Cla97C05G093230 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G093230
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Transmembrane protein, putative
Location	Cla97Chr05 : 11939666 .. 11940097 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGGTTTTTCCCAAGCATTTCAAATCCTTCTCATCATCATCATCATCTTTCATTTTCCTCAACGAATTTCTCATTTCTCATCGCTTCAATCGCAGTTCTCTCCATCTTCGCGCTCGTGATTTTCCTCTGCACCTCTTCCAGAAAATCGAACAAATCGCAACGGAGGAATTTCGTGTCGAAGATGAATAGTAACATCAGTTCTAGGGCGATTTCAATGGCGAAGATGATTTCGTGGAGAAAAGTGGAGGCAGCCGATGAAGAAAGAGGAAGTAGTGATTTGAGTGGTGAGGATGAAGAAGAAGAAGAAGAGGTTTGGAGGAAGACTATTATTAGAGGTGAACGGTGTCGTCCGTTGGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATTTGTTGAGTGATTCAAACAGGGAATTCAAATAA

mRNA sequence

ATGGCCAGGTTTTTCCCAAGCATTTCAAATCCTTCTCATCATCATCATCATCTTTCATTTTCCTCAACGAATTTCTCATTTCTCATCGCTTCAATCGCAGTTCTCTCCATCTTCGCGCTCGTGATTTTCCTCTGCACCTCTTCCAGAAAATCGAACAAATCGCAACGGAGGAATTTCGTGTCGAAGATGAATAGTAACATCAGTTCTAGGGCGATTTCAATGGCGAAGATGATTTCGTGGAGAAAAGTGGAGGCAGCCGATGAAGAAAGAGGAAGTAGTGATTTGAGTGGTGAGGATGAAGAAGAAGAAGAAGAGGTTTGGAGGAAGACTATTATTAGAGGTGAACGGTGTCGTCCGTTGGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATTTGTTGAGTGATTCAAACAGGGAATTCAAATAA

Coding sequence (CDS)

ATGGCCAGGTTTTTCCCAAGCATTTCAAATCCTTCTCATCATCATCATCATCTTTCATTTTCCTCAACGAATTTCTCATTTCTCATCGCTTCAATCGCAGTTCTCTCCATCTTCGCGCTCGTGATTTTCCTCTGCACCTCTTCCAGAAAATCGAACAAATCGCAACGGAGGAATTTCGTGTCGAAGATGAATAGTAACATCAGTTCTAGGGCGATTTCAATGGCGAAGATGATTTCGTGGAGAAAAGTGGAGGCAGCCGATGAAGAAAGAGGAAGTAGTGATTTGAGTGGTGAGGATGAAGAAGAAGAAGAAGAGGTTTGGAGGAAGACTATTATTAGAGGTGAACGGTGTCGTCCGTTGGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATTTGTTGAGTGATTCAAACAGGGAATTCAAATAA

Protein sequence

MARFFPSISNPSHHHHHLSFSSTNFSFLIASIAVLSIFALVIFLCTSSRKSNKSQRRNFVSKMNSNISSRAISMAKMISWRKVEAADEERGSSDLSGEDEEEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLSDSNREFK

Homology

[Close]

BLAST of Cla97C05G093230 vs. NCBI nr
Match: KGN57848.1 (hypothetical protein Csa_3G348940 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 3.2e-38
Identity = 110/152 (72.37%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 1   MARFFPSISNPSHXXXXXSFSSTNFSFLIASIAV-LSIFALVIFLCTSSRKSNKSQ--RR 60
           MAR FP+ISN SH      F ST+FSFLI S +V LSIFAL+IFLCTSSRKSNKSQ  R 
Sbjct: 1   MARPFPTISNLSHPLHLL-FFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRN 60

Query: 61  NFVSKMNSNISSRAISMAKMISWRKVE------AADEERGSSDLSGEXXXXXXXVWRKTI 120
           NFVSKMNSNISSRAISMAKMISWRKVE                    XXXXXX VWRKTI
Sbjct: 61  NFVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTI 120

Query: 121 IRGERCRPLEFSGKIDYDSDGNLLSDSNREFK 144
           IRGERCRPLEFSGKIDYDSDGNLL DSNR+FK
Sbjct: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of Cla97C05G093230 vs. NCBI nr
Match: XP_015386969.1 (uncharacterized protein LOC107177554 [Citrus sinensis])

HSP 1 Score: 110.5 bits (275), Expect = 4.6e-21
Identity = 64/132 (48.48%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 20  FSSTNFSFLIASIAVLSIFALVIFLCTSSRK-------------SNKSQRRNFVSKMNSN 79
           F ST FS L A IAVLS+F+LV FLC S R+             S  S     ++K+NSN
Sbjct: 15  FRSTPFSLLFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSSEMRLLTKLNSN 74

Query: 80  ISSRAISMAKMISWRKVEAADEERGSSDLSGEXXXXXXXVWRKTIIRGERCRPLEFSGKI 139
           IS +A  + K+ISW+KV+  DE+  +             VWR+TI+RGERCRPL+FSGKI
Sbjct: 75  ISGKAHHLVKLISWKKVQVEDEDDDA-------------VWRRTIMRGERCRPLDFSGKI 133

[Close]

BLAST of Cla97C05G093230 vs. NCBI nr
Match: XP_006430643.1 (uncharacterized protein LOC18037988 [Citrus clementina] >ESR43883.1 hypothetical protein CICLE_v10013091mg [Citrus clementina])

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-20
Identity = 63/132 (47.73%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 20  FSSTNFSFLIASIAVLSIFALVIFLCTSSRK-------------SNKSQRRNFVSKMNSN 79
           F ST FS   A IAVLS+F+LV FLC S R+             S  S     ++K+NSN
Sbjct: 15  FRSTPFSLFFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSNEMRLLTKLNSN 74

Query: 80  ISSRAISMAKMISWRKVEAADEERGSSDLSGEXXXXXXXVWRKTIIRGERCRPLEFSGKI 139
           IS +A  + K+ISW+KV+  DE+  +             VWR+TI+RGERCRPL+FSGKI
Sbjct: 75  ISGKAHHLVKLISWKKVQVEDEDDDA-------------VWRRTIMRGERCRPLDFSGKI 133

[Close]

BLAST of Cla97C05G093230 vs. NCBI nr
Match: XP_023899477.1 (uncharacterized protein LOC112011334 [Quercus suber])

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19
Identity = 66/126 (52.38%), Postives = 87/126 (69.05%), Query Frame = 0


Query: 20  FSSTNFSFLIASIAVLSIFALVIFLCTSSR-KSNKSQRRNFV-------SKMNSNISSRA 79
           F+S   +F    IAV SIF+++ FLCTSS+ K + +++ +F+       SK+NSNISS+A
Sbjct: 16  FTSIPVNFFFVIIAVASIFSIMAFLCTSSKTKKSLTEKTSFLSKEKKVFSKLNSNISSKA 75

Query: 80  ISMAKMISWRKVEAADEERGSSDLSGEXXXXXXXVWRKTIIRGERCRPLEFSGKIDYDSD 138
           +S+ KM+SWRKV  ++ E         XXXX   VWRKTII+GERCRPL+FSGKI YDS 
Sbjct: 76  LSLVKMVSWRKVAGSEGE--XXXXXXXXXXXDEAVWRKTIIKGERCRPLDFSGKIVYDSQ 135

[Close]

BLAST of Cla97C05G093230 vs. NCBI nr
Match: XP_007033071.1 (PREDICTED: uncharacterized protein LOC18601915 [Theobroma cacao] >EOY03997.1 Uncharacterized protein TCM_019235 [Theobroma cacao])

HSP 1 Score: 104.8 bits (260), Expect = 2.5e-19
Identity = 64/127 (50.39%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 19  SFSSTNFSFLIASIAVLSIFALVIFLCTSSR-------KSNK---SQRRNFVSKMNSNIS 78
           SFS    +FL A ++V S+F++ +FLC S +       K+N+   S  R  +SKMNSN+ 
Sbjct: 16  SFSPVPVNFLFAILSVFSVFSITVFLCASHKNRGFQRQKNNEESMSSERKLLSKMNSNLG 75

Query: 79  SRAISMAKMISWRKVEAADEERGSSDLSGEXXXXXXXVWRKTIIRGERCRPLEFSGKIDY 136
           S+A  M KMISWRK +A +EE    D +G        VWRKTII GERCRPL+FSGKI Y
Sbjct: 76  SKAQLMVKMISWRKRQAEEEE----DYNGS----DEAVWRKTIIMGERCRPLDFSGKILY 134

[Close]

BLAST of Cla97C05G093230 vs. TrEMBL
Match: tr|A0A0A0L7R8|A0A0A0L7R8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.1e-38
Identity = 110/152 (72.37%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 1   MARFFPSISNPSHXXXXXSFSSTNFSFLIASIAV-LSIFALVIFLCTSSRKSNKSQ--RR 60
           MAR FP+ISN SH      F ST+FSFLI S +V LSIFAL+IFLCTSSRKSNKSQ  R 
Sbjct: 1   MARPFPTISNLSHPLHLL-FFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRN 60

Query: 61  NFVSKMNSNISSRAISMAKMISWRKVE------AADEERGSSDLSGEXXXXXXXVWRKTI 120
           NFVSKMNSNISSRAISMAKMISWRKVE                    XXXXXX VWRKTI
Sbjct: 61  NFVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTI 120

Query: 121 IRGERCRPLEFSGKIDYDSDGNLLSDSNREFK 144
           IRGERCRPLEFSGKIDYDSDGNLL DSNR+FK
Sbjct: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of Cla97C05G093230 vs. TrEMBL
Match: tr|V4S8Q0|V4S8Q0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013091mg PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.9e-21
Identity = 63/132 (47.73%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 20  FSSTNFSFLIASIAVLSIFALVIFLCTSSRK-------------SNKSQRRNFVSKMNSN 79
           F ST FS   A IAVLS+F+LV FLC S R+             S  S     ++K+NSN
Sbjct: 15  FRSTPFSLFFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSNEMRLLTKLNSN 74

Query: 80  ISSRAISMAKMISWRKVEAADEERGSSDLSGEXXXXXXXVWRKTIIRGERCRPLEFSGKI 139
           IS +A  + K+ISW+KV+  DE+  +             VWR+TI+RGERCRPL+FSGKI
Sbjct: 75  ISGKAHHLVKLISWKKVQVEDEDDDA-------------VWRRTIMRGERCRPLDFSGKI 133

[Close]

BLAST of Cla97C05G093230 vs. TrEMBL
Match: tr|A0A061EHV2|A0A061EHV2_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019235 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-19
Identity = 64/127 (50.39%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 19  SFSSTNFSFLIASIAVLSIFALVIFLCTSSR-------KSNK---SQRRNFVSKMNSNIS 78
           SFS    +FL A ++V S+F++ +FLC S +       K+N+   S  R  +SKMNSN+ 
Sbjct: 16  SFSPVPVNFLFAILSVFSVFSITVFLCASHKNRGFQRQKNNEESMSSERKLLSKMNSNLG 75

Query: 79  SRAISMAKMISWRKVEAADEERGSSDLSGEXXXXXXXVWRKTIIRGERCRPLEFSGKIDY 136
           S+A  M KMISWRK +A +EE    D +G        VWRKTII GERCRPL+FSGKI Y
Sbjct: 76  SKAQLMVKMISWRKRQAEEEE----DYNGS----DEAVWRKTIIMGERCRPLDFSGKILY 134

[Close]

BLAST of Cla97C05G093230 vs. TrEMBL
Match: tr|A0A2C9WM60|A0A2C9WM60_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G115600 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.8e-19
Identity = 58/120 (48.33%), Postives = 81/120 (67.50%), Query Frame = 0


Query: 26  SFLIASIAVLSIFALVIFLCTSSR-------KSNKSQRRNFVSKMNSNISSRAISMAKMI 85
           S L+  I V S+F++VIFLC+S +       K  +S  +  +SK+NS ISS+A SM KMI
Sbjct: 25  SSLVFVITVFSLFSIVIFLCSSHKTKKLDRAKDQESSEKKLLSKINSGISSKAHSMVKMI 84

Query: 86  SWRKVEAADEERGSSDLSGEXXXXXXXVWRKTIIRGERCRPLEFSGKIDYDSDGNLLSDS 139
           SWRK++ AD++    DL  +       +WRKTI++GERCRPL+FSGKI+YD+ GNL+  S
Sbjct: 85  SWRKMQQADDD----DL--DDYESEEAIWRKTIMKGERCRPLDFSGKIEYDAQGNLVPQS 138

[Close]

BLAST of Cla97C05G093230 vs. TrEMBL
Match: tr|A0A068U546|A0A068U546_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00040182001 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 61/135 (45.19%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 19  SFSSTNFSFLIASIAVLSIFALVIFLCTSSRKSNKSQR----------RNFVSKMNSNIS 78
           +F   + +FLI  IAVLSI ++V  LC S  + ++ +R          +  V+++ SN+S
Sbjct: 12  AFLPPSITFLIMPIAVLSILSVVALLCGSEARKSRWRRGEKTVRLGDNKKRVARLQSNLS 71

Query: 79  SRAISMAKMISWRKVEAADEERGSSDLSGEXXXXXXXVWRKTIIRGERCRPLEFSGKIDY 138
           S+A+ +AKMISWRKV    ++ G  D  G+       VWRKTII+GE+CRPL+FSGKI Y
Sbjct: 72  SKALLLAKMISWRKV----QDEGQEDEDGD--DDEEAVWRKTIIKGEKCRPLDFSGKILY 131

Query: 139 DSDGNLLSDSNREFK 144
           DSDGNL+ DS +  K
Sbjct: 132 DSDGNLIPDSPQPSK 140

[Close]

BLAST of Cla97C05G093230 vs. TAIR10
Match: AT1G49000.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 6.3e-04
Identity = 30/104 (28.85%), Postives = 49/104 (47.12%), Query Frame = 0


Query: 45  CTSSRKSNKSQRRNFVSKMNSN---------ISSRAISMA--KMISWRKVEAADEERGSS 104
           C+      +  R N +S   S+         +S++A++M   K     K  A +EE G  
Sbjct: 49  CSGGEGGGERFRWNMISSSMSSPRPKELFTTLSNKAMTMVRRKNPPEEKATAMEEEHG-- 108

Query: 105 DLSGEXXXXXXXVWRKTIIRGERCRPLEFSGKIDYDSDGNLLSD 138
                       +W++ I+ G +C PL+FSG I YDS+G LL++
Sbjct: 109 ------------LWQREILMGGKCEPLDFSGVIYYDSNGRLLNE 138

The following BLAST results are available for this feature:

BLAST of Cla97C05G093230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57848.1	3.2e-38	72.37	hypothetical protein Csa_3G348940 [Cucumis sativus]	[more]
XP_015386969.1	4.6e-21	48.48	uncharacterized protein LOC107177554 [Citrus sinensis]	[more]
XP_006430643.1	1.4e-20	47.73	uncharacterized protein LOC18037988 [Citrus clementina] >ESR43883.1 hypothetical...	[more]
XP_023899477.1	1.1e-19	52.38	uncharacterized protein LOC112011334 [Quercus suber]	[more]
XP_007033071.1	2.5e-19	50.39	PREDICTED: uncharacterized protein LOC18601915 [Theobroma cacao] >EOY03997.1 Unc...	[more]

BLAST of Cla97C05G093230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7R8\|A0A0A0L7R8_CUCSA	2.1e-38	72.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1	[more]
tr\|V4S8Q0\|V4S8Q0_9ROSI	8.9e-21	47.73	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013091mg PE=4 ...	[more]
tr\|A0A061EHV2\|A0A061EHV2_THECC	1.7e-19	50.39	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019235 PE=4 SV=1	[more]
tr\|A0A2C9WM60\|A0A2C9WM60_MANES	3.8e-19	48.33	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G115600 PE=4 SV=...	[more]
tr\|A0A068U546\|A0A068U546_COFCA	1.4e-18	45.19	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00040182001 PE=4 ...	[more]

BLAST of Cla97C05G093230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G093230 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49000.1	6.3e-04	28.85	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G093230.1	Cla97C05G093230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..143
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 15..139
None	No IPR available	PANTHER	PTHR33237:SF10	SUBFAMILY NOT NAMED	coord: 15..139

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G093230	Cla013168	Watermelon (97103) v1	wmwmbB206
Cla97C05G093230	Csa3G348940	Cucumber (Chinese Long) v2	cuwmbB218
Cla97C05G093230	MELO3C020292	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G093230	ClCG05G010930	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G093230	CSPI03G21890	Wild cucumber (PI 183967)	cpiwmbB224
Cla97C05G093230	Cucsa.012700	Cucumber (Gy14) v1	cgywmbB351
Cla97C05G093230	CmaCh01G003560	Cucurbita maxima (Rimu)	cmawmbB473
Cla97C05G093230	CmoCh01G003720	Cucurbita moschata (Rifu)	cmowmbB454
Cla97C05G093230	MELO3C020292.2	Melon (DHL92) v3.6.1	medwmbB424
Cla97C05G093230	Carg07443	Silver-seed gourd	carwmbB0795
Cla97C05G093230	CsaV3_3G021650	Cucumber (Chinese Long) v3	cucwmbB220
Cla97C05G093230	Bhi01G001347	Wax gourd	wgowmbB179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G093230	Silver-seed gourd	carwmbB0181
Cla97C05G093230	Cucumber (Gy14) v2	cgybwmbB209
Cla97C05G093230	Cucurbita maxima (Rimu)	cmawmbB264
Cla97C05G093230	Cucurbita moschata (Rifu)	cmowmbB244
Cla97C05G093230	Bottle gourd (USVL1VR-Ls)	lsiwmbB329