Lsi04G011690 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G011690
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Clavata3/esr-related 16, putative
Location	chr04 : 16976423 .. 16976752 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTGGGTGTAGAAAGAGGAAGAAACGGCGGTAACGGAAGGAAACGGCAAGCCGGAGCGGTGGCGGCAATTTTCTTCATATGGCTTATTTTGGTGGTGTCTCGAATGAGATTATCGTCCGCCGCCGTTAAAGGGGTTAATGGCCGGGCGTTAACCAAATCCACCGTCCTTCACCGGAAGACTCACATTTTCGAGATGGAGGAGGTCTTCAAACCGCCAGCCGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTGTGGACATAATATACGAAGATGATAAACGGGTGGTCCACACCGGCCCAAATCCGCTTCACAATTAG

mRNA sequence

ATGAGAGTGGGTGTAGAAAGAGGAAGAAACGGCGGTAACGGAAGGAAACGGCAAGCCGGAGCGGTGGCGGCAATTTTCTTCATATGGCTTATTTTGGTGGTGTCTCGAATGAGATTATCGTCCGCCGCCGTTAAAGGGGTTAATGGCCGGGCGTTAACCAAATCCACCGTCCTTCACCGGAAGACTCACATTTTCGAGATGGAGGAGGTCTTCAAACCGCCAGCCGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTGTGGACATAATATACGAAGATGATAAACGGGTGGTCCACACCGGCCCAAATCCGCTTCACAATTAG

Coding sequence (CDS)

ATGAGAGTGGGTGTAGAAAGAGGAAGAAACGGCGGTAACGGAAGGAAACGGCAAGCCGGAGCGGTGGCGGCAATTTTCTTCATATGGCTTATTTTGGTGGTGTCTCGAATGAGATTATCGTCCGCCGCCGTTAAAGGGGTTAATGGCCGGGCGTTAACCAAATCCACCGTCCTTCACCGGAAGACTCACATTTTCGAGATGGAGGAGGTCTTCAAACCGCCAGCCGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTGTGGACATAATATACGAAGATGATAAACGGGTGGTCCACACCGGCCCAAATCCGCTTCACAATTAG

Protein sequence

MRVGVERGRNGGNGRKRQAGAVAAIFFIWLILVVSRMRLSSAAVKGVNGRALTKSTVLHRKTHIFEMEEVFKPPAGFKVHGGGENDDVVDIIYEDDKRVVHTGPNPLHN

Homology

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BLAST of Lsi04G011690 vs. TrEMBL
Match: A0A0A0KIX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G060150 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 6.5e-50
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 1


Query: 1   MRVGVERGRNGGNGRKRQAGAVAAIFFIWLILVVSRMRLSSAAVKGVNGRALTKSTVLHR 60
           MRVGVERGRNGG GRK +AGAVAAIFFIWLILVVSRMRLSSAA K VNGR LTKSTVLHR
Sbjct: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KTHIFEMEEVFKPPAGFKVHGGGENDDVVDIIYEDDKRVVHTGPNPLHN 110
           KTHIFE EEVFKPPAGFKVHGGGENDDV DI+YEDDKRV+HTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Lsi04G011690 vs. TrEMBL
Match: V4UGP5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017256mg PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.0e-10
Identity = 47/112 (41.96%), Postives = 61/112 (54.46%), Query Frame = 1


Query: 1   MRVGVERGRNGGNGRKRQ-AGAVAAIFFIWLILVVSRMRLSSAAVKGVNGRALTKSTVLH 60
           M++ V R      GR+R+ AGA AA FF W+IL+ S + L  A      G   T S+   
Sbjct: 1   MQMTVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSA 60

Query: 61  RKTHIFEMEEVFK--PPAGFKVHGGGENDDVVDIIYEDDKRVVHTGPNPLHN 110
           RKT  F  E  F   PP+   +    E D+    +YEDDKR++HTGPNPLHN
Sbjct: 61  RKTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of Lsi04G011690 vs. TrEMBL
Match: A0A067FB56_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048706mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-10
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 1


Query: 15  RKRQAGAVAAIFFIWLILVVSRMRLSSAAVKGVNGRALTKSTVLHRKTHIFEMEEVFK-- 74
           R+R AGA AA FF W+IL+ S + L  A      G   T S+   RKT  F  E  F   
Sbjct: 27  RRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSARKTRSFNTESTFHAP 86

Query: 75  PPAGFKVHGGGENDDVVDIIYEDDKRVVHTGPNPLHN 110
           PP+   +    E D+    +YEDDKR++HTGPNPLHN
Sbjct: 87  PPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

[Close]

BLAST of Lsi04G011690 vs. TrEMBL
Match: W9QTS0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022931 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-07
Identity = 44/107 (41.12%), Postives = 55/107 (51.40%), Query Frame = 1


Query: 6   ERGRNGGNGRKRQAGA-VAAIFFIWLILVVSRMRLSSAA-VKGVNGRALTKSTVLHRKTH 65
           + G     G+    G  VAA FF W+IL+ S +  SSAA V   NGR   +S    RK  
Sbjct: 4   KEGERSRRGKGSHGGVKVAATFFFWVILIFSHLSFSSAAKVLHRNGRLYRQSPP--RKAR 63

Query: 66  IFEMEEV-FKPPAGFKVHGGGENDDVVDIIYEDDKRVVHTGPNPLHN 110
             + +   F  P        G +D   DI+Y DDKR+VHTGPNPLHN
Sbjct: 64  FVDTKTASFHAPLSPANSINGASDP--DILYGDDKRLVHTGPNPLHN 106

[Close]

BLAST of Lsi04G011690 vs. TrEMBL
Match: A0A061E9D9_THECC (Clavata3/esr-related 16, putative OS=Theobroma cacao GN=TCM_010891 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 1


Query: 14  GRKRQAGAVAAIFFIWLILVVSRMRLSSAAVKGVNGRALTKSTVLHRKTHIFEMEEVFKP 73
           GR R + A AA+FF+W+I + S+  L  A V    G    +S    RK   F+      P
Sbjct: 12  GRSRCSVARAALFFLWIIFIFSQFGLHFA-VHEEAGHQYFRSPP--RKARFFDTASFHAP 71

Query: 74  PAGFKVHGGGENDDVVDIIYEDDKRVVHTGPNPLHN 110
            +      G E D   D +Y DDKR+VHTGPNPLHN
Sbjct: 72  SSSV----GNEGDP--DTLYGDDKRIVHTGPNPLHN 98

[Close]

BLAST of Lsi04G011690 vs. TAIR10
Match: AT2G01505.1 (AT2G01505.1 CLAVATA3/ESR-RELATED 16)

HSP 1 Score: 50.4 bits (119), Expect = 7.9e-07
Identity = 35/88 (39.77%), Postives = 46/88 (52.27%), Query Frame = 1


Query: 23  AAIFFIWLILVVSRMRLSSAAVKGVNGRALTKSTVLHRKT-HIFEMEEVFKPPAGFKVHG 82
           AA+FF   I V ++  +SS+A+      A      L RK  H  EM     P A     G
Sbjct: 22  AAVFFCG-IFVFAQFGISSSALF-----APDHYPSLPRKAGHFHEMASFQAPKATVSFTG 81

Query: 83  GGENDDVVDIIYEDDKRVVHTGPNPLHN 110
               ++  D +Y+DDKR+VHTGPNPLHN
Sbjct: 82  QRREEENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of Lsi04G011690 vs. NCBI nr
Match: gi|778708173|ref|XP_011656136.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 9.3e-50
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 1


Query: 1   MRVGVERGRNGGNGRKRQAGAVAAIFFIWLILVVSRMRLSSAAVKGVNGRALTKSTVLHR 60
           MRVGVERGRNGG GRK +AGAVAAIFFIWLILVVSRMRLSSAA K VNGR LTKSTVLHR
Sbjct: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KTHIFEMEEVFKPPAGFKVHGGGENDDVVDIIYEDDKRVVHTGPNPLHN 110
           KTHIFE EEVFKPPAGFKVHGGGENDDV DI+YEDDKRV+HTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Lsi04G011690 vs. NCBI nr
Match: gi|567911845|ref|XP_006448236.1| (hypothetical protein CICLE_v10017256mg [Citrus clementina])

HSP 1 Score: 72.0 bits (175), Expect = 7.2e-10
Identity = 47/112 (41.96%), Postives = 61/112 (54.46%), Query Frame = 1


Query: 1   MRVGVERGRNGGNGRKRQ-AGAVAAIFFIWLILVVSRMRLSSAAVKGVNGRALTKSTVLH 60
           M++ V R      GR+R+ AGA AA FF W+IL+ S + L  A      G   T S+   
Sbjct: 1   MQMTVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSA 60

Query: 61  RKTHIFEMEEVFK--PPAGFKVHGGGENDDVVDIIYEDDKRVVHTGPNPLHN 110
           RKT  F  E  F   PP+   +    E D+    +YEDDKR++HTGPNPLHN
Sbjct: 61  RKTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of Lsi04G011690 vs. NCBI nr
Match: gi|641845738|gb|KDO64624.1| (hypothetical protein CISIN_1g048706mg, partial [Citrus sinensis])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 1


Query: 15  RKRQAGAVAAIFFIWLILVVSRMRLSSAAVKGVNGRALTKSTVLHRKTHIFEMEEVFK-- 74
           R+R AGA AA FF W+IL+ S + L  A      G   T S+   RKT  F  E  F   
Sbjct: 27  RRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSARKTRSFNTESTFHAP 86

Query: 75  PPAGFKVHGGGENDDVVDIIYEDDKRVVHTGPNPLHN 110
           PP+   +    E D+    +YEDDKR++HTGPNPLHN
Sbjct: 87  PPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

[Close]

BLAST of Lsi04G011690 vs. NCBI nr
Match: gi|703087805|ref|XP_010093369.1| (hypothetical protein L484_022931 [Morus notabilis])

HSP 1 Score: 62.4 bits (150), Expect = 5.7e-07
Identity = 44/107 (41.12%), Postives = 55/107 (51.40%), Query Frame = 1


Query: 6   ERGRNGGNGRKRQAGA-VAAIFFIWLILVVSRMRLSSAA-VKGVNGRALTKSTVLHRKTH 65
           + G     G+    G  VAA FF W+IL+ S +  SSAA V   NGR   +S    RK  
Sbjct: 4   KEGERSRRGKGSHGGVKVAATFFFWVILIFSHLSFSSAAKVLHRNGRLYRQSPP--RKAR 63

Query: 66  IFEMEEV-FKPPAGFKVHGGGENDDVVDIIYEDDKRVVHTGPNPLHN 110
             + +   F  P        G +D   DI+Y DDKR+VHTGPNPLHN
Sbjct: 64  FVDTKTASFHAPLSPANSINGASDP--DILYGDDKRLVHTGPNPLHN 106

[Close]

BLAST of Lsi04G011690 vs. NCBI nr
Match: gi|590696420|ref|XP_007045160.1| (Clavata3/esr-related 16, putative [Theobroma cacao])

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-06
Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 1


Query: 14  GRKRQAGAVAAIFFIWLILVVSRMRLSSAAVKGVNGRALTKSTVLHRKTHIFEMEEVFKP 73
           GR R + A AA+FF+W+I + S+  L  A V    G    +S    RK   F+      P
Sbjct: 12  GRSRCSVARAALFFLWIIFIFSQFGLHFA-VHEEAGHQYFRSPP--RKARFFDTASFHAP 71

Query: 74  PAGFKVHGGGENDDVVDIIYEDDKRVVHTGPNPLHN 110
            +      G E D   D +Y DDKR+VHTGPNPLHN
Sbjct: 72  SSSV----GNEGDP--DTLYGDDKRIVHTGPNPLHN 98

The following BLAST results are available for this feature:

BLAST of Lsi04G011690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G011690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIX6_CUCSA	6.5e-50	90.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G060150 PE=4 SV=1	[more]
V4UGP5_9ROSI	5.0e-10	41.96	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017256mg PE=4 SV=1	[more]
A0A067FB56_CITSI	8.5e-10	44.33	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048706mg PE=4 S...	[more]
W9QTS0_9ROSA	4.0e-07	41.12	Uncharacterized protein OS=Morus notabilis GN=L484_022931 PE=4 SV=1	[more]
A0A061E9D9_THECC	1.5e-06	40.63	Clavata3/esr-related 16, putative OS=Theobroma cacao GN=TCM_010891 PE=4 SV=1	[more]

BLAST of Lsi04G011690 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01505.1	7.9e-07	39.77	CLAVATA3/ESR-RELATED 16	[more]

BLAST of Lsi04G011690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708173\|ref\|XP_011656136.1\|	9.3e-50	90.83	PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus]	[more]
gi\|567911845\|ref\|XP_006448236.1\|	7.2e-10	41.96	hypothetical protein CICLE_v10017256mg [Citrus clementina]	[more]
gi\|641845738\|gb\|KDO64624.1\|	1.2e-09	44.33	hypothetical protein CISIN_1g048706mg, partial [Citrus sinensis]	[more]
gi\|703087805\|ref\|XP_010093369.1\|	5.7e-07	41.12	hypothetical protein L484_022931 [Morus notabilis]	[more]
gi\|590696420\|ref\|XP_007045160.1\|	2.2e-06	40.63	Clavata3/esr-related 16, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048731	system development

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G011690.1	Lsi04G011690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34545:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16-RELATED	coord: 1..109 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G011690	Csa5G060150	Cucumber (Chinese Long) v2	culsiB370
Lsi04G011690	CSPI05G01420	Wild cucumber (PI 183967)	cpilsiB374
Lsi04G011690	Cucsa.261730	Cucumber (Gy14) v1	cgylsiB426
Lsi04G011690	CmaCh04G009910	Cucurbita maxima (Rimu)	cmalsiB679
Lsi04G011690	CmoCh04G010690	Cucurbita moschata (Rifu)	cmolsiB672
Lsi04G011690	Cla007507	Watermelon (97103) v1	lsiwmB308
Lsi04G011690	MELO3C018297	Melon (DHL92) v3.5.1	lsimeB284
Lsi04G011690	ClCG07G006770	Watermelon (Charleston Gray)	lsiwcgB296
Lsi04G011690	Cla97C07G134480	Watermelon (97103) v2	lsiwmbB297
Lsi04G011690	Bhi07G000236	Wax gourd	lsiwgoB389
Lsi04G011690	Cp4.1LG01g07790	Cucurbita pepo (Zucchini)	cpelsiB361
Lsi04G011690	Carg00105	Silver-seed gourd	carlsiB610
Lsi04G011690	CsaV3_5G015410	Cucumber (Chinese Long) v3	cuclsiB395

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G011690	Silver-seed gourd	carlsiB159
Lsi04G011690	Cucurbita maxima (Rimu)	cmalsiB680
Lsi04G011690	Cucurbita moschata (Rifu)	cmolsiB673
Lsi04G011690	Cucurbita pepo (Zucchini)	cpelsiB362
Lsi04G011690	Cucumber (Gy14) v2	cgyblsiB339
Lsi04G011690	Melon (DHL92) v3.6.1	lsimedB298