CmoCh01G003720 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G003720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane protein, putative
Location	Cmo_Chr01 : 1810561 .. 1810998 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGCCGTTCCCAAGCTTTTCAAATCACTCTTATCATCTTCCATTTTCCTCACCATCGCTCGTCGCTTCAATCGCAGTGCTCTCTATCTTCGCGCTCGTGATTTTCCTCTGCACTTCCTCGAGAAAATCGAAGAAACCGAACCTGTTGCAGCAGAGAAACTTTGTGGCGAAGGTTAACAGTAACATCAGTTCTCGAGCGATTTCCATCGCGAAGATGATTTCGTGGCGGAAAGTCGAGGCGGCGGATGAAGATGAAGGAGGAGGAGGAGGAGGTTTTGATTTGAGTGGAGATGATTATGATGATGAGGTTTGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGTCCGCTTGAATTTTCAGGCAAAATTGATTATGATTCTGATGGTAATTTGTTGTGTGATTCGAAGAGGGAGTTTAAATCCGTTGGATAA

mRNA sequence

ATGGCCAAGCCGTTCCCAAGCTTTTCAAATCACTCTTATCATCTTCCATTTTCCTCACCATCGCTCGTCGCTTCAATCGCAGTGCTCTCTATCTTCGCGCTCGTGATTTTCCTCTGCACTTCCTCGAGAAAATCGAAGAAACCGAACCTGTTGCAGCAGAGAAACTTTGTGGCGAAGGTTAACAGTAACATCAGTTCTCGAGCGATTTCCATCGCGAAGATGATTTCGTGGCGGAAAGTCGAGGCGGCGGATGAAGATGAAGGAGGAGGAGGAGGAGGTTTTGATTTGAGTGGAGATGATTATGATGATGAGGTTTGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGTCCGCTTGAATTTTCAGGCAAAATTGATTATGATTCTGATGGTAATTTGTTGTGTGATTCGAAGAGGGAGTTTAAATCCGTTGGATAA

Coding sequence (CDS)

ATGGCCAAGCCGTTCCCAAGCTTTTCAAATCACTCTTATCATCTTCCATTTTCCTCACCATCGCTCGTCGCTTCAATCGCAGTGCTCTCTATCTTCGCGCTCGTGATTTTCCTCTGCACTTCCTCGAGAAAATCGAAGAAACCGAACCTGTTGCAGCAGAGAAACTTTGTGGCGAAGGTTAACAGTAACATCAGTTCTCGAGCGATTTCCATCGCGAAGATGATTTCGTGGCGGAAAGTCGAGGCGGCGGATGAAGATGAAGGAGGAGGAGGAGGAGGTTTTGATTTGAGTGGAGATGATTATGATGATGAGGTTTGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGTCCGCTTGAATTTTCAGGCAAAATTGATTATGATTCTGATGGTAATTTGTTGTGTGATTCGAAGAGGGAGTTTAAATCCGTTGGATAA

Homology

[Close]

BLAST of CmoCh01G003720 vs. TrEMBL
Match: A0A0A0L7R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 8.6e-42
Identity = 99/152 (65.13%), Postives = 116/152 (76.32%), Query Frame = 1


Query: 1   MAKPFPSFSN--HSYHLPFSSPS----LVASIAVLSIFALVIFLCTSSRKSKKPNLLQQR 60
           MA+PFP+ SN  H  HL F S      ++++  +LSIFAL+IFLCTSSRKS K     + 
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQ-GRN 60

Query: 61  NFVAKVNSNISSRAISIAKMISWRKVEAADEDEGG----GGGGFDLSGDDYDDEVWRKTI 120
           NFV+K+NSNISSRAIS+AKMISWRKVEAA+E+E      G GG D    D ++EVWRKTI
Sbjct: 61  NFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTI 120

Query: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSKREFK 143
           IRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Sbjct: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of CmoCh01G003720 vs. TrEMBL
Match: A0A059BTL4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.9e-22
Identity = 57/124 (45.97%), Postives = 83/124 (66.94%), Query Frame = 1


Query: 18  SSPSLVASIAVLSIFALVIFLCTSSRKSKKPNL-------LQQRNFVAKVNSNISSRAIS 77
           S  S+   I++LSI +++ FLC S RKSKK            ++  V+++NS+ISS+A+ 
Sbjct: 23  SLTSIFLLISILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSKALL 82

Query: 78  IAKMISWRKVEAADEDEGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSD 135
           +AKM+SWRK E   E+E          G+D D+ +W+KTII+GERCRPL+FSGKI+YDS 
Sbjct: 83  MAKMMSWRKTEGGQEEE---------DGEDSDEAIWKKTIIQGERCRPLDFSGKIEYDSK 137

[Close]

BLAST of CmoCh01G003720 vs. TrEMBL
Match: A0A068U546_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040182001 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.9e-22
Identity = 70/135 (51.85%), Postives = 89/135 (65.93%), Query Frame = 1


Query: 15  LPFSSPSLVASIAVLSIFALVIFLCTS-SRKS------KKPNLLQQRNFVAKVNSNISSR 74
           LP S   L+  IAVLSI ++V  LC S +RKS      K   L   +  VA++ SN+SS+
Sbjct: 14  LPPSITFLIMPIAVLSILSVVALLCGSEARKSRWRRGEKTVRLGDNKKRVARLQSNLSSK 73

Query: 75  AISIAKMISWRKVEAADEDEGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDY 134
           A+ +AKMISWRKV+    DEG      D  GDD ++ VWRKTII+GE+CRPL+FSGKI Y
Sbjct: 74  ALLLAKMISWRKVQ----DEGQE----DEDGDDDEEAVWRKTIIKGEKCRPLDFSGKILY 133

Query: 135 DSDGNLLCDSKREFK 143
           DSDGNL+ DS +  K
Sbjct: 134 DSDGNLIPDSPQPSK 140

[Close]

BLAST of CmoCh01G003720 vs. TrEMBL
Match: U5FKC5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03010g PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.9e-22
Identity = 63/146 (43.15%), Postives = 89/146 (60.96%), Query Frame = 1


Query: 1   MAKPFPSFSNHSYHLPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQ-------- 60
           MA+P  +  NHS+       + +A IAVLS+F+LV FLC S  K++K             
Sbjct: 1   MARPLLAMQNHSFLSNIPVSNFIAFIAVLSVFSLVTFLCASHHKARKSQRQGDEESVISH 60

Query: 61  --QRNFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGFDLSGDDYDDEVWRKTI 120
             ++  ++K+NS+I  +A S+ KMISWRK+E  DED        D   DD  +E+WR++I
Sbjct: 61  SGEKRLLSKINSDIREKAHSMVKMISWRKLEQ-DED-------CDEDCDDGSEEIWRRSI 120

Query: 121 IRGERCRPLEFSGKIDYDSDGNLLCD 137
           + GERCRPL+FSGKI YD +GNL+ D
Sbjct: 121 VMGERCRPLDFSGKIMYDCEGNLIPD 138

[Close]

BLAST of CmoCh01G003720 vs. TrEMBL
Match: V4S8Q0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013091mg PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-21
Identity = 65/132 (49.24%), Postives = 83/132 (62.88%), Query Frame = 1


Query: 16  PFSSPSLVASIAVLSIFALVIFLCTSSRKSK------KPNLLQQRN----FVAKVNSNIS 75
           PFS     A IAVLS+F+LV FLC S R++K      K  +  Q +     + K+NSNIS
Sbjct: 19  PFSL--FFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSNEMRLLTKLNSNIS 78

Query: 76  SRAISIAKMISWRKVEAADEDEGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKI 135
            +A  + K+ISW+KV+  DED               DD VWR+TI+RGERCRPL+FSGKI
Sbjct: 79  GKAHHLVKLISWKKVQVEDED---------------DDAVWRRTIMRGERCRPLDFSGKI 133

Query: 136 DYDSDGNLLCDS 138
           +YDS+GNLL DS
Sbjct: 139 EYDSEGNLLPDS 133

[Close]

BLAST of CmoCh01G003720 vs. NCBI nr
Match: gi|700202715|gb|KGN57848.1| (hypothetical protein Csa_3G348940 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-41
Identity = 99/152 (65.13%), Postives = 116/152 (76.32%), Query Frame = 1


Query: 1   MAKPFPSFSN--HSYHLPFSSPS----LVASIAVLSIFALVIFLCTSSRKSKKPNLLQQR 60
           MA+PFP+ SN  H  HL F S      ++++  +LSIFAL+IFLCTSSRKS K     + 
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQ-GRN 60

Query: 61  NFVAKVNSNISSRAISIAKMISWRKVEAADEDEGG----GGGGFDLSGDDYDDEVWRKTI 120
           NFV+K+NSNISSRAIS+AKMISWRKVEAA+E+E      G GG D    D ++EVWRKTI
Sbjct: 61  NFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTI 120

Query: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSKREFK 143
           IRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Sbjct: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of CmoCh01G003720 vs. NCBI nr
Match: gi|985454016|ref|XP_015386969.1| (PREDICTED: uncharacterized protein LOC107177554 [Citrus sinensis])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 66/132 (50.00%), Postives = 84/132 (63.64%), Query Frame = 1


Query: 16  PFSSPSLVASIAVLSIFALVIFLCTSSRKSK------KPNLLQQRN----FVAKVNSNIS 75
           PFS   L A IAVLS+F+LV FLC S R++K      K  +  Q +     + K+NSNIS
Sbjct: 19  PFSL--LFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSSEMRLLTKLNSNIS 78

Query: 76  SRAISIAKMISWRKVEAADEDEGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKI 135
            +A  + K+ISW+KV+  DED               DD VWR+TI+RGERCRPL+FSGKI
Sbjct: 79  GKAHHLVKLISWKKVQVEDED---------------DDAVWRRTIMRGERCRPLDFSGKI 133

Query: 136 DYDSDGNLLCDS 138
           +YDS+GNLL DS
Sbjct: 139 EYDSEGNLLPDS 133

[Close]

BLAST of CmoCh01G003720 vs. NCBI nr
Match: gi|702386718|ref|XP_010064833.1| (PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 57/124 (45.97%), Postives = 83/124 (66.94%), Query Frame = 1


Query: 18  SSPSLVASIAVLSIFALVIFLCTSSRKSKKPNL-------LQQRNFVAKVNSNISSRAIS 77
           S  S+   I++LSI +++ FLC S RKSKK            ++  V+++NS+ISS+A+ 
Sbjct: 23  SLTSIFLLISILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSKALL 82

Query: 78  IAKMISWRKVEAADEDEGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSD 135
           +AKM+SWRK E   E+E          G+D D+ +W+KTII+GERCRPL+FSGKI+YDS 
Sbjct: 83  MAKMMSWRKTEGGQEEE---------DGEDSDEAIWKKTIIQGERCRPLDFSGKIEYDSK 137

[Close]

BLAST of CmoCh01G003720 vs. NCBI nr
Match: gi|566211031|ref|XP_006372589.1| (hypothetical protein POPTR_0017s03010g [Populus trichocarpa])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 63/146 (43.15%), Postives = 89/146 (60.96%), Query Frame = 1


Query: 1   MAKPFPSFSNHSYHLPFSSPSLVASIAVLSIFALVIFLCTSSRKSKKPNLLQ-------- 60
           MA+P  +  NHS+       + +A IAVLS+F+LV FLC S  K++K             
Sbjct: 1   MARPLLAMQNHSFLSNIPVSNFIAFIAVLSVFSLVTFLCASHHKARKSQRQGDEESVISH 60

Query: 61  --QRNFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGFDLSGDDYDDEVWRKTI 120
             ++  ++K+NS+I  +A S+ KMISWRK+E  DED        D   DD  +E+WR++I
Sbjct: 61  SGEKRLLSKINSDIREKAHSMVKMISWRKLEQ-DED-------CDEDCDDGSEEIWRRSI 120

Query: 121 IRGERCRPLEFSGKIDYDSDGNLLCD 137
           + GERCRPL+FSGKI YD +GNL+ D
Sbjct: 121 VMGERCRPLDFSGKIMYDCEGNLIPD 138

[Close]

BLAST of CmoCh01G003720 vs. NCBI nr
Match: gi|661894272|emb|CDP02713.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 70/135 (51.85%), Postives = 89/135 (65.93%), Query Frame = 1


Query: 15  LPFSSPSLVASIAVLSIFALVIFLCTS-SRKS------KKPNLLQQRNFVAKVNSNISSR 74
           LP S   L+  IAVLSI ++V  LC S +RKS      K   L   +  VA++ SN+SS+
Sbjct: 14  LPPSITFLIMPIAVLSILSVVALLCGSEARKSRWRRGEKTVRLGDNKKRVARLQSNLSSK 73

Query: 75  AISIAKMISWRKVEAADEDEGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDY 134
           A+ +AKMISWRKV+    DEG      D  GDD ++ VWRKTII+GE+CRPL+FSGKI Y
Sbjct: 74  ALLLAKMISWRKVQ----DEGQE----DEDGDDDEEAVWRKTIIKGEKCRPLDFSGKILY 133

Query: 135 DSDGNLLCDSKREFK 143
           DSDGNL+ DS +  K
Sbjct: 134 DSDGNLIPDSPQPSK 140

The following BLAST results are available for this feature:

BLAST of CmoCh01G003720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G003720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7R8_CUCSA	8.6e-42	65.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1	[more]
A0A059BTL4_EUCGR	9.9e-22	45.97	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1	[more]
A0A068U546_COFCA	9.9e-22	51.85	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040182001 PE=4 SV=1	[more]
U5FKC5_POPTR	9.9e-22	43.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03010g PE=4 SV=1	[more]
V4S8Q0_9ROSI	2.2e-21	49.24	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013091mg PE=4 SV=1	[more]

BLAST of CmoCh01G003720 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G003720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202715\|gb\|KGN57848.1\|	1.2e-41	65.13	hypothetical protein Csa_3G348940 [Cucumis sativus]	[more]
gi\|985454016\|ref\|XP_015386969.1\|	1.1e-21	50.00	PREDICTED: uncharacterized protein LOC107177554 [Citrus sinensis]	[more]
gi\|702386718\|ref\|XP_010064833.1\|	1.4e-21	45.97	PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis]	[more]
gi\|566211031\|ref\|XP_006372589.1\|	1.4e-21	43.15	hypothetical protein POPTR_0017s03010g [Populus trichocarpa]	[more]
gi\|661894272\|emb\|CDP02713.1\|	1.4e-21	51.85	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G003720.1	CmoCh01G003720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 1..140 score: 4.6
None	No IPR available	PANTHER	PTHR33237:SF10	SUBFAMILY NOT NAMED	coord: 1..140 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G003720	Cucsa.012700	Cucumber (Gy14) v1	cgycmoB0552
CmoCh01G003720	CmaCh01G003560	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G003720	Cla013168	Watermelon (97103) v1	cmowmB427
CmoCh01G003720	Csa3G348940	Cucumber (Chinese Long) v2	cmocuB442
CmoCh01G003720	MELO3C020292	Melon (DHL92) v3.5.1	cmomeB421
CmoCh01G003720	ClCG05G010930	Watermelon (Charleston Gray)	cmowcgB406
CmoCh01G003720	CSPI03G21890	Wild cucumber (PI 183967)	cmocpiB446
CmoCh01G003720	Cp4.1LG02g16800	Cucurbita pepo (Zucchini)	cmocpeB449
CmoCh01G003720	MELO3C020292.2	Melon (DHL92) v3.6.1	cmomedB483
CmoCh01G003720	CsaV3_3G021650	Cucumber (Chinese Long) v3	cmocucB0532
CmoCh01G003720	Cla97C05G093230	Watermelon (97103) v2	cmowmbB454
CmoCh01G003720	Bhi01G001347	Wax gourd	cmowgoB0556
CmoCh01G003720	Carg07443	Silver-seed gourd	carcmoB1033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G003720	Silver-seed gourd	carcmoB0249
CmoCh01G003720	Cucurbita moschata (Rifu)	cmocmoB203
CmoCh01G003720	Cucurbita maxima (Rimu)	cmacmoB257
CmoCh01G003720	Cucurbita pepo (Zucchini)	cmocpeB453
CmoCh01G003720	Bottle gourd (USVL1VR-Ls)	cmolsiB430
CmoCh01G003720	Cucumber (Gy14) v2	cgybcmoB339