MELO3C018297.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018297.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Clavata3/ESR (CLE) gene family member
Location	chr10 : 20601058 .. 20601764 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTCTCTCATTTTCATTCTTCAACATTTTTGCTTCCATTTCCAAAACTCTTCAAAATCACAAAAACAAAAGAAGAACAATTTTCTTTTTTAGAGGGTGTGGTGGGTTTGTGGCAATGAGAGTGGGTGTGGAGAGAGGGAGAAACGGCGGTAAGGGAAGGAAACGGGAGGCGGGAGCAGTGGCGGCAATTTTCTTCATATGGCTAATTTTGTTGGTGTCTCGAATGAGATTATCGTCTGCCGCCATTAAAGAAGTTAACGTCCGGGCGTTAGCAAAATCCACCGTTCTCCACCGTAAGACTCATATTTTCGAGACGGAGGAGGTGTTTAAACCGCCAGCCGGTTTTAAAGTTCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGGTGATCCATACCGGCCCAAATCCACTTCACAATTAGGCCCAATAAGACCCAACAAAAACATTCCCATATCTGTTTATTCTTCTACAGATCAATTTCTTCTGTAAGAGAAGCTTTCAATTATTATTATTTTTTTAATTATTTTGAAGTTTGAAGAGAAATAAGATCATTAGGCTAGCCTTTTTTTAGGAAAAAAAAAAAAGAAAAGAAAAAGCTAGTGATAATGCTCTTGTTTCTTCTTCTTATCTTGTTTTTTTATTTTTTATTTTTGTTTTCCTTAGTCTCTTCTCTTGCATGTGTT

mRNA sequence

GTCTCTCTCATTTTCATTCTTCAACATTTTTGCTTCCATTTCCAAAACTCTTCAAAATCACAAAAACAAAAGAAGAACAATTTTCTTTTTTAGAGGGTGTGGTGGGTTTGTGGCAATGAGAGTGGGTGTGGAGAGAGGGAGAAACGGCGGTAAGGGAAGGAAACGGGAGGCGGGAGCAGTGGCGGCAATTTTCTTCATATGGCTAATTTTGTTGGTGTCTCGAATGAGATTATCGTCTGCCGCCATTAAAGAAGTTAACGTCCGGGCGTTAGCAAAATCCACCGTTCTCCACCGTAAGACTCATATTTTCGAGACGGAGGAGGTGTTTAAACCGCCAGCCGGTTTTAAAGTTCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGGTGATCCATACCGGCCCAAATCCACTTCACAATTAGGCCCAATAAGACCCAACAAAAACATTCCCATATCTGTTTATTCTTCTACAGATCAATTTCTTCTGTAAGAGAAGCTTTCAATTATTATTATTTTTTTAATTATTTTGAAGTTTGAAGAGAAATAAGATCATTAGGCTAGCCTTTTTTTAGGAAAAAAAAAAAAGAAAAGAAAAAGCTAGTGATAATGCTCTTGTTTCTTCTTCTTATCTTGTTTTTTTATTTTTTATTTTTGTTTTCCTTAGTCTCTTCTCTTGCATGTGTT

Coding sequence (CDS)

TCTCTCTCATTTTCATTCTTCAACATTTTTGCTTCCATTTCCAAAACTCTTCAAAATCACAAAAACAAAAGAAGAACAATTTTCTTTTTTAGAGGGTGTGGTGGGTTTGTGGCAATGAGAGTGGGTGTGGAGAGAGGGAGAAACGGCGGTAAGGGAAGGAAACGGGAGGCGGGAGCAGTGGCGGCAATTTTCTTCATATGGCTAATTTTGTTGGTGTCTCGAATGAGATTATCGTCTGCCGCCATTAAAGAAGTTAACGTCCGGGCGTTAGCAAAATCCACCGTTCTCCACCGTAAGACTCATATTTTCGAGACGGAGGAGGTGTTTAAACCGCCAGCCGGTTTTAAAGTTCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGGTGATCCATACCGGCCCAAATCCACTTCACAATTAG

Protein sequence

SLSFSFFNIFASISKTLQNHKNKRRTIFFFRGCGGFVAMRVGVERGRNGGKGRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN

Homology

[Close]

BLAST of MELO3C018297.2 vs. NCBI nr
Match: XP_011656136.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus] >KGN49680.1 hypothetical protein Csa_5G060150 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 2.0e-35
Identity = 82/109 (75.23%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 39  MRVGVERGRNGGKGRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHR 98
           MRVGVERGRN                      +VSRMRLSSAA KEVN R L KSTVLHR
Sbjct: 1   MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 99  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 148
           KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of MELO3C018297.2 vs. NCBI nr
Match: OAY25247.1 (hypothetical protein MANES_17G078600 [Manihot esculenta])

HSP 1 Score: 67.8 bits (164), Expect = 3.5e-08
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 50  GKGRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHRKTHIFETEEVF 109
           G+ R    G  A +F +W++L+++++ L  A  +E     L KS  L RK  + ET+   
Sbjct: 12  GRRRNVAGGRAAIVFLLWVLLILAQLGLFYAVHEETG--KLVKS--LPRKVRLLETQSFD 71

Query: 110 KPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 148
            PP+  KV    + +   D VY DDKR+IHTGPNPLHN
Sbjct: 72  APPS--KVQSSMDIEGDPDTVYGDDKRIIHTGPNPLHN 103

[Close]

BLAST of MELO3C018297.2 vs. NCBI nr
Match: GAV63124.1 (hypothetical protein CFOL_v3_06645 [Cephalotus follicularis])

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 31/97 (31.96%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 51  KGRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHRKTHIFETEEVFK 110
           +GR++ AGA+A +F +W++L+++++ L  A  +++  R L    +  +   + ET+ +  
Sbjct: 10  RGRRQAAGAIAVLFLMWVVLVLAQLGLFFAFHEDIG-RLLTSHQLPRKARFLLETQSLHA 69

Query: 111 PPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 148
           PP   ++    + +     +Y D+KR+IHTGPNPLHN
Sbjct: 70  PPKPAQL---VDYEGHPSNLYADEKRIIHTGPNPLHN 102

[Close]

BLAST of MELO3C018297.2 vs. NCBI nr
Match: EOY00992.1 (Clavata3/esr-related 16, putative [Theobroma cacao])

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 37/96 (38.54%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 52  GRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHRKTHIFETEEVFKP 111
           GR R + A AA+FF+W+I + S+  L  A  +E   +         RK   F+T     P
Sbjct: 12  GRSRCSVARAALFFLWIIFIFSQFGLHFAVHEEAGHQYFRSPP---RKARFFDTASFHAP 71

Query: 112 PAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 148
            +      G E D   D +Y DDKR++HTGPNPLHN
Sbjct: 72  SSSV----GNEGD--PDTLYGDDKRIVHTGPNPLHN 98

[Close]

BLAST of MELO3C018297.2 vs. NCBI nr
Match: PNT15890.1 (hypothetical protein POPTR_010G111200v3 [Populus trichocarpa])

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 43/113 (38.05%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 40  RVGVERGRNGGKGRKREAGA--VAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLH 99
           +VGVE  R      +R AGA   A IF  W++L+++++ +     +E +    +    L 
Sbjct: 6   KVGVEAAR-----ARRYAGAARAAIIFLFWILLILAQLGVFLVVHEETDKPVKS----LP 65

Query: 100 RKTHIFETEEVFKPP---AGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 148
           RK  +FET  V   P       + GG       D VYEDDKR IHTGPNPLHN
Sbjct: 66  RKARVFETGSVHASPNQDQPVNIDGGD-----PDAVYEDDKRTIHTGPNPLHN 104

[Close]

BLAST of MELO3C018297.2 vs. TAIR10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16)

HSP 1 Score: 47.4 bits (111), Expect = 9.0e-06
Identity = 29/87 (33.33%), Postives = 41/87 (47.13%), Query Frame = 0


Query: 61  AAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHRKTHIFETEEVFKPPAGFKVHGG 120
           AA+FF  + +       SSA     +  +L +     +  H  E      P A     G 
Sbjct: 22  AAVFFCGIFVFAQFGISSSALFAPDHYPSLPR-----KAGHFHEMASFQAPKATVSFTGQ 81

Query: 121 GENDDVTDIVYEDDKRVIHTGPNPLHN 148
              ++  D VY+DDKR++HTGPNPLHN
Sbjct: 82  RREEENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of MELO3C018297.2 vs. TAIR10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17)

HSP 1 Score: 42.4 bits (98), Expect = 2.9e-04
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 0


Query: 128 DIVYEDDKRVIHTGPNPLHN 148
           D +Y DDKRV+HTGPNPLHN
Sbjct: 80  DDIYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of MELO3C018297.2 vs. Swiss-Prot
Match: sp|Q8S8M2|CLE16_ARATH (CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=CLE16 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-04
Identity = 29/87 (33.33%), Postives = 41/87 (47.13%), Query Frame = 0


Query: 61  AAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHRKTHIFETEEVFKPPAGFKVHGG 120
           AA+FF  + +       SSA     +  +L +     +  H  E      P A     G 
Sbjct: 22  AAVFFCGIFVFAQFGISSSALFAPDHYPSLPR-----KAGHFHEMASFQAPKATVSFTGQ 81

Query: 121 GENDDVTDIVYEDDKRVIHTGPNPLHN 148
              ++  D VY+DDKR++HTGPNPLHN
Sbjct: 82  RREEENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of MELO3C018297.2 vs. TrEMBL
Match: tr|A0A0A0KIX6|A0A0A0KIX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-35
Identity = 82/109 (75.23%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 39  MRVGVERGRNGGKGRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHR 98
           MRVGVERGRN                      +VSRMRLSSAA KEVN R L KSTVLHR
Sbjct: 1   MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 99  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 148
           KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of MELO3C018297.2 vs. TrEMBL
Match: tr|A0A2C9U5W2|A0A2C9U5W2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G078600 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 50  GKGRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHRKTHIFETEEVF 109
           G+ R    G  A +F +W++L+++++ L  A  +E     L KS  L RK  + ET+   
Sbjct: 12  GRRRNVAGGRAAIVFLLWVLLILAQLGLFYAVHEETG--KLVKS--LPRKVRLLETQSFD 71

Query: 110 KPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 148
            PP+  KV    + +   D VY DDKR+IHTGPNPLHN
Sbjct: 72  APPS--KVQSSMDIEGDPDTVYGDDKRIIHTGPNPLHN 103

[Close]

BLAST of MELO3C018297.2 vs. TrEMBL
Match: tr|A0A1Q3B5H3|A0A1Q3B5H3_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06645 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.6e-07
Identity = 31/97 (31.96%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 51  KGRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHRKTHIFETEEVFK 110
           +GR++ AGA+A +F +W++L+++++ L  A  +++  R L    +  +   + ET+ +  
Sbjct: 10  RGRRQAAGAIAVLFLMWVVLVLAQLGLFFAFHEDIG-RLLTSHQLPRKARFLLETQSLHA 69

Query: 111 PPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 148
           PP   ++    + +     +Y D+KR+IHTGPNPLHN
Sbjct: 70  PPKPAQL---VDYEGHPSNLYADEKRIIHTGPNPLHN 102

[Close]

BLAST of MELO3C018297.2 vs. TrEMBL
Match: tr|A0A061E9D9|A0A061E9D9_THECC (Clavata3/esr-related 16, putative OS=Theobroma cacao OX=3641 GN=TCM_010891 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 37/96 (38.54%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 52  GRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHRKTHIFETEEVFKP 111
           GR R + A AA+FF+W+I + S+  L  A  +E   +         RK   F+T     P
Sbjct: 12  GRSRCSVARAALFFLWIIFIFSQFGLHFAVHEEAGHQYFRSPP---RKARFFDTASFHAP 71

Query: 112 PAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 148
            +      G E D   D +Y DDKR++HTGPNPLHN
Sbjct: 72  SSSV----GNEGD--PDTLYGDDKRIVHTGPNPLHN 98

[Close]

BLAST of MELO3C018297.2 vs. TrEMBL
Match: tr|B9HW54|B9HW54_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G111200v3 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 43/113 (38.05%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 40  RVGVERGRNGGKGRKREAGA--VAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLH 99
           +VGVE  R      +R AGA   A IF  W++L+++++ +     +E +    +    L 
Sbjct: 6   KVGVEAAR-----ARRYAGAARAAIIFLFWILLILAQLGVFLVVHEETDKPVKS----LP 65

Query: 100 RKTHIFETEEVFKPP---AGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 148
           RK  +FET  V   P       + GG       D VYEDDKR IHTGPNPLHN
Sbjct: 66  RKARVFETGSVHASPNQDQPVNIDGGD-----PDAVYEDDKRTIHTGPNPLHN 104

The following BLAST results are available for this feature:

BLAST of MELO3C018297.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656136.1	2.0e-35	75.23	PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus] >KGN4968...	[more]
OAY25247.1	3.5e-08	39.80	hypothetical protein MANES_17G078600 [Manihot esculenta]	[more]
GAV63124.1	1.1e-06	31.96	hypothetical protein CFOL_v3_06645 [Cephalotus follicularis]	[more]
EOY00992.1	1.9e-06	38.54	Clavata3/esr-related 16, putative [Theobroma cacao]	[more]
PNT15890.1	1.9e-06	38.05	hypothetical protein POPTR_010G111200v3 [Populus trichocarpa]	[more]

BLAST of MELO3C018297.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01505.1	9.0e-06	33.33	CLAVATA3/ESR-RELATED 16	[more]
AT1G70895.1	2.9e-04	80.00	CLAVATA3/ESR-RELATED 17	[more]

BLAST of MELO3C018297.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8S8M2\|CLE16_ARATH	1.6e-04	33.33	CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=CLE16 P...	[more]

BLAST of MELO3C018297.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIX6\|A0A0A0KIX6_CUCSA	1.3e-35	75.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1	[more]
tr\|A0A2C9U5W2\|A0A2C9U5W2_MANES	2.3e-08	39.80	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G078600 PE=4 SV=...	[more]
tr\|A0A1Q3B5H3\|A0A1Q3B5H3_CEPFO	7.6e-07	31.96	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06645 PE=4...	[more]
tr\|A0A061E9D9\|A0A061E9D9_THECC	1.3e-06	38.54	Clavata3/esr-related 16, putative OS=Theobroma cacao OX=3641 GN=TCM_010891 PE=4 ...	[more]
tr\|B9HW54\|B9HW54_POPTR	1.3e-06	38.05	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G111200v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048731	system development

Vocabulary: **INTERPRO**
Term	Definition
IPR033249	CLE_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018297.2.1	MELO3C018297.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	FAMILY NOT NAMED	coord: 45..147
None	No IPR available	PANTHER	PTHR34545:SF2	CLAVATA3/ESR CLE -RELATED PROTEIN 16-RELATED	coord: 45..147

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018297.2	Csa5G060150	Cucumber (Chinese Long) v2	cumedB364
MELO3C018297.2	CSPI05G01420	Wild cucumber (PI 183967)	cpimedB368
MELO3C018297.2	Cucsa.261730	Cucumber (Gy14) v1	cgymedB436
MELO3C018297.2	CmaCh04G009910	Cucurbita maxima (Rimu)	cmamedB748
MELO3C018297.2	CmoCh04G010690	Cucurbita moschata (Rifu)	cmomedB741
MELO3C018297.2	Cp4.1LG01g07790	Cucurbita pepo (Zucchini)	cpemedB444
MELO3C018297.2	ClCG07G006770	Watermelon (Charleston Gray)	medwcgB066
MELO3C018297.2	Cla97C07G134480	Watermelon (97103) v2	medwmbB063
MELO3C018297.2	Bhi07G000236	Wax gourd	medwgoB086
MELO3C018297.2	Carg00105	Silver-seed gourd	carmedB0673
MELO3C018297.2	CsaV3_5G015410	Cucumber (Chinese Long) v3	cucmedB380

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018297.2	Cucumber (Gy14) v2	cgybmedB323
MELO3C018297.2	Cucurbita maxima (Rimu)	cmamedB746
MELO3C018297.2	Cucurbita moschata (Rifu)	cmomedB743
MELO3C018297.2	Cucurbita pepo (Zucchini)	cpemedB445
MELO3C018297.2	Bottle gourd (USVL1VR-Ls)	lsimedB298
MELO3C018297.2	Silver-seed gourd	carmedB0187