CsaV3_5G015410 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G015410
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 12763392 .. 12764319 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTGGGTGTGGAGAGAGGAAGAAACGGCGGTAAGGGAAGGAAAGGGGAAGCAGGAGCCGTGGCTGCAATTTTCTTCATATGGCTAATTTTGGTGGTGTCTCGAATGAGATTATCGTCTGCCGCCAGTAAAGAAGTTAACGGCCGGATGTTAACAAAATCCACCGTCCTCCACCGTAAGACTCATATTTTCGAAACGGAGGAGGTGTTTAAACCGCCAGCGGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGGTGATCCATACCGGCCCAAATCCACTTCACAATTAAGCCCAATACGGCCCAACAACAACATTCCCATATCTGTTTATTCTTCTACAGATCAATTTCTTCTGTAAGAGAAGCTTTCAATTATTACTATTTTCTTTTTAATTATTTAGAAGTTCGAAGAGAAATAAGATCATTAGGCTAGCCTTTTTTAGAAAAATCAAAAACAAAAAGCTAGTGATAATGCTCTTGTTTCTTCTTCTAATATTGTAGTTTTTTTTTTTTTTTTTCTTTTTTACTATTATTTTTTGTTCTCTTGCATGTGTTTTAATTTATTGCTTTTGTAGTTATTTGTCCATCCCTACATTTCTTTTAATTCAAATATTACAGATTTGAATATTTCACATTTAAAACACCACTAACTAAATTGTATATTATTTTAATTTGTTAGAATTTTAAATTTGAATTCTAAAGTAATTGCAACTATTTTTTTTTTAATTTTATCAAAGTTGGCATTTTTGTAAGAAAAATAATTTGTAATTGGATTGACTTAATAGTAGTGATGATAATCATGGATTTACTGGTTCTAATTAAAGTAACTGTGTCTTTGTTTTTACAACTTTCTAATTCATTTCTTTGAAAAATATTTTAGTTAAAGTAG

mRNA sequence

ATGAGAGTGGGTGTGGAGAGAGGAAGAAACGGCGGTAAGGGAAGGAAAGGGGAAGCAGGAGCCGTGGCTGCAATTTTCTTCATATGGCTAATTTTGGTGGTGTCTCGAATGAGATTATCGTCTGCCGCCAGTAAAGAAGTTAACGGCCGGATGTTAACAAAATCCACCGTCCTCCACCGTAAGACTCATATTTTCGAAACGGAGGAGGTGTTTAAACCGCCAGCGGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGTTAAAGTAG

Coding sequence (CDS)

ATGAGAGTGGGTGTGGAGAGAGGAAGAAACGGCGGTAAGGGAAGGAAAGGGGAAGCAGGAGCCGTGGCTGCAATTTTCTTCATATGGCTAATTTTGGTGGTGTCTCGAATGAGATTATCGTCTGCCGCCAGTAAAGAAGTTAACGGCCGGATGTTAACAAAATCCACCGTCCTCCACCGTAAGACTCATATTTTCGAAACGGAGGAGGTGTTTAAACCGCCAGCGGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGTTAAAGTAG

Protein sequence

MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRLK

Homology

[Close]

BLAST of CsaV3_5G015410 vs. NCBI nr
Match: XP_011656136.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus] >KGN49680.1 hypothetical protein Csa_5G060150 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 3.2e-32
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR 60
           MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR
Sbjct: 1   MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRL 100
           KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKR+
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRV 99

[Close]

BLAST of CsaV3_5G015410 vs. TrEMBL
Match: tr|A0A0A0KIX6|A0A0A0KIX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-32
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR 60
           MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR
Sbjct: 1   MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRL 100
           KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKR+
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRV 99

The following BLAST results are available for this feature:

BLAST of CsaV3_5G015410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656136.1	3.2e-32	98.99	PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus] >KGN4968...	[more]

BLAST of CsaV3_5G015410 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIX6\|A0A0A0KIX6_CUCSA	2.1e-32	98.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048731	system development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G015410.1	CsaV3_5G015410.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G015410	CSPI05G01420	Wild cucumber (PI 183967)	cpicucB286
CsaV3_5G015410	Cucsa.261730	Cucumber (Gy14) v1	cgycucB403
CsaV3_5G015410	CmaCh04G009910	Cucurbita maxima (Rimu)	cmacucB0878
CsaV3_5G015410	CmoCh04G010690	Cucurbita moschata (Rifu)	cmocucB0861
CsaV3_5G015410	Cp4.1LG01g07790	Cucurbita pepo (Zucchini)	cpecucB0533
CsaV3_5G015410	Carg00105	Silver-seed gourd	carcucB0707
CsaV3_5G015410	Cla007507	Watermelon (97103) v1	cucwmB412
CsaV3_5G015410	MELO3C018297	Melon (DHL92) v3.5.1	cucmeB387
CsaV3_5G015410	ClCG07G006770	Watermelon (Charleston Gray)	cucwcgB427
CsaV3_5G015410	Lsi04G011690	Bottle gourd (USVL1VR-Ls)	cuclsiB395
CsaV3_5G015410	MELO3C018297.2	Melon (DHL92) v3.6.1	cucmedB380
CsaV3_5G015410	Cla97C07G134480	Watermelon (97103) v2	cucwmbB413
CsaV3_5G015410	Bhi07G000236	Wax gourd	cucwgoB518

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G015410	Watermelon (97103) v1	cucwmB461
CsaV3_5G015410	Silver-seed gourd	carcucB0204
CsaV3_5G015410	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G015410	Cucurbita maxima (Rimu)	cmacucB0879
CsaV3_5G015410	Cucurbita moschata (Rifu)	cmocucB0867
CsaV3_5G015410	Watermelon (Charleston Gray)	cucwcgB383