Carg00105 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00105
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CLAVATA3/ESR-RELATED 16
Location	Cucurbita_argyrosperma_scaffold_001 : 494708 .. 495031 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTGGGTGTAGAGAGAGGAAGAAACGGCGGTAACGGAACCAAGCGGCAGGCGGGAGGAGCAGTCGTCGCCGCCGCAATTTTCTTCATTTGTCTTATTTTCGTGCTCTCTCGGATGACACTTTCCTCCGCTGCCGTTAGAGGTGTTAACGTCCCCACGTTAACTAAATCCGCCACCCTTCACCGGAAGACCCACGTTTTCGAAACGGAGGAGGTCTTTAAACCACCGGCCGGTTTCAAAATCCACGCTGACGTTGCGGACATTGTATACGAGGATGATAAACGGGTGGTCCATACCGGCCCAAATCCGCTTCACAATTAG

mRNA sequence

ATGAGAGTGGGTGTAGAGAGAGGAAGAAACGGCGGTAACGGAACCAAGCGGCAGGCGGGAGGAGCAGTCGTCGCCGCCGCAATTTTCTTCATTTGTCTTATTTTCGTGCTCTCTCGGATGACACTTTCCTCCGCTGCCGTTAGAGGTGTTAACGTCCCCACGTTAACTAAATCCGCCACCCTTCACCGGAAGACCCACGTTTTCGAAACGGAGGAGGTCTTTAAACCACCGGCCGGTTTCAAAATCCACGCTGACGTTGCGGACATTGTATACGAGGATGATAAACGGGTGGTCCATACCGGCCCAAATCCGCTTCACAATTAG

Coding sequence (CDS)

ATGAGAGTGGGTGTAGAGAGAGGAAGAAACGGCGGTAACGGAACCAAGCGGCAGGCGGGAGGAGCAGTCGTCGCCGCCGCAATTTTCTTCATTTGTCTTATTTTCGTGCTCTCTCGGATGACACTTTCCTCCGCTGCCGTTAGAGGTGTTAACGTCCCCACGTTAACTAAATCCGCCACCCTTCACCGGAAGACCCACGTTTTCGAAACGGAGGAGGTCTTTAAACCACCGGCCGGTTTCAAAATCCACGCTGACGTTGCGGACATTGTATACGAGGATGATAAACGGGTGGTCCATACCGGCCCAAATCCGCTTCACAATTAG

Protein sequence

MRVGVERGRNGGNGTKRQAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSATLHRKTHVFETEEVFKPPAGFKIHADVADIVYEDDKRVVHTGPNPLHN

Homology

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BLAST of Carg00105 vs. NCBI nr
Match: XP_011656136.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus] >KGN49680.1 hypothetical protein Csa_5G060150 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 3.4e-24
Identity = 79/112 (70.54%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 1   MRVGVERGRNGGNGTKRQXXXXXXXXXXXXICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
           MRVGVERGR   N     XXXXXXXXXXXX     V+SRM LSSAA + VN   LTKS  
Sbjct: 1   MRVGVERGR---NXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTV 60

Query: 61  LHRKTHVFETEEVFKPPAGFKIHA-----DVADIVYEDDKRVVHTGPNPLHN 108
           LHRKTH+FETEEVFKPPAGFK+H      DV DIVYEDDKRV+HTGPNPLHN
Sbjct: 61  LHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

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BLAST of Carg00105 vs. TAIR10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16)

HSP 1 Score: 50.8 bits (120), Expect = 5.9e-07
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 32  CLIFVLSRMTLSSAAVRGV-NVPTLTKSATLHRKTHVFETEEVFKPPAGFKIHADVADIV 91
           C IFV ++  +SS+A+    + P+L + A    +   F+  +      G +   +  D V
Sbjct: 27  CGIFVFAQFGISSSALFAPDHYPSLPRKAGHFHEMASFQAPKATVSFTGQRREEENRDEV 86

Query: 92  YEDDKRVVHTGPNPLHN 108
           Y+DDKR+VHTGPNPLHN
Sbjct: 87  YKDDKRLVHTGPNPLHN 103

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BLAST of Carg00105 vs. TAIR10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17)

HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 0


Query: 88  DIVYEDDKRVVHTGPNPLHN 108
           D +Y DDKRVVHTGPNPLHN
Sbjct: 80  DDIYGDDKRVVHTGPNPLHN 99

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BLAST of Carg00105 vs. Swiss-Prot
Match: sp|Q8S8M2|CLE16_ARATH (CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=CLE16 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-05
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 32  CLIFVLSRMTLSSAAVRGV-NVPTLTKSATLHRKTHVFETEEVFKPPAGFKIHADVADIV 91
           C IFV ++  +SS+A+    + P+L + A    +   F+  +      G +   +  D V
Sbjct: 27  CGIFVFAQFGISSSALFAPDHYPSLPRKAGHFHEMASFQAPKATVSFTGQRREEENRDEV 86

Query: 92  YEDDKRVVHTGPNPLHN 108
           Y+DDKR+VHTGPNPLHN
Sbjct: 87  YKDDKRLVHTGPNPLHN 103

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BLAST of Carg00105 vs. TrEMBL
Match: tr|A0A0A0KIX6|A0A0A0KIX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-24
Identity = 79/112 (70.54%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 1   MRVGVERGRNGGNGTKRQXXXXXXXXXXXXICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60
           MRVGVERGR   N     XXXXXXXXXXXX     V+SRM LSSAA + VN   LTKS  
Sbjct: 1   MRVGVERGR---NXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTV 60

Query: 61  LHRKTHVFETEEVFKPPAGFKIHA-----DVADIVYEDDKRVVHTGPNPLHN 108
           LHRKTH+FETEEVFKPPAGFK+H      DV DIVYEDDKRV+HTGPNPLHN
Sbjct: 61  LHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Carg00105 vs. TrEMBL
Match: tr|A0A2C9U5W2|A0A2C9U5W2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G078600 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.4e-04
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 60  TLHRKTHVFETEEVFKPPAGFKIHADV---ADIVYEDDKRVVHTGPNPLHN 108
           +L RK  + ET+    PP+  +   D+    D VY DDKR++HTGPNPLHN
Sbjct: 53  SLPRKVRLLETQSFDAPPSKVQSSMDIEGDPDTVYGDDKRIIHTGPNPLHN 103

[Close]

BLAST of Carg00105 vs. TrEMBL
Match: tr|B9HW54|B9HW54_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G111200v3 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.7e-04
Identity = 27/51 (52.94%), Postives = 29/51 (56.86%), Query Frame = 0


Query: 60  TLHRKTHVFETEEVFKPP---AGFKIHADVADIVYEDDKRVVHTGPNPLHN 108
           +L RK  VFET  V   P       I     D VYEDDKR +HTGPNPLHN
Sbjct: 54  SLPRKARVFETGSVHASPNQDQPVNIDGGDPDAVYEDDKRTIHTGPNPLHN 104

The following BLAST results are available for this feature:

BLAST of Carg00105 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656136.1	3.4e-24	70.54	PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus] >KGN4968...	[more]

BLAST of Carg00105 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01505.1	5.9e-07	37.66	CLAVATA3/ESR-RELATED 16	[more]
AT1G70895.1	1.6e-04	85.00	CLAVATA3/ESR-RELATED 17	[more]

BLAST of Carg00105 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8S8M2\|CLE16_ARATH	1.1e-05	37.66	CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=CLE16 P...	[more]

BLAST of Carg00105 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIX6\|A0A0A0KIX6_CUCSA	2.2e-24	70.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1	[more]
tr\|A0A2C9U5W2\|A0A2C9U5W2_MANES	7.4e-04	47.06	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G078600 PE=4 SV=...	[more]
tr\|B9HW54\|B9HW54_POPTR	9.7e-04	52.94	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G111200v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048731	system development

Vocabulary: **INTERPRO**
Term	Definition
IPR033249	CLE_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00105-RA	Carg00105-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	FAMILY NOT NAMED	coord: 14..107
None	No IPR available	PANTHER	PTHR34545:SF2	CLAVATA3/ESR CLE -RELATED PROTEIN 16-RELATED	coord: 14..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00105	Csa5G060150	Cucumber (Chinese Long) v2	carcuB0693
Carg00105	MELO3C018297	Melon (DHL92) v3.5.1	carmeB0662
Carg00105	ClCG07G006770	Watermelon (Charleston Gray)	carwcgB0651
Carg00105	CSPI05G01420	Wild cucumber (PI 183967)	carcpiB0705
Carg00105	CmaCh04G009910	Cucurbita maxima (Rimu)	carcmaB0948
Carg00105	CmoCh04G010690	Cucurbita moschata (Rifu)	carcmoB0923
Carg00105	Lsi04G011690	Bottle gourd (USVL1VR-Ls)	carlsiB610
Carg00105	Cp4.1LG01g07790	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00105	MELO3C018297.2	Melon (DHL92) v3.6.1	carmedB0673
Carg00105	CsaV3_5G015410	Cucumber (Chinese Long) v3	carcucB0707
Carg00105	Cla97C07G134480	Watermelon (97103) v2	carwmbB0700
Carg00105	Bhi07G000236	Wax gourd	carwgoB0785

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00105	Cucurbita maxima (Rimu)	carcmaB0949
Carg00105	Cucurbita moschata (Rifu)	carcmoB0924
Carg00105	Cucurbita pepo (Zucchini)	carcpeB0939
Carg00105	Melon (DHL92) v3.5.1	carmeB0657
Carg00105	Melon (DHL92) v3.6.1	carmedB0667
Carg00105	Silver-seed gourd	carcarB214