ClCG07G006770 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG07G006770
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	CLAVATA3/ESR-RELATED 16 LENGTH=103
Location	CG_Chr07 : 13503485 .. 13503811 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTGGGTGTAGAAAGAGGAAGAAACGGCGGTAACGGAAGGACGCAAGCCGGAGCAGTGGCGGCACTTTTCTTCATATGGCTTATTTTGGTGGTGTCTCGAATGAGATTATCGTCCGCTGCCGTTAAAGAGGTTAACGGCCGGACGTTAACCAAATCCACCGCCCTTCACCGGAAGGCTCACATTTTCGAAACGGAAGAGATCTTTAAACCGCCAGCCGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTGCAGACATTATATACGAAGATGATAAACGGGTGGTCCACACCGGCCCAAATCCGCTTCACAACTAG

mRNA sequence

ATGAGAGTGGGTGTAGAAAGAGGAAGAAACGGCGGTAACGGAAGGACGCAAGCCGGAGCAGTGGCGGCACTTTTCTTCATATGGCTTATTTTGGTGGTGTCTCGAATGAGATTATCGTCCGCTGCCGTTAAAGAGGTTAACGGCCGGACGTTAACCAAATCCACCGCCCTTCACCGGAAGGCTCACATTTTCGAAACGGAAGAGATCTTTAAACCGCCAGCCGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTGCAGACATTATATACGAAGATGATAAACGGGTGGTCCACACCGGCCCAAATCCGCTTCACAACTAG

Coding sequence (CDS)

ATGAGAGTGGGTGTAGAAAGAGGAAGAAACGGCGGTAACGGAAGGACGCAAGCCGGAGCAGTGGCGGCACTTTTCTTCATATGGCTTATTTTGGTGGTGTCTCGAATGAGATTATCGTCCGCTGCCGTTAAAGAGGTTAACGGCCGGACGTTAACCAAATCCACCGCCCTTCACCGGAAGGCTCACATTTTCGAAACGGAAGAGATCTTTAAACCGCCAGCCGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTGCAGACATTATATACGAAGATGATAAACGGGTGGTCCACACCGGCCCAAATCCGCTTCACAACTAG

Protein sequence

MRVGVERGRNGGNGRTQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKAHIFETEEIFKPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN

Homology

[Close]

BLAST of ClCG07G006770 vs. Swiss-Prot
Match: CLE16_ARATH (CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana GN=CLE16 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.1e-06
Identity = 35/94 (37.23%), Postives = 46/94 (48.94%), Query Frame = 1


Query: 16  TQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKA-HIFETEEIFKPPA 75
           T     AA+FF   I V ++  +SS+A+   +        +L RKA H  E      P A
Sbjct: 16  TSTTGYAAVFFCG-IFVFAQFGISSSALFAPD-----HYPSLPRKAGHFHEMASFQAPKA 75

Query: 76  GFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
                G    ++  D +Y+DDKR+VHTGPNPLHN
Sbjct: 76  TVSFTGQRREEENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of ClCG07G006770 vs. TrEMBL
Match: A0A0A0KIX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G060150 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 2.7e-48
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 1


Query: 1   MRVGVERGRNGGNGRT-QAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHR 60
           MRVGVERGRNGG GR  +AGAVAA+FFIWLILVVSRMRLSSAA KEVNGR LTKST LHR
Sbjct: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KAHIFETEEIFKPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
           K HIFETEE+FKPPAGFKVHGGGENDDV DI+YEDDKRV+HTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of ClCG07G006770 vs. TrEMBL
Match: V4UGP5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017256mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-10
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 1


Query: 12  GNGRTQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKAHIFETEEIFK 71
           G  R  AGA AA FF W+IL+ S + L  A   +  G   T S+   RK   F TE  F 
Sbjct: 14  GRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSARKTRSFNTESTFH 73

Query: 72  --PPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
             PP+   +    E D+    +YEDDKR++HTGPNPLHN
Sbjct: 74  APPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of ClCG07G006770 vs. TrEMBL
Match: A0A067FB56_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048706mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-10
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 1


Query: 12  GNGRTQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKAHIFETEEIFK 71
           G  R  AGA AA FF W+IL+ S + L  A   +  G   T S+   RK   F TE  F 
Sbjct: 25  GRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSARKTRSFNTESTFH 84

Query: 72  --PPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
             PP+   +    E D+    +YEDDKR++HTGPNPLHN
Sbjct: 85  APPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

[Close]

BLAST of ClCG07G006770 vs. TrEMBL
Match: W9QTS0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022931 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-09
Identity = 48/105 (45.71%), Postives = 57/105 (54.29%), Query Frame = 1


Query: 6   ERGRNGGNGRTQAGAVAALFFIWLILVVSRMRLSSAA-VKEVNGRTLTKSTALHRKAHIF 65
           ER R G  G      VAA FF W+IL+ S +  SSAA V   NGR   +S    RKA   
Sbjct: 7   ERSRRG-KGSHGGVKVAATFFFWVILIFSHLSFSSAAKVLHRNGRLYRQSPP--RKARFV 66

Query: 66  ETEEI-FKPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
           +T+   F  P        G +D   DI+Y DDKR+VHTGPNPLHN
Sbjct: 67  DTKTASFHAPLSPANSINGASDP--DILYGDDKRLVHTGPNPLHN 106

[Close]

BLAST of ClCG07G006770 vs. TrEMBL
Match: U5G801_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s13000g PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-09
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 1


Query: 2   RVGVERGRNGGNGRTQAGAVAALFFI-WLILVVSRMRLSSAAVKEVNGRTLTKSTALHRK 61
           +VGV   R    GR  +GA AA+ F+ W++L+++++ L  A   E  G+ L KS  L RK
Sbjct: 71  KVGVAAAR----GRRYSGAKAAIIFLFWILLILAQLGLLIAFGHEETGK-LVKS--LPRK 130

Query: 62  AHIFETEEIFKPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
           A  FET     PP+  +     + D   D +YEDDKR++HTGPNPLHN
Sbjct: 131 ARFFETR-FHAPPSQDQPLDIDKGDP--DTVYEDDKRIIHTGPNPLHN 168

[Close]

BLAST of ClCG07G006770 vs. TAIR10
Match: AT2G01505.1 (AT2G01505.1 CLAVATA3/ESR-RELATED 16)

HSP 1 Score: 51.2 bits (121), Expect = 4.6e-07
Identity = 35/94 (37.23%), Postives = 46/94 (48.94%), Query Frame = 1


Query: 16  TQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKA-HIFETEEIFKPPA 75
           T     AA+FF   I V ++  +SS+A+   +        +L RKA H  E      P A
Sbjct: 16  TSTTGYAAVFFCG-IFVFAQFGISSSALFAPD-----HYPSLPRKAGHFHEMASFQAPKA 75

Query: 76  GFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
                G    ++  D +Y+DDKR+VHTGPNPLHN
Sbjct: 76  TVSFTGQRREEENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of ClCG07G006770 vs. NCBI nr
Match: gi|778708173|ref|XP_011656136.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 3.9e-48
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 1


Query: 1   MRVGVERGRNGGNGRT-QAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHR 60
           MRVGVERGRNGG GR  +AGAVAA+FFIWLILVVSRMRLSSAA KEVNGR LTKST LHR
Sbjct: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KAHIFETEEIFKPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
           K HIFETEE+FKPPAGFKVHGGGENDDV DI+YEDDKRV+HTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of ClCG07G006770 vs. NCBI nr
Match: gi|567911845|ref|XP_006448236.1| (hypothetical protein CICLE_v10017256mg [Citrus clementina])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 1


Query: 12  GNGRTQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKAHIFETEEIFK 71
           G  R  AGA AA FF W+IL+ S + L  A   +  G   T S+   RK   F TE  F 
Sbjct: 14  GRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSARKTRSFNTESTFH 73

Query: 72  --PPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
             PP+   +    E D+    +YEDDKR++HTGPNPLHN
Sbjct: 74  APPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of ClCG07G006770 vs. NCBI nr
Match: gi|641845738|gb|KDO64624.1| (hypothetical protein CISIN_1g048706mg, partial [Citrus sinensis])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 1


Query: 12  GNGRTQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKAHIFETEEIFK 71
           G  R  AGA AA FF W+IL+ S + L  A   +  G   T S+   RK   F TE  F 
Sbjct: 25  GRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSARKTRSFNTESTFH 84

Query: 72  --PPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
             PP+   +    E D+    +YEDDKR++HTGPNPLHN
Sbjct: 85  APPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

[Close]

BLAST of ClCG07G006770 vs. NCBI nr
Match: gi|703087805|ref|XP_010093369.1| (hypothetical protein L484_022931 [Morus notabilis])

HSP 1 Score: 68.6 bits (166), Expect = 7.9e-09
Identity = 48/105 (45.71%), Postives = 57/105 (54.29%), Query Frame = 1


Query: 6   ERGRNGGNGRTQAGAVAALFFIWLILVVSRMRLSSAA-VKEVNGRTLTKSTALHRKAHIF 65
           ER R G  G      VAA FF W+IL+ S +  SSAA V   NGR   +S    RKA   
Sbjct: 7   ERSRRG-KGSHGGVKVAATFFFWVILIFSHLSFSSAAKVLHRNGRLYRQSPP--RKARFV 66

Query: 66  ETEEI-FKPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
           +T+   F  P        G +D   DI+Y DDKR+VHTGPNPLHN
Sbjct: 67  DTKTASFHAPLSPANSINGASDP--DILYGDDKRLVHTGPNPLHN 106

[Close]

BLAST of ClCG07G006770 vs. NCBI nr
Match: gi|566183704|ref|XP_006379765.1| (hypothetical protein POPTR_0008s13000g, partial [Populus trichocarpa])

HSP 1 Score: 68.6 bits (166), Expect = 7.9e-09
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 1


Query: 2   RVGVERGRNGGNGRTQAGAVAALFFI-WLILVVSRMRLSSAAVKEVNGRTLTKSTALHRK 61
           +VGV   R    GR  +GA AA+ F+ W++L+++++ L  A   E  G+ L KS  L RK
Sbjct: 71  KVGVAAAR----GRRYSGAKAAIIFLFWILLILAQLGLLIAFGHEETGK-LVKS--LPRK 130

Query: 62  AHIFETEEIFKPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
           A  FET     PP+  +     + D   D +YEDDKR++HTGPNPLHN
Sbjct: 131 ARFFETR-FHAPPSQDQPLDIDKGDP--DTVYEDDKRIIHTGPNPLHN 168

The following BLAST results are available for this feature:

BLAST of ClCG07G006770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLE16_ARATH	8.1e-06	37.23	CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana GN=CLE16 PE=2 SV=1	[more]

BLAST of ClCG07G006770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIX6_CUCSA	2.7e-48	88.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G060150 PE=4 SV=1	[more]
V4UGP5_9ROSI	8.5e-10	43.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017256mg PE=4 SV=1	[more]
A0A067FB56_CITSI	8.5e-10	43.43	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048706mg PE=4 S...	[more]
W9QTS0_9ROSA	5.5e-09	45.71	Uncharacterized protein OS=Morus notabilis GN=L484_022931 PE=4 SV=1	[more]
U5G801_POPTR	5.5e-09	42.59	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s13000g P...	[more]

BLAST of ClCG07G006770 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01505.1	4.6e-07	37.23	CLAVATA3/ESR-RELATED 16	[more]

BLAST of ClCG07G006770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708173\|ref\|XP_011656136.1\|	3.9e-48	88.07	PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus]	[more]
gi\|567911845\|ref\|XP_006448236.1\|	1.2e-09	43.43	hypothetical protein CICLE_v10017256mg [Citrus clementina]	[more]
gi\|641845738\|gb\|KDO64624.1\|	1.2e-09	43.43	hypothetical protein CISIN_1g048706mg, partial [Citrus sinensis]	[more]
gi\|703087805\|ref\|XP_010093369.1\|	7.9e-09	45.71	hypothetical protein L484_022931 [Morus notabilis]	[more]
gi\|566183704\|ref\|XP_006379765.1\|	7.9e-09	42.59	hypothetical protein POPTR_0008s13000g, partial [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0048731	system development

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G006770.1	ClCG07G006770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34545:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16-RELATED	coord: 1..108 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG07G006770	Csa5G060150	Cucumber (Chinese Long) v2	cuwcgB407
ClCG07G006770	MELO3C018297	Melon (DHL92) v3.5.1	mewcgB068
ClCG07G006770	Cla007507	Watermelon (97103) v1	wcgwmB376
ClCG07G006770	Cla97C07G134480	Watermelon (97103) v2	wcgwmbB307
ClCG07G006770	Bhi07G000236	Wax gourd	wcgwgoB596
ClCG07G006770	CSPI05G01420	Wild cucumber (PI 183967)	cpiwcgB425
ClCG07G006770	Cucsa.261730	Cucumber (Gy14) v1	cgywcgB460
ClCG07G006770	CmaCh04G009910	Cucurbita maxima (Rimu)	cmawcgB673
ClCG07G006770	CmoCh04G010690	Cucurbita moschata (Rifu)	cmowcgB675
ClCG07G006770	Lsi04G011690	Bottle gourd (USVL1VR-Ls)	lsiwcgB296
ClCG07G006770	Cp4.1LG01g07790	Cucurbita pepo (Zucchini)	cpewcgB409
ClCG07G006770	MELO3C018297.2	Melon (DHL92) v3.6.1	medwcgB066
ClCG07G006770	Carg00105	Silver-seed gourd	carwcgB0651
ClCG07G006770	CsaV3_5G015410	Cucumber (Chinese Long) v3	cucwcgB427

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG07G006770	Cucurbita maxima (Rimu)	cmawcgB674
ClCG07G006770	Cucurbita moschata (Rifu)	cmowcgB676
ClCG07G006770	Cucurbita pepo (Zucchini)	cpewcgB410
ClCG07G006770	Cucumber (Gy14) v2	cgybwcgB373
ClCG07G006770	Silver-seed gourd	carwcgB0171