MELO3C020292	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C020292	Cucumber (Gy14) v2	cgybmeB212
MELO3C020292	Silver-seed gourd	carmeB0181