CsaV3_5G015410.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G015410.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 12763392 .. 12764319 (+)
Sequence length303
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTGGGTGTGGAGAGAGGAAGAAACGGCGGTAAGGGAAGGAAAGGGGAAGCAGGAGCCGTGGCTGCAATTTTCTTCATATGGCTAATTTTGGTGGTGTCTCGAATGAGATTATCGTCTGCCGCCAGTAAAGAAGTTAACGGCCGGATGTTAACAAAATCCACCGTCCTCCACCGTAAGACTCATATTTTCGAAACGGAGGAGGTGTTTAAACCGCCAGCGGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGGTGATCCATACCGGCCCAAATCCACTTCACAATTAAGCCCAATACGGCCCAACAACAACATTCCCATATCTGTTTATTCTTCTACAGATCAATTTCTTCTGTAAGAGAAGCTTTCAATTATTACTATTTTCTTTTTAATTATTTAGAAGTTCGAAGAGAAATAAGATCATTAGGCTAGCCTTTTTTAGAAAAATCAAAAACAAAAAGCTAGTGATAATGCTCTTGTTTCTTCTTCTAATATTGTAGTTTTTTTTTTTTTTTTTCTTTTTTACTATTATTTTTTGTTCTCTTGCATGTGTTTTAATTTATTGCTTTTGTAGTTATTTGTCCATCCCTACATTTCTTTTAATTCAAATATTACAGATTTGAATATTTCACATTTAAAACACCACTAACTAAATTGTATATTATTTTAATTTGTTAGAATTTTAAATTTGAATTCTAAAGTAATTGCAACTATTTTTTTTTTAATTTTATCAAAGTTGGCATTTTTGTAAGAAAAATAATTTGTAATTGGATTGACTTAATAGTAGTGATGATAATCATGGATTTACTGGTTCTAATTAAAGTAACTGTGTCTTTGTTTTTACAACTTTCTAATTCATTTCTTTGAAAAATATTTTAGTTAAAGTAG

mRNA sequence

ATGAGAGTGGGTGTGGAGAGAGGAAGAAACGGCGGTAAGGGAAGGAAAGGGGAAGCAGGAGCCGTGGCTGCAATTTTCTTCATATGGCTAATTTTGGTGGTGTCTCGAATGAGATTATCGTCTGCCGCCAGTAAAGAAGTTAACGGCCGGATGTTAACAAAATCCACCGTCCTCCACCGTAAGACTCATATTTTCGAAACGGAGGAGGTGTTTAAACCGCCAGCGGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGTTAAAGTAG

Coding sequence (CDS)

ATGAGAGTGGGTGTGGAGAGAGGAAGAAACGGCGGTAAGGGAAGGAAAGGGGAAGCAGGAGCCGTGGCTGCAATTTTCTTCATATGGCTAATTTTGGTGGTGTCTCGAATGAGATTATCGTCTGCCGCCAGTAAAGAAGTTAACGGCCGGATGTTAACAAAATCCACCGTCCTCCACCGTAAGACTCATATTTTCGAAACGGAGGAGGTGTTTAAACCGCCAGCGGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGTTAAAGTAG

Protein sequence

MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRLK
Homology
[Close]
BLAST of CsaV3_5G015410.1 vs. NCBI nr
Match: XP_011656136.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus] >KGN49680.1 hypothetical protein Csa_5G060150 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 3.2e-32
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR 60
           MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR
Sbjct: 1   MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRL 100
           KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKR+
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRV 99

[Close]
BLAST of CsaV3_5G015410.1 vs. TrEMBL
Match: tr|A0A0A0KIX6|A0A0A0KIX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-32
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR 60
           MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR
Sbjct: 1   MRVGVERGRNXXXXXXXXXXXXXXXXXXXXXXVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRL 100
           KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKR+
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRV 99

The following BLAST results are available for this feature:
BLAST of CsaV3_5G015410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656136.13.2e-3298.99PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus] >KGN4968... [more]
BLAST of CsaV3_5G015410.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015410.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015410.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KIX6|A0A0A0KIX6_CUCSA2.1e-3298.99Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_5G015410CsaV3_5G015410gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G015410.1.exon1CsaV3_5G015410.1.exon1exon
CsaV3_5G015410.1.exon2CsaV3_5G015410.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G015410.1.cds1CsaV3_5G015410.1.cds1CDS
CsaV3_5G015410.1.cds2CsaV3_5G015410.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_5G015410.1CsaV3_5G015410.1-proteinpolypeptide