Cp4.1LG01g07790 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g07790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	CLAVATA3/ESR-RELATED 16
Location	Cp4.1LG01 : 5321598 .. 5321921 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTGGGTGTAGAGAGAGGAAGAAACGGCGGTAACGGAACCAAACGGCACGCGGGAGGAGCAGTCGTCGCCGCCGCAATTTTCTTCATTTGTCTTATTTTCGTGCTCTCTCGGATGACACTTTCCTCCGCCGCCGTTAGAGGTGTTAACGTCCCCACGTTAACTAAGTCCGCCACCCTTCACCGGAAGACCCATGTTTTTGAAACGGAGGAGGTCTTTAAACCACCGGCCGGTTTCAAAATCCACGCTGACGTTGCGGACATTGTATACGAGGATGATAAACGGGTGGTCCATACCGGCCCAAATCCGCTTCACAATTAG

mRNA sequence

ATGAGAGTGGGTGTAGAGAGAGGAAGAAACGGCGGTAACGGAACCAAACGGCACGCGGGAGGAGCAGTCGTCGCCGCCGCAATTTTCTTCATTTGTCTTATTTTCGTGCTCTCTCGGATGACACTTTCCTCCGCCGCCGTTAGAGGTGTTAACGTCCCCACGTTAACTAAGTCCGCCACCCTTCACCGGAAGACCCATGTTTTTGAAACGGAGGAGGTCTTTAAACCACCGGCCGGTTTCAAAATCCACGCTGACGTTGCGGACATTGTATACGAGGATGATAAACGGGTGGTCCATACCGGCCCAAATCCGCTTCACAATTAG

Coding sequence (CDS)

ATGAGAGTGGGTGTAGAGAGAGGAAGAAACGGCGGTAACGGAACCAAACGGCACGCGGGAGGAGCAGTCGTCGCCGCCGCAATTTTCTTCATTTGTCTTATTTTCGTGCTCTCTCGGATGACACTTTCCTCCGCCGCCGTTAGAGGTGTTAACGTCCCCACGTTAACTAAGTCCGCCACCCTTCACCGGAAGACCCATGTTTTTGAAACGGAGGAGGTCTTTAAACCACCGGCCGGTTTCAAAATCCACGCTGACGTTGCGGACATTGTATACGAGGATGATAAACGGGTGGTCCATACCGGCCCAAATCCGCTTCACAATTAG

Protein sequence

MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSATLHRKTHVFETEEVFKPPAGFKIHADVADIVYEDDKRVVHTGPNPLHN

Homology

[Close]

BLAST of Cp4.1LG01g07790 vs. Swiss-Prot
Match: CLE16_ARATH (CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana GN=CLE16 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 26  AAIFFICLIFVLSRMTLSSAAVRGVN-VPTLTKSATLHRKTHVFETEEVFKPPAGFKIHA 85
           AA+FF C IFV ++  +SS+A+   +  P+L + A    +   F+  +      G +   
Sbjct: 22  AAVFF-CGIFVFAQFGISSSALFAPDHYPSLPRKAGHFHEMASFQAPKATVSFTGQRREE 81

Query: 86  DVADIVYEDDKRVVHTGPNPLHN 108
           +  D VY+DDKR+VHTGPNPLHN
Sbjct: 82  ENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of Cp4.1LG01g07790 vs. TrEMBL
Match: A0A0A0KIX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G060150 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.4e-34
Identity = 81/112 (72.32%), Postives = 86/112 (76.79%), Query Frame = 1


Query: 1   MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
           MRVGVERGRNGG G K  AG     AAIFFI LI V+SRM LSSAA + VN   LTKS  
Sbjct: 1   MRVGVERGRNGGKGRKGEAGAV---AAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTV 60

Query: 61  LHRKTHVFETEEVFKPPAGFKIHA-----DVADIVYEDDKRVVHTGPNPLHN 108
           LHRKTH+FETEEVFKPPAGFK+H      DV DIVYEDDKRV+HTGPNPLHN
Sbjct: 61  LHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Cp4.1LG01g07790 vs. TrEMBL
Match: B9HW54_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12130g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 42/109 (38.53%), Postives = 55/109 (50.46%), Query Frame = 1


Query: 2   RVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSATL 61
           +VGVE  R      +R+AG A  AA IF   ++ +L+++ +        + P      +L
Sbjct: 6   KVGVEAAR-----ARRYAGAAR-AAIIFLFWILLILAQLGVFLVVHEETDKPV----KSL 65

Query: 62  HRKTHVFETEEVFKPP---AGFKIHADVADIVYEDDKRVVHTGPNPLHN 108
            RK  VFET  V   P       I     D VYEDDKR +HTGPNPLHN
Sbjct: 66  PRKARVFETGSVHASPNQDQPVNIDGGDPDAVYEDDKRTIHTGPNPLHN 104

[Close]

BLAST of Cp4.1LG01g07790 vs. TrEMBL
Match: V4UGP5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017256mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.3e-06
Identity = 41/114 (35.96%), Postives = 56/114 (49.12%), Query Frame = 1


Query: 1   MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
           M++ V R      G +R   GA  A+  F++ LIF L  +  +       +  T T S+ 
Sbjct: 1   MQMTVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALH-----DDETGTYSSF 60

Query: 61  LHRKTHVFETEEVFKPP----AGFKIHADV---ADIVYEDDKRVVHTGPNPLHN 108
             RKT  F TE  F  P    +G  +  +       VYEDDKR++HTGPNPLHN
Sbjct: 61  SARKTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of Cp4.1LG01g07790 vs. TAIR10
Match: AT2G01505.1 (AT2G01505.1 CLAVATA3/ESR-RELATED 16)

HSP 1 Score: 53.9 bits (128), Expect = 7.0e-08
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 26  AAIFFICLIFVLSRMTLSSAAVRGVN-VPTLTKSATLHRKTHVFETEEVFKPPAGFKIHA 85
           AA+FF C IFV ++  +SS+A+   +  P+L + A    +   F+  +      G +   
Sbjct: 22  AAVFF-CGIFVFAQFGISSSALFAPDHYPSLPRKAGHFHEMASFQAPKATVSFTGQRREE 81

Query: 86  DVADIVYEDDKRVVHTGPNPLHN 108
           +  D VY+DDKR+VHTGPNPLHN
Sbjct: 82  ENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of Cp4.1LG01g07790 vs. NCBI nr
Match: gi|778708173|ref|XP_011656136.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 9.1e-34
Identity = 81/112 (72.32%), Postives = 86/112 (76.79%), Query Frame = 1


Query: 1   MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
           MRVGVERGRNGG G K  AG     AAIFFI LI V+SRM LSSAA + VN   LTKS  
Sbjct: 1   MRVGVERGRNGGKGRKGEAGAV---AAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTV 60

Query: 61  LHRKTHVFETEEVFKPPAGFKIHA-----DVADIVYEDDKRVVHTGPNPLHN 108
           LHRKTH+FETEEVFKPPAGFK+H      DV DIVYEDDKRV+HTGPNPLHN
Sbjct: 61  LHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Cp4.1LG01g07790 vs. NCBI nr
Match: gi|224111494|ref|XP_002315878.1| (hypothetical protein POPTR_0010s12130g [Populus trichocarpa])

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-06
Identity = 42/109 (38.53%), Postives = 55/109 (50.46%), Query Frame = 1


Query: 2   RVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSATL 61
           +VGVE  R      +R+AG A  AA IF   ++ +L+++ +        + P      +L
Sbjct: 6   KVGVEAAR-----ARRYAGAAR-AAIIFLFWILLILAQLGVFLVVHEETDKPV----KSL 65

Query: 62  HRKTHVFETEEVFKPP---AGFKIHADVADIVYEDDKRVVHTGPNPLHN 108
            RK  VFET  V   P       I     D VYEDDKR +HTGPNPLHN
Sbjct: 66  PRKARVFETGSVHASPNQDQPVNIDGGDPDAVYEDDKRTIHTGPNPLHN 104

[Close]

BLAST of Cp4.1LG01g07790 vs. NCBI nr
Match: gi|567911845|ref|XP_006448236.1| (hypothetical protein CICLE_v10017256mg [Citrus clementina])

HSP 1 Score: 58.9 bits (141), Expect = 6.2e-06
Identity = 41/114 (35.96%), Postives = 56/114 (49.12%), Query Frame = 1


Query: 1   MRVGVERGRNGGNGTKRHAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
           M++ V R      G +R   GA  A+  F++ LIF L  +  +       +  T T S+ 
Sbjct: 1   MQMTVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALH-----DDETGTYSSF 60

Query: 61  LHRKTHVFETEEVFKPP----AGFKIHADV---ADIVYEDDKRVVHTGPNPLHN 108
             RKT  F TE  F  P    +G  +  +       VYEDDKR++HTGPNPLHN
Sbjct: 61  SARKTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g07790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLE16_ARATH	1.2e-06	39.76	CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana GN=CLE16 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g07790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIX6_CUCSA	6.4e-34	72.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G060150 PE=4 SV=1	[more]
B9HW54_POPTR	3.3e-06	38.53	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12130g PE=4 SV=1	[more]
V4UGP5_9ROSI	4.3e-06	35.96	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017256mg PE=4 SV=1	[more]

BLAST of Cp4.1LG01g07790 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01505.1	7.0e-08	39.76	CLAVATA3/ESR-RELATED 16	[more]

BLAST of Cp4.1LG01g07790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708173\|ref\|XP_011656136.1\|	9.1e-34	72.32	PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus]	[more]
gi\|224111494\|ref\|XP_002315878.1\|	4.7e-06	38.53	hypothetical protein POPTR_0010s12130g [Populus trichocarpa]	[more]
gi\|567911845\|ref\|XP_006448236.1\|	6.2e-06	35.96	hypothetical protein CICLE_v10017256mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048731	system development

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g07790.1	Cp4.1LG01g07790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34545:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16-RELATED	coord: 5..107 score: 7.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g07790	CmaCh04G009910	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g07790	CmoCh04G010690	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g07790	Csa5G060150	Cucumber (Chinese Long) v2	cpecuB428
Cp4.1LG01g07790	MELO3C018297	Melon (DHL92) v3.5.1	cpemeB383
Cp4.1LG01g07790	ClCG07G006770	Watermelon (Charleston Gray)	cpewcgB409
Cp4.1LG01g07790	CSPI05G01420	Wild cucumber (PI 183967)	cpecpiB433
Cp4.1LG01g07790	Lsi04G011690	Bottle gourd (USVL1VR-Ls)	cpelsiB361
Cp4.1LG01g07790	MELO3C018297.2	Melon (DHL92) v3.6.1	cpemedB444
Cp4.1LG01g07790	CsaV3_5G015410	Cucumber (Chinese Long) v3	cpecucB0533
Cp4.1LG01g07790	Bhi07G000236	Wax gourd	cpewgoB0553
Cp4.1LG01g07790	Carg00105	Silver-seed gourd	carcpeB0938

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g07790	Silver-seed gourd	carcpeB0259
Cp4.1LG01g07790	Cucurbita pepo (Zucchini)	cpecpeB374
Cp4.1LG01g07790	Cucurbita maxima (Rimu)	cmacpeB722
Cp4.1LG01g07790	Cucurbita moschata (Rifu)	cmocpeB674
Cp4.1LG01g07790	Wild cucumber (PI 183967)	cpecpiB436
Cp4.1LG01g07790	Cucumber (Chinese Long) v2	cpecuB429
Cp4.1LG01g07790	Melon (DHL92) v3.5.1	cpemeB368
Cp4.1LG01g07790	Melon (DHL92) v3.6.1	cpemedB428