CmaCh01G003560 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G003560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Chromosome 3B, genomic scaffold, cultivar Chinese Spring
Location	Cma_Chr01 : 1763186 .. 1763644 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGGTCGTTCCCAAGCTTTTCGAATCACTCTTATCATCTTCCATTTTCCTCAACATCGCTCATCGCTTCAATCGCAGTGCTCTCCATCTTCGCGCTCGTGATTTTCCTCTGCACTTCCTCGAGAAAATCGAAGAAACCGAACCTGTTTCAGCAGAGGAACTTTGTGGCGAAGGTTAACAGTAACATCAGTTCTCGAGCGATTTCCATCGCGAAGATGATTTCGTGGAGGAAAGTCGAGGCGGCGGATGAAGATGAAGGAGGAGGAGGAGGAGGAGGAGGTTTTGATTTGAGTGGAGATGATTATGATGATGAGGTTTGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGTCCGCTTGAATTTTCAGGCAAAATTGATTATGATTCTGATGGTAATTTGTTGTGTGATTCGAAGAGGGAGTTTAAATCCGTTGGAAGAGGATTTCGCGGTTAA

mRNA sequence

ATGGCTAGGTCGTTCCCAAGCTTTTCGAATCACTCTTATCATCTTCCATTTTCCTCAACATCGCTCATCGCTTCAATCGCAGTGCTCTCCATCTTCGCGCTCGTGATTTTCCTCTGCACTTCCTCGAGAAAATCGAAGAAACCGAACCTGTTTCAGCAGAGGAACTTTGTGGCGAAGGTTAACAGTAACATCAGTTCTCGAGCGATTTCCATCGCGAAGATGATTTCGTGGAGGAAAGTCGAGGCGGCGGATGAAGATGAAGGAGGAGGAGGAGGAGGAGGAGGTTTTGATTTGAGTGGAGATGATTATGATGATGAGGTTTGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGTCCGCTTGAATTTTCAGGCAAAATTGATTATGATTCTGATGGTAATTTGTTGTGTGATTCGAAGAGGGAGTTTAAATCCGTTGGAAGAGGATTTCGCGGTTAA

Coding sequence (CDS)

ATGGCTAGGTCGTTCCCAAGCTTTTCGAATCACTCTTATCATCTTCCATTTTCCTCAACATCGCTCATCGCTTCAATCGCAGTGCTCTCCATCTTCGCGCTCGTGATTTTCCTCTGCACTTCCTCGAGAAAATCGAAGAAACCGAACCTGTTTCAGCAGAGGAACTTTGTGGCGAAGGTTAACAGTAACATCAGTTCTCGAGCGATTTCCATCGCGAAGATGATTTCGTGGAGGAAAGTCGAGGCGGCGGATGAAGATGAAGGAGGAGGAGGAGGAGGAGGAGGTTTTGATTTGAGTGGAGATGATTATGATGATGAGGTTTGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGTCCGCTTGAATTTTCAGGCAAAATTGATTATGATTCTGATGGTAATTTGTTGTGTGATTCGAAGAGGGAGTTTAAATCCGTTGGAAGAGGATTTCGCGGTTAA

Protein sequence

MARSFPSFSNHSYHLPFSSTSLIASIAVLSIFALVIFLCTSSRKSKKPNLFQQRNFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFKSVGRGFRG

Homology

[Close]

BLAST of CmaCh01G003560 vs. TrEMBL
Match: A0A0A0L7R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.8e-41
Identity = 100/152 (65.79%), Postives = 116/152 (76.32%), Query Frame = 1


Query: 1   MARSFPSFSN--HSYHLPFSSTS----LIASIAVLSIFALVIFLCTSSRKSKKPNLFQQR 60
           MAR FP+ SN  H  HL F ST     ++++  +LSIFAL+IFLCTSSRKS K     + 
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQ-GRN 60

Query: 61  NFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGG--GGGGFDLSGDDYDDEVWRKTI 120
           NFV+K+NSNISSRAIS+AKMISWRKVEAA+E+E      G GG D    D ++EVWRKTI
Sbjct: 61  NFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTI 120

Query: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSKREFK 145
           IRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Sbjct: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of CmaCh01G003560 vs. TrEMBL
Match: A0A059BTL4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-22
Identity = 58/126 (46.03%), Postives = 84/126 (66.67%), Query Frame = 1


Query: 18  SSTSLIASIAVLSIFALVIFLCTSSRKSKKPNLFQ-------QRNFVAKVNSNISSRAIS 77
           S TS+   I++LSI +++ FLC S RKSKK            ++  V+++NS+ISS+A+ 
Sbjct: 23  SLTSIFLLISILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSKALL 82

Query: 78  IAKMISWRKVEAADEDEGGGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYD 137
           +AKM+SWRK E   E+E            G+D D+ +W+KTII+GERCRPL+FSGKI+YD
Sbjct: 83  MAKMMSWRKTEGGQEEE-----------DGEDSDEAIWKKTIIQGERCRPLDFSGKIEYD 137

[Close]

BLAST of CmaCh01G003560 vs. TrEMBL
Match: A0A068U546_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040182001 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.7e-22
Identity = 75/151 (49.67%), Postives = 96/151 (63.58%), Query Frame = 1


Query: 1   MARSFPSFSNHSYHLPFSSTSLIASIAVLSIFALVIFLCTS-SRKS------KKPNLFQQ 60
           M R+   F   ++ LP S T LI  IAVLSI ++V  LC S +RKS      K   L   
Sbjct: 1   MVRTIFPFHKPAF-LPPSITFLIMPIAVLSILSVVALLCGSEARKSRWRRGEKTVRLGDN 60

Query: 61  RNFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGFDLSGDDYDDEVWRKTII 120
           +  VA++ SN+SS+A+ +AKMISWRKV+    DEG        D  GDD ++ VWRKTII
Sbjct: 61  KKRVARLQSNLSSKALLLAKMISWRKVQ----DEGQE------DEDGDDDEEAVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSKREFK 145
           +GE+CRPL+FSGKI YDSDGNL+ DS +  K
Sbjct: 121 KGEKCRPLDFSGKILYDSDGNLIPDSPQPSK 140

[Close]

BLAST of CmaCh01G003560 vs. TrEMBL
Match: V4S8Q0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013091mg PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-21
Identity = 66/139 (47.48%), Postives = 85/139 (61.15%), Query Frame = 1


Query: 14  HLPFSSTSL---IASIAVLSIFALVIFLCTSSRKSK------KPNLFQQRN----FVAKV 73
           +L F ST      A IAVLS+F+LV FLC S R++K      K  +  Q +     + K+
Sbjct: 12  NLQFRSTPFSLFFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSNEMRLLTKL 71

Query: 74  NSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGFDLSGDDYDDEVWRKTIIRGERCRP 133
           NSNIS +A  + K+ISW+KV+  DED                 DD VWR+TI+RGERCRP
Sbjct: 72  NSNISGKAHHLVKLISWKKVQVEDED-----------------DDAVWRRTIMRGERCRP 131

Query: 134 LEFSGKIDYDSDGNLLCDS 140
           L+FSGKI+YDS+GNLL DS
Sbjct: 132 LDFSGKIEYDSEGNLLPDS 133

[Close]

BLAST of CmaCh01G003560 vs. TrEMBL
Match: U5FKC5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03010g PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-21
Identity = 64/148 (43.24%), Postives = 89/148 (60.14%), Query Frame = 1


Query: 1   MARSFPSFSNHSYHLPFSSTSLIASIAVLSIFALVIFLCTSSRKSKKPNL---------- 60
           MAR   +  NHS+      ++ IA IAVLS+F+LV FLC S  K++K             
Sbjct: 1   MARPLLAMQNHSFLSNIPVSNFIAFIAVLSVFSLVTFLCASHHKARKSQRQGDEESVISH 60

Query: 61  FQQRNFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGFDLSGDDYDDEVWRK 120
             ++  ++K+NS+I  +A S+ KMISWRK+E  DED          D   DD  +E+WR+
Sbjct: 61  SGEKRLLSKINSDIREKAHSMVKMISWRKLEQ-DED---------CDEDCDDGSEEIWRR 120

Query: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCD 139
           +I+ GERCRPL+FSGKI YD +GNL+ D
Sbjct: 121 SIVMGERCRPLDFSGKIMYDCEGNLIPD 138

[Close]

BLAST of CmaCh01G003560 vs. NCBI nr
Match: gi|700202715|gb|KGN57848.1| (hypothetical protein Csa_3G348940 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 8.4e-41
Identity = 100/152 (65.79%), Postives = 116/152 (76.32%), Query Frame = 1


Query: 1   MARSFPSFSN--HSYHLPFSSTS----LIASIAVLSIFALVIFLCTSSRKSKKPNLFQQR 60
           MAR FP+ SN  H  HL F ST     ++++  +LSIFAL+IFLCTSSRKS K     + 
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQ-GRN 60

Query: 61  NFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGG--GGGGFDLSGDDYDDEVWRKTI 120
           NFV+K+NSNISSRAIS+AKMISWRKVEAA+E+E      G GG D    D ++EVWRKTI
Sbjct: 61  NFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTI 120

Query: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSKREFK 145
           IRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Sbjct: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of CmaCh01G003560 vs. NCBI nr
Match: gi|702386718|ref|XP_010064833.1| (PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis])

HSP 1 Score: 113.2 bits (282), Expect = 3.9e-22
Identity = 58/126 (46.03%), Postives = 84/126 (66.67%), Query Frame = 1


Query: 18  SSTSLIASIAVLSIFALVIFLCTSSRKSKKPNLFQ-------QRNFVAKVNSNISSRAIS 77
           S TS+   I++LSI +++ FLC S RKSKK            ++  V+++NS+ISS+A+ 
Sbjct: 23  SLTSIFLLISILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSKALL 82

Query: 78  IAKMISWRKVEAADEDEGGGGGGGGFDLSGDDYDDEVWRKTIIRGERCRPLEFSGKIDYD 137
           +AKM+SWRK E   E+E            G+D D+ +W+KTII+GERCRPL+FSGKI+YD
Sbjct: 83  MAKMMSWRKTEGGQEEE-----------DGEDSDEAIWKKTIIQGERCRPLDFSGKIEYD 137

[Close]

BLAST of CmaCh01G003560 vs. NCBI nr
Match: gi|661894272|emb|CDP02713.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 112.5 bits (280), Expect = 6.7e-22
Identity = 75/151 (49.67%), Postives = 96/151 (63.58%), Query Frame = 1


Query: 1   MARSFPSFSNHSYHLPFSSTSLIASIAVLSIFALVIFLCTS-SRKS------KKPNLFQQ 60
           M R+   F   ++ LP S T LI  IAVLSI ++V  LC S +RKS      K   L   
Sbjct: 1   MVRTIFPFHKPAF-LPPSITFLIMPIAVLSILSVVALLCGSEARKSRWRRGEKTVRLGDN 60

Query: 61  RNFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGFDLSGDDYDDEVWRKTII 120
           +  VA++ SN+SS+A+ +AKMISWRKV+    DEG        D  GDD ++ VWRKTII
Sbjct: 61  KKRVARLQSNLSSKALLLAKMISWRKVQ----DEGQE------DEDGDDDEEAVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSKREFK 145
           +GE+CRPL+FSGKI YDSDGNL+ DS +  K
Sbjct: 121 KGEKCRPLDFSGKILYDSDGNLIPDSPQPSK 140

[Close]

BLAST of CmaCh01G003560 vs. NCBI nr
Match: gi|985454016|ref|XP_015386969.1| (PREDICTED: uncharacterized protein LOC107177554 [Citrus sinensis])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 67/139 (48.20%), Postives = 86/139 (61.87%), Query Frame = 1


Query: 14  HLPFSSTS---LIASIAVLSIFALVIFLCTSSRKSK------KPNLFQQRN----FVAKV 73
           +L F ST    L A IAVLS+F+LV FLC S R++K      K  +  Q +     + K+
Sbjct: 12  NLQFRSTPFSLLFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSSEMRLLTKL 71

Query: 74  NSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGFDLSGDDYDDEVWRKTIIRGERCRP 133
           NSNIS +A  + K+ISW+KV+  DED                 DD VWR+TI+RGERCRP
Sbjct: 72  NSNISGKAHHLVKLISWKKVQVEDED-----------------DDAVWRRTIMRGERCRP 131

Query: 134 LEFSGKIDYDSDGNLLCDS 140
           L+FSGKI+YDS+GNLL DS
Sbjct: 132 LDFSGKIEYDSEGNLLPDS 133

[Close]

BLAST of CmaCh01G003560 vs. NCBI nr
Match: gi|567876107|ref|XP_006430643.1| (hypothetical protein CICLE_v10013091mg [Citrus clementina])

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-21
Identity = 66/139 (47.48%), Postives = 85/139 (61.15%), Query Frame = 1


Query: 14  HLPFSSTSL---IASIAVLSIFALVIFLCTSSRKSK------KPNLFQQRN----FVAKV 73
           +L F ST      A IAVLS+F+LV FLC S R++K      K  +  Q +     + K+
Sbjct: 12  NLQFRSTPFSLFFALIAVLSVFSLVTFLCASHRRAKNSLKAEKEGMSSQPSNEMRLLTKL 71

Query: 74  NSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGFDLSGDDYDDEVWRKTIIRGERCRP 133
           NSNIS +A  + K+ISW+KV+  DED                 DD VWR+TI+RGERCRP
Sbjct: 72  NSNISGKAHHLVKLISWKKVQVEDED-----------------DDAVWRRTIMRGERCRP 131

Query: 134 LEFSGKIDYDSDGNLLCDS 140
           L+FSGKI+YDS+GNLL DS
Sbjct: 132 LDFSGKIEYDSEGNLLPDS 133

The following BLAST results are available for this feature:

BLAST of CmaCh01G003560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh01G003560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7R8_CUCSA	5.8e-41	65.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1	[more]
A0A059BTL4_EUCGR	2.7e-22	46.03	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1	[more]
A0A068U546_COFCA	4.7e-22	49.67	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040182001 PE=4 SV=1	[more]
V4S8Q0_9ROSI	2.3e-21	47.48	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013091mg PE=4 SV=1	[more]
U5FKC5_POPTR	3.9e-21	43.24	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03010g PE=4 SV=1	[more]

BLAST of CmaCh01G003560 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh01G003560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202715\|gb\|KGN57848.1\|	8.4e-41	65.79	hypothetical protein Csa_3G348940 [Cucumis sativus]	[more]
gi\|702386718\|ref\|XP_010064833.1\|	3.9e-22	46.03	PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis]	[more]
gi\|661894272\|emb\|CDP02713.1\|	6.7e-22	49.67	unnamed protein product [Coffea canephora]	[more]
gi\|985454016\|ref\|XP_015386969.1\|	1.1e-21	48.20	PREDICTED: uncharacterized protein LOC107177554 [Citrus sinensis]	[more]
gi\|567876107\|ref\|XP_006430643.1\|	3.3e-21	47.48	hypothetical protein CICLE_v10013091mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G003560.1	CmaCh01G003560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 1..142 score: 3.4
None	No IPR available	PANTHER	PTHR33237:SF10	SUBFAMILY NOT NAMED	coord: 1..142 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G003560	Cucsa.012700	Cucumber (Gy14) v1	cgycmaB0551
CmaCh01G003560	Cla013168	Watermelon (97103) v1	cmawmB434
CmaCh01G003560	Csa3G348940	Cucumber (Chinese Long) v2	cmacuB455
CmaCh01G003560	MELO3C020292	Melon (DHL92) v3.5.1	cmameB431
CmaCh01G003560	ClCG05G010930	Watermelon (Charleston Gray)	cmawcgB407
CmaCh01G003560	CSPI03G21890	Wild cucumber (PI 183967)	cmacpiB458
CmaCh01G003560	CmoCh01G003720	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G003560	Cp4.1LG02g16800	Cucurbita pepo (Zucchini)	cmacpeB491
CmaCh01G003560	MELO3C020292.2	Melon (DHL92) v3.6.1	cmamedB496
CmaCh01G003560	CsaV3_3G021650	Cucumber (Chinese Long) v3	cmacucB0547
CmaCh01G003560	Cla97C05G093230	Watermelon (97103) v2	cmawmbB473
CmaCh01G003560	Bhi01G001347	Wax gourd	cmawgoB0559
CmaCh01G003560	Carg07443	Silver-seed gourd	carcmaB1059

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G003560	Cucurbita moschata (Rifu)	cmacmoB462
CmaCh01G003560	Cucurbita pepo (Zucchini)	cmacpeB494
CmaCh01G003560	Bottle gourd (USVL1VR-Ls)	cmalsiB440
CmaCh01G003560	Cucumber (Gy14) v2	cgybcmaB368
CmaCh01G003560	Silver-seed gourd	carcmaB0241
CmaCh01G003560	Cucurbita maxima (Rimu)	cmacmaB255