CsaV3_3G021650 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G021650
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Olfactory receptor 4C13 like
Location	chr3 : 18761899 .. 18762638 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCGAATCGCTGGGGATAAATTGAGTGGGAGCAAAAAAACCTCTACAACACACACCTTCCCAATTCGCTTCACACAAGATCACCATTTTTCTCTCTTCTTCTTCCCTCCGCCCCATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAATAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAATCTGATTCTTCTTTTTCTCCTGCGCTCTTTCTAATTCTTCAAATAATCTGACTTTAAATAACCCTGAAAACGTACAAACATCAATAGAAATGTTTACATCAAAATTTAGTACTATGAACATATGTAATTTAGTATAAATATACGCATGCTAGGGATTTTTTTCACAAAA

mRNA sequence

ATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAATAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAA

Coding sequence (CDS)

ATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAATAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAA

Protein sequence

MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK

Homology

[Close]

BLAST of CsaV3_3G021650 vs. NCBI nr
Match: KGN57848.1 (hypothetical protein Csa_3G348940 [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 3.0e-58
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
           MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60

Query: 61  FVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTII 120
           FVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 152
           RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of CsaV3_3G021650 vs. NCBI nr
Match: XP_007217346.2 (uncharacterized protein LOC18783089 [Prunus persica])

HSP 1 Score: 104.4 bits (259), Expect = 3.5e-19
Identity = 86/158 (54.43%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 1   MARPF-PTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRN 60
           MARP  P+ S  SH  HL    +HF F ++   V  S+F+L+IFLCT SRKS KS + + 
Sbjct: 1   MARPLAPSFSMASH--HLFQHQSHFLFALI---VFFSMFSLVIFLCT-SRKSKKSHEKKE 60

Query: 61  -----------NFVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXX 120
                       F++K+NS ISS+A++MAKM+SWRK+E           XXXXXXXXXXX
Sbjct: 61  EAITNSESKDVKFIAKLNSKISSKALAMAKMVSWRKME---------AGXXXXXXXXXXX 120

Query: 121 XXXXEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 147
           XXXX VWRK+II GERC PL FSGKIDYDSDGNL  +S
Sbjct: 121 XXXXAVWRKSIIMGERCAPLNFSGKIDYDSDGNLQPES 143

[Close]

BLAST of CsaV3_3G021650 vs. NCBI nr
Match: PQM43042.1 (uncharacterized protein Pyn_17678 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 99.8 bits (247), Expect = 8.7e-18
Identity = 83/158 (52.53%), Postives = 103/158 (65.19%), Query Frame = 0


Query: 1   MARPF-PTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRN 60
           MARP  P+ S  SH  HL    +HF F ++   V  S+F+LLIFLC +S KS KS + + 
Sbjct: 96  MARPLAPSFSMASH--HLFQHPSHFLFALV---VFFSMFSLLIFLC-ASHKSKKSHEKKE 155

Query: 61  -----------NFVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXX 120
                       F++K+NS ISS+A++MAKM+SWRK+E            XXXXXXXXXX
Sbjct: 156 EAITNSESKDVKFIAKLNSKISSKALAMAKMVSWRKME--------AGEEXXXXXXXXXX 215

Query: 121 XXXXEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 147
           XXXX VWRK+II GERC PL FSGKIDYDS+GNL  +S
Sbjct: 216 XXXXXVWRKSIIMGERCAPLNFSGKIDYDSEGNLQPES 239

[Close]

BLAST of CsaV3_3G021650 vs. NCBI nr
Match: XP_023899477.1 (uncharacterized protein LOC112011334 [Quercus suber])

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 80/155 (51.61%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 1   MARPFPTISNLSHPLHLLFFST---HFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQG 60
           MARP       S P+H L+F++   +F F+I++   + SIF+++ FLCTSS K+ KS   
Sbjct: 1   MARPLIP----SLPIHNLWFTSIPVNFFFVIIA---VASIFSIMAFLCTSS-KTKKSLTE 60

Query: 61  RNNFV-------SKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXXX 120
           + +F+       SK+NSNISS+A+S+ KM+SWRKV              XXXXXXXXXXX
Sbjct: 61  KTSFLSKEKKVFSKLNSNISSKALSLVKMVSWRKV--------AGSEGEXXXXXXXXXXX 120

Query: 121 XXEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCD 146
              VWRKTII+GERCRPL+FSGKI YDS GNLL D
Sbjct: 121 DEAVWRKTIIKGERCRPLDFSGKIVYDSQGNLLPD 139

[Close]

BLAST of CsaV3_3G021650 vs. NCBI nr
Match: POE51937.1 (hypothetical protein CFP56_77054 [Quercus suber])

HSP 1 Score: 94.0 bits (232), Expect = 4.8e-16
Identity = 68/119 (57.14%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 34  ILSIFALLIFLCTSSRKSNKSQQGRNNFV-------SKMNSNISSRAISMAKMISWRKVE 93
           + SIF+++ FLCTSS K+ KS   + +F+       SK+NSNISS+A+S+ KM+SWRKV 
Sbjct: 143 VASIFSIMAFLCTSS-KTKKSLTEKTSFLSKEKKVFSKLNSNISSKALSLVKMVSWRKV- 202

Query: 94  XXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCD 146
                        XXXXXXXXXXX   VWRKTII+GERCRPL+FSGKI YDS GNLL D
Sbjct: 203 -------AGSEGEXXXXXXXXXXXDEAVWRKTIIKGERCRPLDFSGKIVYDSQGNLLPD 252

[Close]

BLAST of CsaV3_3G021650 vs. TAIR10
Match: AT1G49000.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 3.0e-04
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 0


Query: 114 VWRKTIIRGERCRPLEFSGKIDYDSDGNLL 144
           +W++ I+ G +C PL+FSG I YDS+G LL
Sbjct: 107 LWQREILMGGKCEPLDFSGVIYYDSNGRLL 136

[Close]

BLAST of CsaV3_3G021650 vs. TrEMBL
Match: tr|A0A0A0L7R8|A0A0A0L7R8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.0e-58
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
           MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60

Query: 61  FVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTII 120
           FVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 152
           RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of CsaV3_3G021650 vs. TrEMBL
Match: tr|A0A2P4H6T2|A0A2P4H6T2_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_77054 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.2e-16
Identity = 68/119 (57.14%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 34  ILSIFALLIFLCTSSRKSNKSQQGRNNFV-------SKMNSNISSRAISMAKMISWRKVE 93
           + SIF+++ FLCTSS K+ KS   + +F+       SK+NSNISS+A+S+ KM+SWRKV 
Sbjct: 143 VASIFSIMAFLCTSS-KTKKSLTEKTSFLSKEKKVFSKLNSNISSKALSLVKMVSWRKV- 202

Query: 94  XXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCD 146
                        XXXXXXXXXXX   VWRKTII+GERCRPL+FSGKI YDS GNLL D
Sbjct: 203 -------AGSEGEXXXXXXXXXXXDEAVWRKTIIKGERCRPLDFSGKIVYDSQGNLLPD 252

[Close]

BLAST of CsaV3_3G021650 vs. TrEMBL
Match: tr|V4S8Q0|V4S8Q0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013091mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.0e-15
Identity = 57/142 (40.14%), Postives = 79/142 (55.63%), Query Frame = 0


Query: 16  HLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRN-----------NFVSK 75
           +L F ST FS L  +   +LS+F+L+ FLC S R++  S +                ++K
Sbjct: 12  NLQFRSTPFS-LFFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSNEMRLLTK 71

Query: 76  MNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXXXXXEVWRKTIIRGER 135
           +NSNIS +A  + K+ISW+KV+                           VWR+TI+RGER
Sbjct: 72  LNSNISGKAHHLVKLISWKKVQ-------------------VEDEDDDAVWRRTIMRGER 131

Query: 136 CRPLEFSGKIDYDSDGNLLCDS 147
           CRPL+FSGKI+YDS+GNLL DS
Sbjct: 132 CRPLDFSGKIEYDSEGNLLPDS 133

[Close]

BLAST of CsaV3_3G021650 vs. TrEMBL
Match: tr|U5FKC5|U5FKC5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G128700v3 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 0


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQ---- 60
           MARP   + N S  L  +  S   +F+      +LS+F+L+ FLC S  K+ KSQ+    
Sbjct: 1   MARPLLAMQNHSF-LSNIPVSNFIAFI-----AVLSVFSLVTFLCASHHKARKSQRQGDE 60

Query: 61  -------GRNNFVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXX 120
                  G    +SK+NS+I  +A SM KMISWRK+E                 XXXXXX
Sbjct: 61  ESVISHSGEKRLLSKINSDIREKAHSMVKMISWRKLE------------QDEDCXXXXXX 120

Query: 121 XXXEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCD 146
           X  E+WR++I+ GERCRPL+FSGKI YD +GNL+ D
Sbjct: 121 XSEEIWRRSIVMGERCRPLDFSGKIMYDCEGNLIPD 138

[Close]

BLAST of CsaV3_3G021650 vs. TrEMBL
Match: tr|B9H395|B9H395_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G088300v3 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.1e-14
Identity = 58/159 (36.48%), Postives = 82/159 (51.57%), Query Frame = 0


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRN- 60
           MARP   +S  +H     F S       L+   IL++F+L+ FLC S  K+ KS + ++ 
Sbjct: 1   MARPLLALSTQNHS----FLSKTPISYFLAFVAILTVFSLVTFLCASHHKAKKSHRQKDE 60

Query: 61  ----------NFVSKMNSNISSRAISMAKMISWRKVEXXXXXXXXXXXXXXXXXXXXXXX 120
                       +SK+NS+I  +A SM KMISWRK+                        
Sbjct: 61  ERVTSHSSEKKLLSKINSDIKEKAHSMVKMISWRKL-------------------AQDED 120

Query: 121 XXXEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSNR 149
              E+WR++II GERCRP++FSGKI YD +GNL+ DS +
Sbjct: 121 GDEEIWRRSIIMGERCRPIDFSGKIMYDCEGNLIPDSTQ 136

The following BLAST results are available for this feature:

BLAST of CsaV3_3G021650 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57848.1	3.0e-58	100.00	hypothetical protein Csa_3G348940 [Cucumis sativus]	[more]
XP_007217346.2	3.5e-19	54.43	uncharacterized protein LOC18783089 [Prunus persica]	[more]
PQM43042.1	8.7e-18	52.53	uncharacterized protein Pyn_17678 [Prunus yedoensis var. nudiflora]	[more]
XP_023899477.1	2.5e-17	51.61	uncharacterized protein LOC112011334 [Quercus suber]	[more]
POE51937.1	4.8e-16	57.14	hypothetical protein CFP56_77054 [Quercus suber]	[more]

BLAST of CsaV3_3G021650 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49000.1	3.0e-04	53.33	unknown protein	[more]

BLAST of CsaV3_3G021650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G021650 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7R8\|A0A0A0L7R8_CUCSA	2.0e-58	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1	[more]
tr\|A0A2P4H6T2\|A0A2P4H6T2_QUESU	3.2e-16	57.14	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_77054 PE=4 SV=1	[more]
tr\|V4S8Q0\|V4S8Q0_9ROSI	6.0e-15	40.14	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013091mg PE=4 ...	[more]
tr\|U5FKC5\|U5FKC5_POPTR	1.7e-14	42.95	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G128700v3 PE=...	[more]
tr\|B9H395\|B9H395_POPTR	5.1e-14	36.48	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G088300v3 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G021650.1	CsaV3_3G021650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..105
None	No IPR available	PANTHER	PTHR33237:SF10	SUBFAMILY NOT NAMED	coord: 24..147
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 24..147

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G021650	CSPI03G21890	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G021650	Cucsa.012700	Cucumber (Gy14) v1	cgycucB303
CsaV3_3G021650	CmaCh01G003560	Cucurbita maxima (Rimu)	cmacucB0547
CsaV3_3G021650	CmoCh01G003720	Cucurbita moschata (Rifu)	cmocucB0532
CsaV3_3G021650	Cp4.1LG02g16800	Cucurbita pepo (Zucchini)	cpecucB0686
CsaV3_3G021650	Carg07443	Silver-seed gourd	carcucB0801
CsaV3_3G021650	Cla013168	Watermelon (97103) v1	cucwmB254
CsaV3_3G021650	MELO3C020292	Melon (DHL92) v3.5.1	cucmeB249
CsaV3_3G021650	ClCG05G010930	Watermelon (Charleston Gray)	cucwcgB241
CsaV3_3G021650	MELO3C020292.2	Melon (DHL92) v3.6.1	cucmedB247
CsaV3_3G021650	Cla97C05G093230	Watermelon (97103) v2	cucwmbB220
CsaV3_3G021650	Bhi01G001347	Wax gourd	cucwgoB296

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G021650	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G021650	Cucurbita maxima (Rimu)	cmacucB0281
CsaV3_3G021650	Cucurbita moschata (Rifu)	cmocucB0272
CsaV3_3G021650	Cucurbita pepo (Zucchini)	cpecucB0749
CsaV3_3G021650	Bottle gourd (USVL1VR-Ls)	cuclsiB231