CsaV3_5G006250 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G006250
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLOB domain-containing protein 1-like
Locationchr5 : 4131728 .. 4133244 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAACTCACCAAAAAAGAGAGAGAAAATATTCTCTCTCCTCTCGCCCCCACATTCTCTCTCTAGAAAATTTTAATTAAATACATATATATATATATATTTTTTTAATTTATGGCTTACGTGGCCAAATGTACTAATAATTCTCCTCCAACTCCCATCAGTGTTAATAATAATCCAAATAATCCTTTATCTTTCTCCCCAATGTCTTCTTCCCCACCCACTTCTCAACCATCCTCCCCTCCGCCCCCTGCGGTGGTTCTCAGCCCCTGCGCTGCCTGTAAGATCCTCCGTCGCCGCTGCGTCGAGAAATGCGTTTTGGCTCCTTATTTCCCTCCCACTGACCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGAGCTAGCAATATCATCAAGTTCCTGCAAGTATGCCCTCCATTTCTTTTCCTTTTTTTTTTTTAATCAAAAGTTTATCATTAGAATCTCCAACTTTCCTACAATGCCCTTTGAAATGGTCTAATATATCTTCTCATATATACTTACTATAATATTCTATATTCTTTTAGATGAGGGATTTTAAAAAAGGAAGAAAAGAAAATCTATTTTTGTTTAGAGTTTAAGGTTAGAAAATTACTATTAGTAATAATGGTAACAAGTTTCTTTGGTATTTCTAAATGTAAGAAAAATATATAAGAGGGGTATAGTTGGATTTAACTTAGAAAAGAAAATGAATTGATTTGATTTGACTTAACTAGGTTTTTTTTACTTTTGATGGGACTTAATTAATGTATCAATTCCCGTAATTGGTGGAATTTTGGTTTAATTAAACTTTCATTTAGGTTAGATTAAAATTTAGTTGAATTTTGATATTGAGAAAAGTTTACAAATTTTGTAGGAGCTTCCCGAGTGCCAAAGAACGGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGTCTGAGAGATCCAGTTTACGGTAGTGCAGGCGCAATTTGCCAACTGCAAAAGCAAGTGAGCGAACTACAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCCAATATGCAGCAACAACAAGCCAACTTACTAGCCTTAATTTGCATGGAAATGAGGCAATCACCGGAGCCTGTTTGGCAGCCGCAACTGGTGGACACTACATGCTTCCTCGATGACGCCACCCTCAGCTCACCATGGGAGCCACTCTGGACGTGATCTGCCCATTCTTTTGCAGTCATATTTAATTTGGATTAGATAAAGGATTTAAGTTAATTAGTTAAATTGTTATAGAAAAATATATACTCTCTAAATATATAATTAGTAATGTCGATGATGATAATAATGTTAATGATTTTAACTTAAATATATGAAAAGGGATCCAAGTTTTTTCCCTTTAAAATTCTGATATTCTTAGTTTCAATGGAGAGAAAGAGAAGTGGAAAAGGAAGAGAAACTGAAAGATGTTGATTTGGACTTTTTAGAAGGTGGTGGTTGTAATTTCATTTACAAGATTTAATTTTTAATGAAAACTCCTTTTGGG

mRNA sequence

ATGGCTTACGTGGCCAAATGTACTAATAATTCTCCTCCAACTCCCATCAGTGTTAATAATAATCCAAATAATCCTTTATCTTTCTCCCCAATGTCTTCTTCCCCACCCACTTCTCAACCATCCTCCCCTCCGCCCCCTGCGGTGGTTCTCAGCCCCTGCGCTGCCTGTAAGATCCTCCGTCGCCGCTGCGTCGAGAAATGCGTTTTGGCTCCTTATTTCCCTCCCACTGACCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGAGCTAGCAATATCATCAAGTTCCTGCAAGAGCTTCCCGAGTGCCAAAGAACGGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGTCTGAGAGATCCAGTTTACGGTAGTGCAGGCGCAATTTGCCAACTGCAAAAGCAAGTGAGCGAACTACAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCCAATATGCAGCAACAACAAGCCAACTTACTAGCCTTAATTTGCATGGAAATGAGGCAATCACCGGAGCCTGTTTGGCAGCCGCAACTGGTGGACACTACATGCTTCCTCGATGACGCCACCCTCAGCTCACCATGGGAGCCACTCTGGACGTGA

Coding sequence (CDS)

ATGGCTTACGTGGCCAAATGTACTAATAATTCTCCTCCAACTCCCATCAGTGTTAATAATAATCCAAATAATCCTTTATCTTTCTCCCCAATGTCTTCTTCCCCACCCACTTCTCAACCATCCTCCCCTCCGCCCCCTGCGGTGGTTCTCAGCCCCTGCGCTGCCTGTAAGATCCTCCGTCGCCGCTGCGTCGAGAAATGCGTTTTGGCTCCTTATTTCCCTCCCACTGACCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGAGCTAGCAATATCATCAAGTTCCTGCAAGAGCTTCCCGAGTGCCAAAGAACGGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGTCTGAGAGATCCAGTTTACGGTAGTGCAGGCGCAATTTGCCAACTGCAAAAGCAAGTGAGCGAACTACAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCCAATATGCAGCAACAACAAGCCAACTTACTAGCCTTAATTTGCATGGAAATGAGGCAATCACCGGAGCCTGTTTGGCAGCCGCAACTGGTGGACACTACATGCTTCCTCGATGACGCCACCCTCAGCTCACCATGGGAGCCACTCTGGACGTGA

Protein sequence

MAYVAKCTNNSPPTPISVNNNPNNPLSFSPMSSSPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT
Homology
[Close]
BLAST of CsaV3_5G006250 vs. NCBI nr
Match: XP_004143693.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0 

Query: 1   MAYVAKCTNNSPPTPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPCAACKILR 60
           MAYVAKCTNNSPPTPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPCAACKILR
Sbjct: 1   MAYVAKCTNNSPPTPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPCAACKILR 60

Query: 61  RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL 120
           RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL
Sbjct: 61  RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL 120

Query: 121 RDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPEPVWQP 180
           RDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPEPVWQP
Sbjct: 121 RDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPEPVWQP 180

Query: 181 QLVDTTCFLDDATLSSPWEPLWT 204
           QLVDTTCFLDDATLSSPWEPLWT
Sbjct: 181 QLVDTTCFLDDATLSSPWEPLWT 203

[Close]
BLAST of CsaV3_5G006250 vs. NCBI nr
Match: XP_008445860.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 5.2e-74
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MAYVAKCTNNSPPTPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPCAACKILR 60
           MAYVAKCTNNSPPTPIS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SPCAACKILR
Sbjct: 1   MAYVAKCTNNSPPTPISFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPCAACKILR 60

Query: 61  RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL 120
           RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL
Sbjct: 61  RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL 120

Query: 121 RDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPEPVWQP 180
           RDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPEPVWQP
Sbjct: 121 RDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPEPVWQP 180

Query: 181 QLVDTTCFLDDATLSSPWEPLWT 204
           QLVDTTCFLDDATLSSPWEPLWT
Sbjct: 181 QLVDTTCFLDDATLSSPWEPLWT 203

[Close]
BLAST of CsaV3_5G006250 vs. NCBI nr
Match: KGN50464.1 (hypothetical protein Csa_5G175870 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 1.2e-65
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 53  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM 112
           CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM
Sbjct: 23  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM 82

Query: 113 VYEANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQ 172
           VYEANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQ
Sbjct: 83  VYEANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQ 142

Query: 173 SPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 204
           SPEPVWQPQLVDTTCFLDDATLSSPWEPLWT
Sbjct: 143 SPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 173

[Close]
BLAST of CsaV3_5G006250 vs. NCBI nr
Match: XP_022988552.1 (LOB domain-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 252.7 bits (644), Expect = 1.1e-63
Identity = 155/203 (76.35%), Postives = 163/203 (80.30%), Query Frame = 0 

Query: 1   MAYVAKCTNNSPPTPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPCAACKILR 60
           MAYVAKCT +SPPTP +                                LSPCAACKILR
Sbjct: 1   MAYVAKCT-SSPPTPTT---LPNPLSSSAATNFVSPPTSQQLSTPVAVVLSPCAACKILR 60

Query: 61  RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL 120
           RRC+EKCVLAPYFPPT+PLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANAR+
Sbjct: 61  RRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARV 120

Query: 121 RDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPEPVWQP 180
           RDPVYGSAGAICQLQ QXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEM+QS EP+W  
Sbjct: 121 RDPVYGSAGAICQLQTQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMKQSAEPIWAS 180

Query: 181 QLVDTTCFLDDATLSSPWEPLWT 204
            L DTTCFLDDATLS+PWEPLWT
Sbjct: 181 HLADTTCFLDDATLSAPWEPLWT 199

[Close]
BLAST of CsaV3_5G006250 vs. NCBI nr
Match: XP_023525482.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.1 bits (632), Expect = 2.7e-62
Identity = 154/203 (75.86%), Postives = 162/203 (79.80%), Query Frame = 0 

Query: 1   MAYVAKCTNNSPPTPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPCAACKILR 60
           MAYVAKCT +SPPTP +                                LSPCAACKILR
Sbjct: 1   MAYVAKCT-SSPPTPTT---LPNPPLSSSATNFVSPPTSQQSSTPVAVVLSPCAACKILR 60

Query: 61  RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL 120
           RRC+EKCVLAPYFPPT+PLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL
Sbjct: 61  RRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL 120

Query: 121 RDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPEPVWQP 180
           RDPVYGSAGAICQLQ QXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEM+QS EP+W  
Sbjct: 121 RDPVYGSAGAICQLQTQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMKQSAEPIWAS 180

Query: 181 QLVDTTCFLDDATLSSPWEPLWT 204
            L DT+ FLDDATLS+PWEPLWT
Sbjct: 181 HLADTSWFLDDATLSAPWEPLWT 199

[Close]
BLAST of CsaV3_5G006250 vs. TAIR10
Match: AT1G07900.1 (LOB domain-containing protein 1)

HSP 1 Score: 165.2 bits (417), Expect = 4.1e-41
Identity = 114/159 (71.70%), Postives = 126/159 (79.25%), Query Frame = 0 

Query: 50  LSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAV 109
           LSPCAACKILRRRC E+CVLAPYFPPTDP KFTIAHRVFGASNIIKFLQELPE QRTDAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 110 SSMVYEANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALIC-M 169
           +SMVYEA AR+RDPVYG AGAI  LQ+ XXXXXXXXXXXXXXXXXXXXXXXX L LI  M
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRXXXXXXXXXXXXXXXXXXXXXXXXXLLELIYNM 150

Query: 170 EMRQSPEPVWQPQLVDTTCFLDDATLSSP----WEPLWT 204
           + +Q  E        +   FL+D + ++     W+PLWT
Sbjct: 151 DQQQKQEQDNMSFESNDLGFLEDKSNTNSSMLWWDPLWT 189

[Close]
BLAST of CsaV3_5G006250 vs. TAIR10
Match: AT2G28500.1 (LOB domain-containing protein 11)

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-40
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0 

Query: 50  LSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAV 109
           LSPCAACKILRRRC +KCVLAPYFPPTDP KFTIAHRVFGASNIIKFLQELPE QRTDAV
Sbjct: 53  LSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 112

Query: 110 SSMVYEANARLRDPVYGSAGAICQLQKQ 138
           +SMVYEA AR+RDPVYG AGAI  LQ+Q
Sbjct: 113 NSMVYEAGARMRDPVYGCAGAIYHLQRQ 140

[Close]
BLAST of CsaV3_5G006250 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-31
Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 0 

Query: 51  SPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 110
           SPCA+CK+LRRRC + C+ APYFPP DP KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 111 SMVYEANARLRDPVYGSAGAICQLQKQ 138
           S+V+EANAR+RDPVYG  GAI  LQ Q
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQ 93

[Close]
BLAST of CsaV3_5G006250 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 132.1 bits (331), Expect = 3.9e-31
Identity = 62/87 (71.26%), Postives = 69/87 (79.31%), Query Frame = 0 

Query: 51  SPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 110
           SPCAACK+LRRRC + CV +PYFP  +P KF   HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 111 SMVYEANARLRDPVYGSAGAICQLQKQ 138
           SMVYEANAR+RDPVYG  GAI  LQ+Q
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQ 98

[Close]
BLAST of CsaV3_5G006250 vs. TAIR10
Match: AT2G40470.1 (LOB domain-containing protein 15)

HSP 1 Score: 125.2 bits (313), Expect = 4.7e-29
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 0 

Query: 50  LSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAV 109
           ++PCAACK+LRRRC ++C  +PYF P +P KF   H+VFGASN+ K L E+PE QR DA 
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query: 110 SSMVYEANARLRDPVYGSAGAICQLQKQ 138
           +S+VYEAN RLRDPVYG  GAI  LQ+Q
Sbjct: 103 NSLVYEANVRLRDPVYGCMGAISALQQQ 130

[Close]
BLAST of CsaV3_5G006250 vs. Swiss-Prot
Match: sp|Q9LQR0|LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.4e-40
Identity = 114/159 (71.70%), Postives = 126/159 (79.25%), Query Frame = 0 

Query: 50  LSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAV 109
           LSPCAACKILRRRC E+CVLAPYFPPTDP KFTIAHRVFGASNIIKFLQELPE QRTDAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 110 SSMVYEANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALIC-M 169
           +SMVYEA AR+RDPVYG AGAI  LQ+ XXXXXXXXXXXXXXXXXXXXXXXX L LI  M
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRXXXXXXXXXXXXXXXXXXXXXXXXXLLELIYNM 150

Query: 170 EMRQSPEPVWQPQLVDTTCFLDDATLSSP----WEPLWT 204
           + +Q  E        +   FL+D + ++     W+PLWT
Sbjct: 151 DQQQKQEQDNMSFESNDLGFLEDKSNTNSSMLWWDPLWT 189

[Close]
BLAST of CsaV3_5G006250 vs. Swiss-Prot
Match: sp|Q9SK08|LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-39
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0 

Query: 50  LSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAV 109
           LSPCAACKILRRRC +KCVLAPYFPPTDP KFTIAHRVFGASNIIKFLQELPE QRTDAV
Sbjct: 53  LSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 112

Query: 110 SSMVYEANARLRDPVYGSAGAICQLQKQ 138
           +SMVYEA AR+RDPVYG AGAI  LQ+Q
Sbjct: 113 NSMVYEAGARMRDPVYGCAGAIYHLQRQ 140

[Close]
BLAST of CsaV3_5G006250 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-30
Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 0 

Query: 51  SPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 110
           SPCA+CK+LRRRC + C+ APYFPP DP KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 111 SMVYEANARLRDPVYGSAGAICQLQKQ 138
           S+V+EANAR+RDPVYG  GAI  LQ Q
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQ 93

[Close]
BLAST of CsaV3_5G006250 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.0e-30
Identity = 62/87 (71.26%), Postives = 69/87 (79.31%), Query Frame = 0 

Query: 51  SPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 110
           SPCAACK+LRRRC + CV +PYFP  +P KF   HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 111 SMVYEANARLRDPVYGSAGAICQLQKQ 138
           SMVYEANAR+RDPVYG  GAI  LQ+Q
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQ 98

[Close]
BLAST of CsaV3_5G006250 vs. Swiss-Prot
Match: sp|Q8L5T5|LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 8.5e-28
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 0 

Query: 50  LSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAV 109
           ++PCAACK+LRRRC ++C  +PYF P +P KF   H+VFGASN+ K L E+PE QR DA 
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query: 110 SSMVYEANARLRDPVYGSAGAICQLQKQ 138
           +S+VYEAN RLRDPVYG  GAI  LQ+Q
Sbjct: 103 NSLVYEANVRLRDPVYGCMGAISALQQQ 130

[Close]
BLAST of CsaV3_5G006250 vs. TrEMBL
Match: tr|A0A1S3BDP1|A0A1S3BDP1_CUCME (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103488750 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 3.4e-74
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 

Query: 1   MAYVAKCTNNSPPTPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPCAACKILR 60
           MAYVAKCTNNSPPTPIS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SPCAACKILR
Sbjct: 1   MAYVAKCTNNSPPTPISFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPCAACKILR 60

Query: 61  RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL 120
           RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL
Sbjct: 61  RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARL 120

Query: 121 RDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPEPVWQP 180
           RDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPEPVWQP
Sbjct: 121 RDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPEPVWQP 180

Query: 181 QLVDTTCFLDDATLSSPWEPLWT 204
           QLVDTTCFLDDATLSSPWEPLWT
Sbjct: 181 QLVDTTCFLDDATLSSPWEPLWT 203

[Close]
BLAST of CsaV3_5G006250 vs. TrEMBL
Match: tr|A0A0A0KNK9|A0A0A0KNK9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175870 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 7.6e-66
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 53  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM 112
           CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM
Sbjct: 23  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM 82

Query: 113 VYEANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQ 172
           VYEANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQ
Sbjct: 83  VYEANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQ 142

Query: 173 SPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 204
           SPEPVWQPQLVDTTCFLDDATLSSPWEPLWT
Sbjct: 143 SPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 173

[Close]
BLAST of CsaV3_5G006250 vs. TrEMBL
Match: tr|A0A2C9VMK5|A0A2C9VMK5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G102200 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.1e-54
Identity = 132/158 (83.54%), Postives = 141/158 (89.24%), Query Frame = 0 

Query: 50  LSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAV 109
           LSPCAACKILRRRCVEKCVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPE QR DAV
Sbjct: 59  LSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAV 118

Query: 110 SSMVYEANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICME 169
           SSMVYEANAR+RDPVYG AGAICQLQKQ  XXXXXXXXXXXXXXXXXXXXXX +ALICME
Sbjct: 119 SSMVYEANARIRDPVYGCAGAICQLQKQVNXXXXXXXXXXXXXXXXXXXXXXLVALICME 178

Query: 170 MRQS---PEPVW-QPQLVDTTCFLDDATLSSPWEPLWT 204
           M QS    EP++ Q Q +DT+CFLDD  L++PWEPLWT
Sbjct: 179 MTQSHHYQEPIFQQQQYIDTSCFLDDTNLATPWEPLWT 216

[Close]
BLAST of CsaV3_5G006250 vs. TrEMBL
Match: tr|V7BFQ1|V7BFQ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G092000g PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.3e-52
Identity = 135/155 (87.10%), Postives = 141/155 (90.97%), Query Frame = 0 

Query: 51  SPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 110
           SPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPE QR DAVS
Sbjct: 64  SPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVS 123

Query: 111 SMVYEANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEM 170
           SMVYEANAR+RDPVYG AGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXX+ALICMEM
Sbjct: 124 SMVYEANARIRDPVYGCAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXVALICMEM 183

Query: 171 RQSPEP-VWQPQ-LVDTTCFLDDATLSSPWEPLWT 204
            QS E  V QPQ LVD +CF++D T  + WEPLWT
Sbjct: 184 SQSQEQHVVQPQPLVDMSCFIEDNTFGTAWEPLWT 218

[Close]
BLAST of CsaV3_5G006250 vs. TrEMBL
Match: tr|I3T451|I3T451_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 8.2e-52
Identity = 133/160 (83.12%), Postives = 140/160 (87.50%), Query Frame = 0 

Query: 50  LSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAV 109
           +SPCAACK+LRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPE QR DAV
Sbjct: 64  VSPCAACKVLRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAV 123

Query: 110 SSMVYEANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICME 169
           SSMVYEANAR+RDPVYG AGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICME
Sbjct: 124 SSMVYEANARIRDPVYGCAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICME 183

Query: 170 MRQSPEP-----VWQPQL-VDTTCFLDDATLSSPWEPLWT 204
           M Q+  P     + QPQ  VD +CFL+D    S WEPLWT
Sbjct: 184 MTQTQSPEQQQNIIQPQTHVDMSCFLEDNNFGSAWEPLWT 223

The following BLAST results are available for this feature:
BLAST of CsaV3_5G006250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143693.11.4e-74100.00PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus][more]
XP_008445860.15.2e-7499.01PREDICTED: LOB domain-containing protein 1-like [Cucumis melo][more]
KGN50464.11.2e-65100.00hypothetical protein Csa_5G175870 [Cucumis sativus][more]
XP_022988552.11.1e-6376.35LOB domain-containing protein 1-like [Cucurbita maxima][more]
XP_023525482.12.7e-6275.86LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_5G006250 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07900.14.1e-4171.70LOB domain-containing protein 1[more]
AT2G28500.12.0e-4087.50LOB domain-containing protein 11[more]
AT2G30130.11.0e-3168.97Lateral organ boundaries (LOB) domain family protein[more]
AT1G31320.13.9e-3171.26LOB domain-containing protein 4[more]
AT2G40470.14.7e-2962.50LOB domain-containing protein 15[more]
BLAST of CsaV3_5G006250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LQR0|LBD1_ARATH7.4e-4071.70LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=... [more]
sp|Q9SK08|LBD11_ARATH3.7e-3987.50LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S... [more]
sp|Q8LBW3|LBD12_ARATH1.8e-3068.97LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S... [more]
sp|Q9SHE9|LBD4_ARATH7.0e-3071.26LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=... [more]
sp|Q8L5T5|LBD15_ARATH8.5e-2862.50LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S... [more]
BLAST of CsaV3_5G006250 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BDP1|A0A1S3BDP1_CUCME3.4e-7499.01LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103488750 PE=... [more]
tr|A0A0A0KNK9|A0A0A0KNK9_CUCSA7.6e-66100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175870 PE=4 SV=1[more]
tr|A0A2C9VMK5|A0A2C9VMK5_MANES5.1e-5483.54Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G102200 PE=4 SV=... [more]
tr|V7BFQ1|V7BFQ1_PHAVU1.3e-5287.10Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G092000g PE=4 ... [more]
tr|I3T451|I3T451_LOTJA8.2e-5283.13Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005951 carbamoyl-phosphate synthase complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016874 ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G006250.1CsaV3_5G006250.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 203..203
NoneNo IPR availableCOILSCoilCoilcoord: 131..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 32..203
NoneNo IPR availablePANTHERPTHR31301:SF14SUBFAMILY NOT NAMEDcoord: 32..203
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 52..149
e-value: 4.5E-40
score: 136.1
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 51..152
score: 25.539

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G006250CSPI05G16950Wild cucumber (PI 183967)cpicucB293
CsaV3_5G006250CSPI05G08810Wild cucumber (PI 183967)cpicucB285
CsaV3_5G006250Cucsa.166030Cucumber (Gy14) v1cgycucB264
CsaV3_5G006250CmaCh04G012420Cucurbita maxima (Rimu)cmacucB0884
CsaV3_5G006250CmaCh15G004330Cucurbita maxima (Rimu)cmacucB0360
CsaV3_5G006250CmaCh04G002720Cucurbita maxima (Rimu)cmacucB0883
CsaV3_5G006250CmoCh04G002770Cucurbita moschata (Rifu)cmocucB0873
CsaV3_5G006250CmoCh15G004440Cucurbita moschata (Rifu)cmocucB0357
CsaV3_5G006250CmoCh04G013150Cucurbita moschata (Rifu)cmocucB0872
CsaV3_5G006250Cp4.1LG13g09830Cucurbita pepo (Zucchini)cpecucB0223
CsaV3_5G006250Cp4.1LG01g10320Cucurbita pepo (Zucchini)cpecucB0541
CsaV3_5G006250Cp4.1LG01g04270Cucurbita pepo (Zucchini)cpecucB0542
CsaV3_5G006250CsGy5G006200Cucumber (Gy14) v2cgybcucB232
CsaV3_5G006250Carg02065Silver-seed gourdcarcucB0882
CsaV3_5G006250Carg25670Silver-seed gourdcarcucB0892
CsaV3_5G006250Cla020073Watermelon (97103) v1cucwmB454
CsaV3_5G006250Cla004725Watermelon (97103) v1cucwmB391
CsaV3_5G006250MELO3C011730Melon (DHL92) v3.5.1cucmeB370
CsaV3_5G006250MELO3C025504Melon (DHL92) v3.5.1cucmeB365
CsaV3_5G006250ClCG02G013910Watermelon (Charleston Gray)cucwcgB402
CsaV3_5G006250Lsi04G008120Bottle gourd (USVL1VR-Ls)cuclsiB387
CsaV3_5G006250Lsi02G016970Bottle gourd (USVL1VR-Ls)cuclsiB374
CsaV3_5G006250MELO3C011730.2Melon (DHL92) v3.6.1cucmedB362
CsaV3_5G006250MELO3C025504.2Melon (DHL92) v3.6.1cucmedB359
CsaV3_5G006250Cla97C02G039560Watermelon (97103) v2cucwmbB383
CsaV3_5G006250Bhi07G000881Wax gourdcucwgoB525
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_5G006250CsaV3_5G025960Cucumber (Chinese Long) v3cuccucB196
CsaV3_5G006250CsaV3_6G021580Cucumber (Chinese Long) v3cuccucB202
The following block(s) are covering this gene:

None