CSPI03G21890 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21890
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transmembrane protein, putative
Location	Chr3 : 18368810 .. 18369497 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAGCGAATCGCTGGGGATAAATTGAGTGGGAGCAAAAAAACCTCTACAACACACACCTTCCCAATTCGCTTCACACAAGATCACCATTTTTCTCTCTTCTTCTTCCCTCCGCCCCATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAATAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAATCTGATTCTTCTTTTTCTCCTGCGCTCTTTCTAATTCTTCAAATAATCTGACTTTAAATAACCCTGAAAACGTACAAACATCAATAGAAATGTTTACATCAAAATTTAGTACTAT

mRNA sequence

ATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAATAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAA

Coding sequence (CDS)

ATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAATAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAA

Homology

[Close]

BLAST of CSPI03G21890 vs. TrEMBL
Match: A0A0A0L7R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.1e-75
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
           MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60

Query: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120
           FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 152
           RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of CSPI03G21890 vs. TrEMBL
Match: A0A059BTL4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-19
Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 1


Query: 26  FLILSTSVILSIFALLIFLCTSSRKSNKSQQ--------GRNNFVSKMNSNISSRAISMA 85
           FL++S   ILSI ++L FLC S RKS KS +             VS++NS+ISS+A+ MA
Sbjct: 28  FLLIS---ILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSKALLMA 87

Query: 86  KMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIRGERCRPLEFSGKIDYD 144
           KM+SWRK E  +EEE+ E             D +E +W+KTII+GERCRPL+FSGKI+YD
Sbjct: 88  KMMSWRKTEGGQEEEDGE-------------DSDEAIWKKTIIQGERCRPLDFSGKIEYD 137

[Close]

BLAST of CSPI03G21890 vs. TrEMBL
Match: U5FKC5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03010g PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-17
Identity = 66/156 (42.31%), Postives = 91/156 (58.33%), Query Frame = 1


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQ---- 60
           MARP   + N S  L  +  S   +F+      +LS+F+L+ FLC S  K+ KSQ+    
Sbjct: 1   MARPLLAMQNHSF-LSNIPVSNFIAFI-----AVLSVFSLVTFLCASHHKARKSQRQGDE 60

Query: 61  -------GRNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKD 120
                  G    +SK+NS+I  +A SM KMISWRK+E  E+ +E+        CD    D
Sbjct: 61  ESVISHSGEKRLLSKINSDIREKAHSMVKMISWRKLEQDEDCDED--------CD----D 120

Query: 121 EEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCD 146
             EE+WR++I+ GERCRPL+FSGKI YD +GNL+ D
Sbjct: 121 GSEEIWRRSIVMGERCRPLDFSGKIMYDCEGNLIPD 138

[Close]

BLAST of CSPI03G21890 vs. TrEMBL
Match: M5XHK7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021818mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.9e-17
Identity = 48/86 (55.81%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120
           F++K+NS ISS+A++MAKM+SWRK+EA EE+++++++         D   +E VWRK+II
Sbjct: 22  FIAKLNSKISSKALAMAKMVSWRKMEAGEEDQKDDDD---------DDHSDEAVWRKSII 81

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDS 147
            GERC PL FSGKIDYDSDGNL  +S
Sbjct: 82  MGERCAPLNFSGKIDYDSDGNLQPES 98

[Close]

BLAST of CSPI03G21890 vs. TrEMBL
Match: A0A068U546_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040182001 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.9e-17
Identity = 62/141 (43.97%), Postives = 90/141 (63.83%), Query Frame = 1


Query: 19  FFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNNF--------VSKMNSNIS 78
           F     +FLI+  +V LSI +++  LC S  + ++ ++G            V+++ SN+S
Sbjct: 13  FLPPSITFLIMPIAV-LSILSVVALLCGSEARKSRWRRGEKTVRLGDNKKRVARLQSNLS 72

Query: 79  SRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIRGERCRPLEF 138
           S+A+ +AKMISWRKV+    +E +E+E G         D+EE VWRKTII+GE+CRPL+F
Sbjct: 73  SKALLLAKMISWRKVQ----DEGQEDEDGD--------DDEEAVWRKTIIKGEKCRPLDF 132

Query: 139 SGKIDYDSDGNLLCDSNRDFK 152
           SGKI YDSDGNL+ DS +  K
Sbjct: 133 SGKILYDSDGNLIPDSPQPSK 140

[Close]

BLAST of CSPI03G21890 vs. NCBI nr
Match: gi|700202715|gb|KGN57848.1| (hypothetical protein Csa_3G348940 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 3.1e-75
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
           MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60

Query: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120
           FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 152
           RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of CSPI03G21890 vs. NCBI nr
Match: gi|702386718|ref|XP_010064833.1| (PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis])

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-19
Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 1


Query: 26  FLILSTSVILSIFALLIFLCTSSRKSNKSQQ--------GRNNFVSKMNSNISSRAISMA 85
           FL++S   ILSI ++L FLC S RKS KS +             VS++NS+ISS+A+ MA
Sbjct: 28  FLLIS---ILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSRLNSSISSKALLMA 87

Query: 86  KMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIRGERCRPLEFSGKIDYD 144
           KM+SWRK E  +EEE+ E             D +E +W+KTII+GERCRPL+FSGKI+YD
Sbjct: 88  KMMSWRKTEGGQEEEDGE-------------DSDEAIWKKTIIQGERCRPLDFSGKIEYD 137

[Close]

BLAST of CSPI03G21890 vs. NCBI nr
Match: gi|1021548419|ref|XP_016165658.1| (PREDICTED: uncharacterized protein LOC107608365 [Arachis ipaensis])

HSP 1 Score: 103.2 bits (256), Expect = 4.1e-19
Identity = 66/134 (49.25%), Postives = 92/134 (68.66%), Query Frame = 1


Query: 26  FLILSTSVILSIFALLIFLCTS-------SRKSNKSQQGRNNFVSKMNSNISSRAIS-MA 85
           FL+L +  I SIF+++ FLC +       +R    +   +N  V+K+NSN+S+RA+S MA
Sbjct: 17  FLVLLS--IFSIFSVITFLCGTRKMKKFKARALESASSKKNKLVTKINSNLSNRAVSSMA 76

Query: 86  KMISWRKVEAAEEEEEEEEE--RGSGGCDFIDKDEEEEVWRKTIIRGERCRPLEFSGKID 145
           KM+SWRKV+A EEEEEE+EE    S   D   KD+E  +W+K I+ GERCRP++FSGKI 
Sbjct: 77  KMLSWRKVQATEEEEEEQEEIFYSSDDHDQHQKDDEA-IWKKNILMGERCRPVDFSGKII 136

Query: 146 YDSDGNLLCDSNRD 150
           YD+ GNL+ D +RD
Sbjct: 137 YDAHGNLVRDLSRD 147

[Close]

BLAST of CSPI03G21890 vs. NCBI nr
Match: gi|1012204338|ref|XP_015931476.1| (PREDICTED: uncharacterized protein LOC107457810 [Arachis duranensis])

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-18
Identity = 64/134 (47.76%), Postives = 91/134 (67.91%), Query Frame = 1


Query: 26  FLILSTSVILSIFALLIFLCTS-------SRKSNKSQQGRNNFVSKMNSNISSRAIS-MA 85
           FL+L +  I SIF+++ FLC +       +R    +   +N  ++K+NSN+S+RA+S MA
Sbjct: 17  FLVLLS--IFSIFSVITFLCGTRKMKKFKARALESASSKKNKLITKINSNLSNRAVSSMA 76

Query: 86  KMISWRKVEAAEEEEEEEEE--RGSGGCDFIDKDEEEEVWRKTIIRGERCRPLEFSGKID 145
           KM+SWRKV+A EEEEEE+EE    S   D   KD+E  +W+K I+ GERCRP++FSGKI 
Sbjct: 77  KMLSWRKVQATEEEEEEQEEIFYSSDDHDQHQKDDEA-IWKKNILMGERCRPVDFSGKII 136

Query: 146 YDSDGNLLCDSNRD 150
           YD+ GNL+ D + D
Sbjct: 137 YDAHGNLVRDLSHD 147

[Close]

BLAST of CSPI03G21890 vs. NCBI nr
Match: gi|566211031|ref|XP_006372589.1| (hypothetical protein POPTR_0017s03010g [Populus trichocarpa])

HSP 1 Score: 96.3 bits (238), Expect = 5.0e-17
Identity = 66/156 (42.31%), Postives = 91/156 (58.33%), Query Frame = 1


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQ---- 60
           MARP   + N S  L  +  S   +F+      +LS+F+L+ FLC S  K+ KSQ+    
Sbjct: 1   MARPLLAMQNHSF-LSNIPVSNFIAFI-----AVLSVFSLVTFLCASHHKARKSQRQGDE 60

Query: 61  -------GRNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKD 120
                  G    +SK+NS+I  +A SM KMISWRK+E  E+ +E+        CD    D
Sbjct: 61  ESVISHSGEKRLLSKINSDIREKAHSMVKMISWRKLEQDEDCDED--------CD----D 120

Query: 121 EEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCD 146
             EE+WR++I+ GERCRPL+FSGKI YD +GNL+ D
Sbjct: 121 GSEEIWRRSIVMGERCRPLDFSGKIMYDCEGNLIPD 138

The following BLAST results are available for this feature:

BLAST of CSPI03G21890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G21890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7R8_CUCSA	2.1e-75	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G348940 PE=4 SV=1	[more]
A0A059BTL4_EUCGR	1.7e-19	49.21	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02821 PE=4 SV=1	[more]
U5FKC5_POPTR	3.5e-17	42.31	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03010g PE=4 SV=1	[more]
M5XHK7_PRUPE	5.9e-17	55.81	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021818mg PE=4 S...	[more]
A0A068U546_COFCA	5.9e-17	43.97	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040182001 PE=4 SV=1	[more]

BLAST of CSPI03G21890 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G21890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202715\|gb\|KGN57848.1\|	3.1e-75	100.00	hypothetical protein Csa_3G348940 [Cucumis sativus]	[more]
gi\|702386718\|ref\|XP_010064833.1\|	2.4e-19	49.21	PREDICTED: uncharacterized protein LOC104451988 [Eucalyptus grandis]	[more]
gi\|1021548419\|ref\|XP_016165658.1\|	4.1e-19	49.25	PREDICTED: uncharacterized protein LOC107608365 [Arachis ipaensis]	[more]
gi\|1012204338\|ref\|XP_015931476.1\|	2.0e-18	47.76	PREDICTED: uncharacterized protein LOC107457810 [Arachis duranensis]	[more]
gi\|566211031\|ref\|XP_006372589.1\|	5.0e-17	42.31	hypothetical protein POPTR_0017s03010g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21890.1	CSPI03G21890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 1..143 score: 3.2
None	No IPR available	PANTHER	PTHR33237:SF10	SUBFAMILY NOT NAMED	coord: 1..143 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G21890	Cla013168	Watermelon (97103) v1	cpiwmB245
CSPI03G21890	Csa3G348940	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G21890	MELO3C020292	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G21890	ClCG05G010930	Watermelon (Charleston Gray)	cpiwcgB240
CSPI03G21890	MELO3C020292.2	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G21890	CsaV3_3G021650	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G21890	Cla97C05G093230	Watermelon (97103) v2	cpiwmbB224
CSPI03G21890	Bhi01G001347	Wax gourd	cpiwgoB299
CSPI03G21890	Cucsa.012700	Cucumber (Gy14) v1	cgycpiB299
CSPI03G21890	CmaCh01G003560	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G21890	CmoCh01G003720	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G21890	Cp4.1LG02g16800	Cucurbita pepo (Zucchini)	cpecpiB552
CSPI03G21890	Carg07443	Silver-seed gourd	carcpiB0798

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G21890	Cucumber (Gy14) v2	cgybcpiB110