Carg02065 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02065
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	LOB domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_003 : 2002621 .. 2003621 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTCCAAACCACCCCTTATCTTACTCCCCAATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACTTCTCAGCCGTCGTCTCCCCCGCCGCCTACGGTGATCCTCAGCCCATGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCATATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGTATGCCCAAAAATTTAATTTTTTTTATTAAATTAATTCACACCCACATTTTGAAATTCCCCAATTTGTCCTTCCAATCTATTTTTGTTTAGAGATTAAGGTTACGAAATTATTATTAGTAATTCCATGTATTGTAGAAAAAAAAAACATTAATTAGTTAACTTTTTTTTGGTATTTTTAAAAATAAACAAAAGGGTATAGTCGGATTTAACTAAAAAAAAAAAAAAAAAGAAATGAGTTGATTTGACTTAACTGGGTTTGACTTTTGATGGGACATAATCCCGTAATCAATGCAACTTTGGTCTCTCTAATTTTCCTCTAAACCTTATTATTAAACAACTAATTAAAGATTAACTTTTTCTTAATACTTGCAGGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGTCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAAGTGGCTAATATGCAGCACCAACAAGCCAACTTATTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCGTCGACACTACCTGCTTCCTCGATGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGA

mRNA sequence

ATGGCTTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTCCAAACCACCCCTTATCTTACTCCCCAATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACTTCTCAGCCGTCGTCTCCCCCGCCGCCTACGGTGATCCTCAGCCCATGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCATATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGTCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAAGTGGCTAATATGCAGCACCAACAAGCCAACTTATTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCGTCGACACTACCTGCTTCCTCGATGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGA

Coding sequence (CDS)

ATGGCTTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTCCAAACCACCCCTTATCTTACTCCCCAATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACTTCTCAGCCGTCGTCTCCCCCGCCGCCTACGGTGATCCTCAGCCCATGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCATATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGTCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAAGTGGCTAATATGCAGCACCAACAAGCCAACTTATTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCGTCGACACTACCTGCTTCCTCGATGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGA

Protein sequence

MAYLAKCTNAPSTPITVPNHPLSYSPISSSSAATTNFGSPPTSQPSSPPPPTVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMRQSPDPVWPPQLVDTTCFLDDAALSSPWEPLWT

Homology

[Close]

BLAST of Carg02065 vs. NCBI nr
Match: XP_023532963.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MAYLAKCTNAPSTPITVPNHPLSYSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAYLAKCTNAPSTPITVPNHPLSYSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAYLAKCTNAPSTPITVPNHPLSYSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE
Sbjct: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120

Query: 121 ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPD 180
           ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPD
Sbjct: 121 ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPD 180

Query: 181 PVWPPQLVDTTCFLDDAALSSPWEPLWT 209
           PVWPPQLVDTTCFLDDAALSSPWEPLWT
Sbjct: 181 PVWPPQLVDTTCFLDDAALSSPWEPLWT 208

[Close]

BLAST of Carg02065 vs. NCBI nr
Match: XP_022957188.1 (LOB domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 295.8 bits (756), Expect = 1.1e-76
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 0


Query: 1   MAYLAKCTNAPSTPITVPNHPLSYSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M YLAKCTNAPSTPITVPNHPLSYSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MXYLAKCTNAPSTPITVPNHPLSYSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE
Sbjct: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120

Query: 121 ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPD 180
           ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPD
Sbjct: 121 ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPD 180

Query: 181 PVWPPQLVDTTCFLDDAALSSPWEPLWT 209
           PVWPPQLVDTTCFLDDAALSSPWEPLWT
Sbjct: 181 PVWPPQLVDTTCFLDDAALSSPWEPLWT 208

[Close]

BLAST of Carg02065 vs. NCBI nr
Match: XP_022999523.1 (LOB domain-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 290.4 bits (742), Expect = 4.8e-75
Identity = 205/208 (98.56%), Postives = 206/208 (99.04%), Query Frame = 0


Query: 1   MAYLAKCTNAPSTPITVPNHPLSYSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAYLAKCTNAPSTPITV NHPLSYSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAYLAKCTNAPSTPITVSNHPLSYSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE
Sbjct: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120

Query: 121 ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPD 180
           A+ARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPD
Sbjct: 121 AHARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPD 180

Query: 181 PVWPPQLVDTTCFLDDAALSSPWEPLWT 209
           PVWPPQL DTTCFLDDAALSSPWEPLWT
Sbjct: 181 PVWPPQLPDTTCFLDDAALSSPWEPLWT 208

[Close]

BLAST of Carg02065 vs. NCBI nr
Match: XP_004143693.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 2.3e-61
Identity = 181/209 (86.60%), Postives = 187/209 (89.47%), Query Frame = 0


Query: 1   MAYLAKCT-NAPSTPITVPNHPLSYSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAY+AKCT N+P TPI+            XXXXXXXXXXXXXXXXXXXXXXXXXX     
Sbjct: 1   MAYVAKCTNNSPPTPIS------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPCA 60

Query: 61  XCKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVY 120
            CKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVY
Sbjct: 61  ACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVY 120

Query: 121 EANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSP 180
           EANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSP
Sbjct: 121 EANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSP 180

Query: 181 DPVWPPQLVDTTCFLDDAALSSPWEPLWT 209
           +PVW PQLVDTTCFLDDA LSSPWEPLWT
Sbjct: 181 EPVWQPQLVDTTCFLDDATLSSPWEPLWT 203

[Close]

BLAST of Carg02065 vs. NCBI nr
Match: XP_008445860.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 3.0e-61
Identity = 182/209 (87.08%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MAYLAKCT-NAPSTPITVPNHPLSYSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAY+AKCT N+P TPI+            XXXXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 1   MAYVAKCTNNSPPTPISF------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPCA 60

Query: 61  XCKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVY 120
            CKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVY
Sbjct: 61  ACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVY 120

Query: 121 EANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSP 180
           EANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSP
Sbjct: 121 EANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSP 180

Query: 181 DPVWPPQLVDTTCFLDDAALSSPWEPLWT 209
           +PVW PQLVDTTCFLDDA LSSPWEPLWT
Sbjct: 181 EPVWQPQLVDTTCFLDDATLSSPWEPLWT 203

[Close]

BLAST of Carg02065 vs. TAIR10
Match: AT2G28500.1 (LOB domain-containing protein 11)

HSP 1 Score: 147.9 bits (372), Expect = 6.9e-36
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRC +KCVLAPYFPP++P KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYE
Sbjct: 59  CKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYE 118

Query: 121 ANARLRDPVYGSAGAICQLQKQ 143
           A AR+RDPVYG AGAI  LQ+Q
Sbjct: 119 AGARMRDPVYGCAGAIYHLQRQ 140

[Close]

BLAST of Carg02065 vs. TAIR10
Match: AT1G07900.1 (LOB domain-containing protein 1)

HSP 1 Score: 147.5 bits (371), Expect = 9.0e-36
Identity = 105/153 (68.63%), Postives = 120/153 (78.43%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRC E+CVLAPYFPP++P KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYE
Sbjct: 37  CKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYE 96

Query: 121 ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALIC-MEMRQSP 180
           A AR+RDPVYG AGAI  LQ+ XXXXXXXXXXXXXXXXXXXXXXXX L LI  M+ +Q  
Sbjct: 97  AEARIRDPVYGCAGAIYHLQRXXXXXXXXXXXXXXXXXXXXXXXXXLLELIYNMDQQQKQ 156

Query: 181 DPVWPPQLVDTTCFLDDAALSSP----WEPLWT 209
           +        +   FL+D + ++     W+PLWT
Sbjct: 157 EQDNMSFESNDLGFLEDKSNTNSSMLWWDPLWT 189

[Close]

BLAST of Carg02065 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-28
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CK+LRRRC + C+ APYFPP +P KF I H+VFGASN+ K LQELP  QR DAV+S+V+E
Sbjct: 12  CKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFE 71

Query: 121 ANARLRDPVYGSAGAICQLQKQ 143
           ANAR+RDPVYG  GAI  LQ Q
Sbjct: 72  ANARVRDPVYGCVGAISYLQNQ 93

[Close]

BLAST of Carg02065 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-28
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVSSMVYE
Sbjct: 17  CKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYE 76

Query: 121 ANARLRDPVYGSAGAICQLQKQ 143
           ANAR+RDPVYG  GAI  LQ+Q
Sbjct: 77  ANARVRDPVYGCVGAISSLQQQ 98

[Close]

BLAST of Carg02065 vs. TAIR10
Match: AT2G40470.1 (LOB domain-containing protein 15)

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-26
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CK+LRRRC ++C  +PYF P EP KF   H+VFGASN+ K L E+PE QR DA +S+VYE
Sbjct: 49  CKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYE 108

Query: 121 ANARLRDPVYGSAGAICQLQKQ 143
           AN RLRDPVYG  GAI  LQ+Q
Sbjct: 109 ANVRLRDPVYGCMGAISALQQQ 130

[Close]

BLAST of Carg02065 vs. Swiss-Prot
Match: sp|Q9SK08|LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-34
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRC +KCVLAPYFPP++P KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYE
Sbjct: 59  CKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYE 118

Query: 121 ANARLRDPVYGSAGAICQLQKQ 143
           A AR+RDPVYG AGAI  LQ+Q
Sbjct: 119 AGARMRDPVYGCAGAIYHLQRQ 140

[Close]

BLAST of Carg02065 vs. Swiss-Prot
Match: sp|Q9LQR0|LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 105/153 (68.63%), Postives = 120/153 (78.43%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRC E+CVLAPYFPP++P KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYE
Sbjct: 37  CKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYE 96

Query: 121 ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALIC-MEMRQSP 180
           A AR+RDPVYG AGAI  LQ+ XXXXXXXXXXXXXXXXXXXXXXXX L LI  M+ +Q  
Sbjct: 97  AEARIRDPVYGCAGAIYHLQRXXXXXXXXXXXXXXXXXXXXXXXXXLLELIYNMDQQQKQ 156

Query: 181 DPVWPPQLVDTTCFLDDAALSSP----WEPLWT 209
           +        +   FL+D + ++     W+PLWT
Sbjct: 157 EQDNMSFESNDLGFLEDKSNTNSSMLWWDPLWT 189

[Close]

BLAST of Carg02065 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-27
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CK+LRRRC + C+ APYFPP +P KF I H+VFGASN+ K LQELP  QR DAV+S+V+E
Sbjct: 12  CKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFE 71

Query: 121 ANARLRDPVYGSAGAICQLQKQ 143
           ANAR+RDPVYG  GAI  LQ Q
Sbjct: 72  ANARVRDPVYGCVGAISYLQNQ 93

[Close]

BLAST of Carg02065 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.3e-27
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVSSMVYE
Sbjct: 17  CKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYE 76

Query: 121 ANARLRDPVYGSAGAICQLQKQ 143
           ANAR+RDPVYG  GAI  LQ+Q
Sbjct: 77  ANARVRDPVYGCVGAISSLQQQ 98

[Close]

BLAST of Carg02065 vs. Swiss-Prot
Match: sp|Q8L5T5|LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-25
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CK+LRRRC ++C  +PYF P EP KF   H+VFGASN+ K L E+PE QR DA +S+VYE
Sbjct: 49  CKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYE 108

Query: 121 ANARLRDPVYGSAGAICQLQKQ 143
           AN RLRDPVYG  GAI  LQ+Q
Sbjct: 109 ANVRLRDPVYGCMGAISALQQQ 130

[Close]

BLAST of Carg02065 vs. TrEMBL
Match: tr|A0A1S3BDP1|A0A1S3BDP1_CUCME (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103488750 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.0e-61
Identity = 182/209 (87.08%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MAYLAKCT-NAPSTPITVPNHPLSYSPISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAY+AKCT N+P TPI+            XXXXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 1   MAYVAKCTNNSPPTPISF------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPCA 60

Query: 61  XCKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVY 120
            CKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVY
Sbjct: 61  ACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVY 120

Query: 121 EANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSP 180
           EANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSP
Sbjct: 121 EANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSP 180

Query: 181 DPVWPPQLVDTTCFLDDAALSSPWEPLWT 209
           +PVW PQLVDTTCFLDDA LSSPWEPLWT
Sbjct: 181 EPVWQPQLVDTTCFLDDATLSSPWEPLWT 203

[Close]

BLAST of Carg02065 vs. TrEMBL
Match: tr|A0A0A0KNK9|A0A0A0KNK9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175870 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.6e-61
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE
Sbjct: 26  CKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 85

Query: 121 ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPD 180
           ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSP+
Sbjct: 86  ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPE 145

Query: 181 PVWPPQLVDTTCFLDDAALSSPWEPLWT 209
           PVW PQLVDTTCFLDDA LSSPWEPLWT
Sbjct: 146 PVWQPQLVDTTCFLDDATLSSPWEPLWT 173

[Close]

BLAST of Carg02065 vs. TrEMBL
Match: tr|A0A2C9VMK5|A0A2C9VMK5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G102200 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.6e-49
Identity = 124/152 (81.58%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRCVEKCVLAPYFPP+EP KFTIAHRVFGASNIIKFLQELPE QR DAVSSMVYE
Sbjct: 65  CKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYE 124

Query: 121 ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQS-- 180
           ANAR+RDPVYG AGAICQLQKQ  XXXXXXXXXXXXXXXXXXXXXX +ALICMEM QS  
Sbjct: 125 ANARIRDPVYGCAGAICQLQKQVNXXXXXXXXXXXXXXXXXXXXXXLVALICMEMTQSHH 184

Query: 181 -PDPVW-PPQLVDTTCFLDDAALSSPWEPLWT 209
             +P++   Q +DT+CFLDD  L++PWEPLWT
Sbjct: 185 YQEPIFQQQQYIDTSCFLDDTNLATPWEPLWT 216

[Close]

BLAST of Carg02065 vs. TrEMBL
Match: tr|A0A061FNS0|A0A061FNS0_THECC (LOB domain-containing protein 1 OS=Theobroma cacao OX=3641 GN=TCM_043081 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.3e-48
Identity = 119/150 (79.33%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRCVEKCVLAPYFPP+EP KFTIAHRVFGASNIIK LQELPE QR DAVSSMVYE
Sbjct: 71  CKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKSLQELPESQRADAVSSMVYE 130

Query: 121 ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPD 180
           A+AR+RDPVYG AGAICQLQKQ  XXXXXXXXXXXXXXXXXX     LALICMEM QS +
Sbjct: 131 ASARIRDPVYGCAGAICQLQKQVSXXXXXXXXXXXXXXXXXXQQANLLALICMEMTQSKE 190

Query: 181 PV--WPPQLVDTTCFLDDAALSSPWEPLWT 209
           P     P  +DT+CFLDD+ L+S WEPLWT
Sbjct: 191 PTSQQQPYSIDTSCFLDDSNLASAWEPLWT 220

[Close]

BLAST of Carg02065 vs. TrEMBL
Match: tr|V7BFQ1|V7BFQ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G092000g PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 124/150 (82.67%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 61  CKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPE QR DAVSSMVYE
Sbjct: 69  CKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYE 128

Query: 121 ANARLRDPVYGSAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXLALICMEMRQSPD 180
           ANAR+RDPVYG AGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXX+ALICMEM QS +
Sbjct: 129 ANARIRDPVYGCAGAICQLQKQXXXXXXXXXXXXXXXXXXXXXXXXXVALICMEMSQSQE 188

Query: 181 P--VWPPQLVDTTCFLDDAALSSPWEPLWT 209
              V P  LVD +CF++D    + WEPLWT
Sbjct: 189 QHVVQPQPLVDMSCFIEDNTFGTAWEPLWT 218

The following BLAST results are available for this feature:

BLAST of Carg02065 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532963.1	3.0e-77	100.00	LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022957188.1	1.1e-76	99.52	LOB domain-containing protein 1-like [Cucurbita moschata]	[more]
XP_022999523.1	4.8e-75	98.56	LOB domain-containing protein 1-like [Cucurbita maxima]	[more]
XP_004143693.1	2.3e-61	86.60	PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]	[more]
XP_008445860.1	3.0e-61	87.08	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]

BLAST of Carg02065 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28500.1	6.9e-36	84.15	LOB domain-containing protein 11	[more]
AT1G07900.1	9.0e-36	68.63	LOB domain-containing protein 1	[more]
AT2G30130.1	1.8e-28	67.07	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	2.4e-28	70.73	LOB domain-containing protein 4	[more]
AT2G40470.1	1.7e-26	63.41	LOB domain-containing protein 15	[more]

BLAST of Carg02065 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SK08\|LBD11_ARATH	1.2e-34	84.15	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
sp\|Q9LQR0\|LBD1_ARATH	1.6e-34	68.63	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
sp\|Q8LBW3\|LBD12_ARATH	3.3e-27	67.07	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
sp\|Q9SHE9\|LBD4_ARATH	4.3e-27	70.73	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
sp\|Q8L5T5\|LBD15_ARATH	3.1e-25	63.41	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]

BLAST of Carg02065 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BDP1\|A0A1S3BDP1_CUCME	2.0e-61	87.08	LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103488750 PE=...	[more]
tr\|A0A0A0KNK9\|A0A0A0KNK9_CUCSA	2.6e-61	96.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175870 PE=4 SV=1	[more]
tr\|A0A2C9VMK5\|A0A2C9VMK5_MANES	8.6e-49	81.58	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G102200 PE=4 SV=...	[more]
tr\|A0A061FNS0\|A0A061FNS0_THECC	4.3e-48	79.33	LOB domain-containing protein 1 OS=Theobroma cacao OX=3641 GN=TCM_043081 PE=4 SV...	[more]
tr\|V7BFQ1\|V7BFQ1_PHAVU	2.1e-47	82.67	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G092000g PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02065-RA	Carg02065-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 136..170
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 37..208
None	No IPR available	PANTHER	PTHR31301:SF14	SUBFAMILY NOT NAMED	coord: 37..208
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 57..154 e-value: 3.8E-40 score: 136.3
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 56..157 score: 25.567

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02065	Cla020073	Watermelon (97103) v1	carwmB0844
Carg02065	Csa5G175870	Cucumber (Chinese Long) v2	carcuB0858
Carg02065	MELO3C011730	Melon (DHL92) v3.5.1	carmeB0832
Carg02065	ClCG02G013910	Watermelon (Charleston Gray)	carwcgB0812
Carg02065	CSPI05G08810	Wild cucumber (PI 183967)	carcpiB0878
Carg02065	Cucsa.166030	Cucumber (Gy14) v1	carcgyB0963
Carg02065	CmaCh04G002720	Cucurbita maxima (Rimu)	carcmaB1171
Carg02065	CmaCh04G012420	Cucurbita maxima (Rimu)	carcmaB1170
Carg02065	CmoCh04G002770	Cucurbita moschata (Rifu)	carcmoB1139
Carg02065	CmoCh04G013150	Cucurbita moschata (Rifu)	carcmoB1138
Carg02065	Lsi04G008120	Bottle gourd (USVL1VR-Ls)	carlsiB765
Carg02065	Cp4.1LG01g10320	Cucurbita pepo (Zucchini)	carcpeB1177
Carg02065	Cp4.1LG01g04270	Cucurbita pepo (Zucchini)	carcpeB1179
Carg02065	CsGy5G006200	Cucumber (Gy14) v2	carcgybB0832
Carg02065	MELO3C011730.2	Melon (DHL92) v3.6.1	carmedB0844
Carg02065	CsaV3_5G006250	Cucumber (Chinese Long) v3	carcucB0882
Carg02065	Cla97C02G039560	Watermelon (97103) v2	carwmbB0874
Carg02065	Bhi07G000881	Wax gourd	carwgoB0984

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02065	Carg25670	Silver-seed gourd	carcarB625

The following block(s) are covering this gene:

None