CmoCh04G002770 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G002770
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	LOB domain-containing protein 1
Location	Cmo_Chr04 : 1399587 .. 1400664 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTTTCTCTCTCTAGCAGAAAATTAAAAAAAAAACATAAACAAATGGCTTACGTGGCCAAATGTACGAGCTCTCCACCAACGCCGACCACTCTTCCTAACCCCCCCTTATCTTCCTCCGCCGCCGCCGCCACCACCAACTTCGTGTCGCCTCCCACTTCTCAACAGTCGTCGACGCCGGTCGCGGTGGTTCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGGCGCCGCTGCATCGAGAAGTGCGTTTTGGCTCCTTATTTTCCTCCGACGGAGCCCCTCAAATTCACCATTGCTCATAGAGTGTTTGGAGCTAGCAATATCATCAAGTTCTTGCAAGTACGCCCAGCCCACAAAATTTAATTCTTAAATTCATTCTCTCCCCCTCTTGCTCGAACCCATGCCCTTCACTTCAAACCACAATTAAATTTAGCTCATTCCATCGTGCCACAATGCCACATCCTTCATTACGTTGATACCAATTTGAGTCATTAAATTGTTAGATGAACACGAGAGAGCGCGTGCGACTTTTATCATCCAACAACAATTAGATATCAGAGTATTTTTTATTAACAAGTGGTATCAGAGCATTAAATTACGACTCATTTAAGGTTGTAAATTATGCAGGAGCTGCCGGAATGCCAAAGAACAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGGGTGCGAGATCCGGTGTACGGCAGCGCGGGCGCAATTTGCCAGCTGCAAACGCAAGTGAGCGAGTTGCAGGCACAGCTAGCCAAGGCCAGGGCAGAGGTAGCCAATATGCAGCAACAGCAAGCCAACTTATTAGCGTTGATTTGCATGGAAATGAAGCAATCAGCGGAGCCCCTTTGGGCATCGCACCTTGCGGATACCACTTGCTTCCTTGACGATGCTACTCTTAGCGCACCGTGGGAGCCGCTCTGGACATGACCGCAGCCGTTGCATTCATATATTTAATTTCATTGTAAACCACATATCCGATTATTAAAAATAATTTCAATGATTTAACTCTAAATGTGAAAGGGCTTCCACTTTTTGAATTCTATTTATTTTTTATTTTTTG

mRNA sequence

CCATTTTCTCTCTCTAGCAGAAAATTAAAAAAAAAACATAAACAAATGGCTTACGTGGCCAAATGTACGAGCTCTCCACCAACGCCGACCACTCTTCCTAACCCCCCCTTATCTTCCTCCGCCGCCGCCGCCACCACCAACTTCGTGTCGCCTCCCACTTCTCAACAGTCGTCGACGCCGGTCGCGGTGGTTCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGGCGCCGCTGCATCGAGAAGTGCGTTTTGGCTCCTTATTTTCCTCCGACGGAGCCCCTCAAATTCACCATTGCTCATAGAGTGTTTGGAGCTAGCAATATCATCAAGTTCTTGCAAGAGCTGCCGGAATGCCAAAGAACAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGGGTGCGAGATCCGGTGTACGGCAGCGCGGGCGCAATTTGCCAGCTGCAAACGCAAGTGAGCGAGTTGCAGGCACAGCTAGCCAAGGCCAGGGCAGAGGTAGCCAATATGCAGCAACAGCAAGCCAACTTATTAGCGTTGATTTGCATGGAAATGAAGCAATCAGCGGAGCCCCTTTGGGCATCGCACCTTGCGGATACCACTTGCTTCCTTGACGATGCTACTCTTAGCGCACCGTGGGAGCCGCTCTGGACATGACCGCAGCCGTTGCATTCATATATTTAATTTCATTGTAAACCACATATCCGATTATTAAAAATAATTTCAATGATTTAACTCTAAATGTGAAAGGGCTTCCACTTTTTGAATTCTATTTATTTTTTATTTTTTG

Coding sequence (CDS)

ATGGCTTACGTGGCCAAATGTACGAGCTCTCCACCAACGCCGACCACTCTTCCTAACCCCCCCTTATCTTCCTCCGCCGCCGCCGCCACCACCAACTTCGTGTCGCCTCCCACTTCTCAACAGTCGTCGACGCCGGTCGCGGTGGTTCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGGCGCCGCTGCATCGAGAAGTGCGTTTTGGCTCCTTATTTTCCTCCGACGGAGCCCCTCAAATTCACCATTGCTCATAGAGTGTTTGGAGCTAGCAATATCATCAAGTTCTTGCAAGAGCTGCCGGAATGCCAAAGAACAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGGGTGCGAGATCCGGTGTACGGCAGCGCGGGCGCAATTTGCCAGCTGCAAACGCAAGTGAGCGAGTTGCAGGCACAGCTAGCCAAGGCCAGGGCAGAGGTAGCCAATATGCAGCAACAGCAAGCCAACTTATTAGCGTTGATTTGCATGGAAATGAAGCAATCAGCGGAGCCCCTTTGGGCATCGCACCTTGCGGATACCACTTGCTTCCTTGACGATGCTACTCTTAGCGCACCGTGGGAGCCGCTCTGGACATGA

Homology

[Close]

BLAST of CmoCh04G002770 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.0e-53
Identity = 119/185 (64.32%), Postives = 138/185 (74.59%), Query Frame = 1


Query: 24  SSAAAATTNFVSPPTSQQSSTPVAVVLSPCAACKILRRRCIEKCVLAPYFPPTEPLKFTI 83
           S A+ ATT  +S  +S   S    VVLSPCAACKILRRRC E+CVLAPYFPPT+P KFTI
Sbjct: 5   SDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTI 64

Query: 84  AHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARVRDPVYGSAGAICQLQTQVSELQA 143
           AHRVFGASNIIKFLQELPE QRTDAV+SMVYEA AR+RDPVYG AGAI  LQ QVSELQA
Sbjct: 65  AHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQA 124

Query: 144 QLAKARAEVANMQQQQANLLALIC-MEMKQSAEPLWASHLADTTCFLDDATLSAP----W 203
           QLAKA+ E+ NMQ Q++NLL LI  M+ +Q  E    S  ++   FL+D + +      W
Sbjct: 125 QLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMSFESNDLGFLEDKSNTNSSMLWW 184

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BLAST of CmoCh04G002770 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 1.2e-47
Identity = 110/163 (67.48%), Postives = 124/163 (76.07%), Query Frame = 1


Query: 4   VAKCTSSPPTPTTLPNPPLSSSAAAATTNFVSPPTSQQSSTPVAVVLSPCAACKILRRRC 63
           VAK T +  TP   P+P         T++   PP+ QQ   P  VVLSPCAACKILRRRC
Sbjct: 18  VAKVTETT-TPVNSPSP---------TSSPPPPPSPQQPPQP-PVVLSPCAACKILRRRC 77

Query: 64  IEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARVRDP 123
            +KCVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYEA AR+RDP
Sbjct: 78  ADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDP 137

Query: 124 VYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALI 167
           VYG AGAI  LQ QVSELQAQLAK + E+  MQ Q+++LL LI
Sbjct: 138 VYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 169

[Close]

BLAST of CmoCh04G002770 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 7.0e-35
Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = 1


Query: 51  SPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 110
           SPCA+CK+LRRRC + C+ APYFPP +P KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 111 SMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQ 159
           S+V+EANARVRDPVYG  GAI  LQ QVS+LQ QLA A+AE+  +Q Q
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of CmoCh04G002770 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-34
Identity = 75/110 (68.18%), Postives = 86/110 (78.18%), Query Frame = 1


Query: 51  SPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 110
           SPCAACK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 111 SMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQA 161
           SMVYEANARVRDPVYG  GAI  LQ Q+  LQAQLA A+AEV +++ +Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of CmoCh04G002770 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-31
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1


Query: 50  LSPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAV 109
           ++PCAACK+LRRRC ++C  +PYF P EP KF   H+VFGASN+ K L E+PE QR DA 
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query: 110 SSMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQA 161
           +S+VYEAN R+RDPVYG  GAI  LQ QV  LQA+L   R+E+   +Q++A
Sbjct: 103 NSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA 153

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BLAST of CmoCh04G002770 vs. TrEMBL
Match: A0A0A0KNK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175870 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 8.5e-80
Identity = 154/170 (90.59%), Postives = 160/170 (94.12%), Query Frame = 1


Query: 35  SPPTSQQSSTPV-AVVLSPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNI 94
           SPPTSQ SS P  AVVLSPCAACKILRRRC+EKCVLAPYFPPT+PLKFTIAHRVFGASNI
Sbjct: 4   SPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNI 63

Query: 95  IKFLQELPECQRTDAVSSMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVA 154
           IKFLQELPECQRTDAVSSMVYEANAR+RDPVYGSAGAICQLQ QVSELQAQLAKARAEVA
Sbjct: 64  IKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA 123

Query: 155 NMQQQQANLLALICMEMKQSAEPLWASHLADTTCFLDDATLSAPWEPLWT 204
           NMQQQQANLLALICMEM+QS EP+W   L DTTCFLDDATLS+PWEPLWT
Sbjct: 124 NMQQQQANLLALICMEMRQSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 173

[Close]

BLAST of CmoCh04G002770 vs. TrEMBL
Match: W9RZL7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014124 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.4e-66
Identity = 147/214 (68.69%), Postives = 161/214 (75.23%), Query Frame = 1


Query: 5   AKCTSSPPTPTTLPNPPLSSSAAAATTNFVSPPTSQQSS-----TPVA---------VVL 64
           A  +SS   P++    P SS  ++ TT F SPP S QSS     TPV          VVL
Sbjct: 17  APFSSSHSPPSSSSPTPNSSQLSSPTTTFPSPPNSYQSSPTSAVTPVPLPPPPPPPPVVL 76

Query: 65  SPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 124
           SPCAACKILRRRC++KCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQE+PE QR DAVS
Sbjct: 77  SPCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQEIPESQRADAVS 136

Query: 125 SMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALICMEM 184
           SMVYEANAR+RDPVYG AGAICQLQ QVSELQAQLAKA+AE+ NMQ QQANL+ALICM+M
Sbjct: 137 SMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLIALICMDM 196

Query: 185 KQSAEP-LWASHLADTTCFLDDATLSAPWEPLWT 204
            Q  EP        DT+CFLDD TL   WEPLWT
Sbjct: 197 TQLQEPNSQQQPYGDTSCFLDDNTLGTTWEPLWT 230

[Close]

BLAST of CmoCh04G002770 vs. TrEMBL
Match: A0A061FNS0_THECC (LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_043081 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.5e-65
Identity = 140/204 (68.63%), Postives = 156/204 (76.47%), Query Frame = 1


Query: 2   AYVAKCTSSPPTPTTLPNPPLSSSAAAATTNFVSPPTSQQSSTPVAVVLSPCAACKILRR 61
           +Y    +SSPPTP   P  P  +S + +  N   PP    S  PV  VLSPCAACKILRR
Sbjct: 19  SYSPSSSSSPPTPHYSPGFPSPNSQSNSPKNSHQPPPPPASPPPV--VLSPCAACKILRR 78

Query: 62  RCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARVR 121
           RC+EKCVLAPYFPPTEP KFTIAHRVFGASNIIK LQELPE QR DAVSSMVYEA+AR+R
Sbjct: 79  RCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKSLQELPESQRADAVSSMVYEASARIR 138

Query: 122 DPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALICMEMKQSAEPL--WA 181
           DPVYG AGAICQLQ QVS+LQAQLAK +AE+  MQ QQANLLALICMEM QS EP     
Sbjct: 139 DPVYGCAGAICQLQKQVSDLQAQLAKTQAELVTMQCQQANLLALICMEMTQSKEPTSQQQ 198

Query: 182 SHLADTTCFLDDATLSAPWEPLWT 204
            +  DT+CFLDD+ L++ WEPLWT
Sbjct: 199 PYSIDTSCFLDDSNLASAWEPLWT 220

[Close]

BLAST of CmoCh04G002770 vs. TrEMBL
Match: A0A151U637_CAJCA (LOB domain-containing protein 1 OS=Cajanus cajan GN=KK1_007445 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.0e-64
Identity = 142/213 (66.67%), Postives = 159/213 (74.65%), Query Frame = 1


Query: 4   VAKCTSSPP----TPTTLPNPPLSSSAAAATTNFVSPPTSQQSSTPVA-------VVLSP 63
           V   T+SPP     PT L N P SSS++  + +    P+  Q S P A       VV+SP
Sbjct: 5   VKTTTTSPPIPIHVPTMLSNSPPSSSSSPPSQSHTPFPSPSQGSPPAAPPSPPPPVVVSP 64

Query: 64  CAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM 123
           CAACKILRRRC+EKCVLAPYFPPT+P+KFTIAHRVFGASNIIKFLQELPE QR DAVSSM
Sbjct: 65  CAACKILRRRCVEKCVLAPYFPPTDPIKFTIAHRVFGASNIIKFLQELPESQRADAVSSM 124

Query: 124 VYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALICMEMKQ 183
           VYEANAR+RDPVYG AGAICQLQ QVSELQAQLAKA+AEV NMQ QQANL+ALICMEM Q
Sbjct: 125 VYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALICMEMSQ 184

Query: 184 SAEP--LWASHLADTTCFLDDATLSAPWEPLWT 204
           S +   L      D +CF++D T    WEPLWT
Sbjct: 185 SQDQNMLQPQPHVDMSCFIEDNTFGTAWEPLWT 217

[Close]

BLAST of CmoCh04G002770 vs. TrEMBL
Match: V7BFQ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G092000g PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.7e-64
Identity = 143/210 (68.10%), Postives = 160/210 (76.19%), Query Frame = 1


Query: 8   TSSPP------TPTTLPNPPLSSSAAAAT---TNFVSP---PTSQQSSTPVAVVLSPCAA 67
           T SPP       P+ L N P SSS++  +   T F SP   P++   S P  VV+SPCAA
Sbjct: 9   TPSPPIPIPIHVPSMLSNSPPSSSSSPPSHSPTPFPSPSPSPSAAPPSPPPPVVVSPCAA 68

Query: 68  CKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 127
           CKILRRRC+EKCVLAPYFPPT+PLKFTIAHRVFGASNIIKFLQELPE QR DAVSSMVYE
Sbjct: 69  CKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYE 128

Query: 128 ANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALICMEMKQSAE 187
           ANAR+RDPVYG AGAICQLQ QVSELQAQLAKA+AE+ NMQ QQANL+ALICMEM QS E
Sbjct: 129 ANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLVALICMEMSQSQE 188

Query: 188 P--LWASHLADTTCFLDDATLSAPWEPLWT 204
              +    L D +CF++D T    WEPLWT
Sbjct: 189 QHVVQPQPLVDMSCFIEDNTFGTAWEPLWT 218

[Close]

BLAST of CmoCh04G002770 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-54
Identity = 119/185 (64.32%), Postives = 138/185 (74.59%), Query Frame = 1


Query: 24  SSAAAATTNFVSPPTSQQSSTPVAVVLSPCAACKILRRRCIEKCVLAPYFPPTEPLKFTI 83
           S A+ ATT  +S  +S   S    VVLSPCAACKILRRRC E+CVLAPYFPPT+P KFTI
Sbjct: 5   SDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTI 64

Query: 84  AHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARVRDPVYGSAGAICQLQTQVSELQA 143
           AHRVFGASNIIKFLQELPE QRTDAV+SMVYEA AR+RDPVYG AGAI  LQ QVSELQA
Sbjct: 65  AHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQA 124

Query: 144 QLAKARAEVANMQQQQANLLALIC-MEMKQSAEPLWASHLADTTCFLDDATLSAP----W 203
           QLAKA+ E+ NMQ Q++NLL LI  M+ +Q  E    S  ++   FL+D + +      W
Sbjct: 125 QLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMSFESNDLGFLEDKSNTNSSMLWW 184

[Close]

BLAST of CmoCh04G002770 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 191.0 bits (484), Expect = 7.0e-49
Identity = 110/163 (67.48%), Postives = 124/163 (76.07%), Query Frame = 1


Query: 4   VAKCTSSPPTPTTLPNPPLSSSAAAATTNFVSPPTSQQSSTPVAVVLSPCAACKILRRRC 63
           VAK T +  TP   P+P         T++   PP+ QQ   P  VVLSPCAACKILRRRC
Sbjct: 18  VAKVTETT-TPVNSPSP---------TSSPPPPPSPQQPPQP-PVVLSPCAACKILRRRC 77

Query: 64  IEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARVRDP 123
            +KCVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYEA AR+RDP
Sbjct: 78  ADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDP 137

Query: 124 VYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALI 167
           VYG AGAI  LQ QVSELQAQLAK + E+  MQ Q+++LL LI
Sbjct: 138 VYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 169

[Close]

BLAST of CmoCh04G002770 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 148.7 bits (374), Expect = 4.0e-36
Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = 1


Query: 51  SPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 110
           SPCA+CK+LRRRC + C+ APYFPP +P KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 111 SMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQ 159
           S+V+EANARVRDPVYG  GAI  LQ QVS+LQ QLA A+AE+  +Q Q
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of CmoCh04G002770 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 147.9 bits (372), Expect = 6.8e-36
Identity = 75/110 (68.18%), Postives = 86/110 (78.18%), Query Frame = 1


Query: 51  SPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 110
           SPCAACK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 111 SMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQA 161
           SMVYEANARVRDPVYG  GAI  LQ Q+  LQAQLA A+AEV +++ +Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of CmoCh04G002770 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-32
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1


Query: 50  LSPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAV 109
           ++PCAACK+LRRRC ++C  +PYF P EP KF   H+VFGASN+ K L E+PE QR DA 
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query: 110 SSMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQA 161
           +S+VYEAN R+RDPVYG  GAI  LQ QV  LQA+L   R+E+   +Q++A
Sbjct: 103 NSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA 153

[Close]

BLAST of CmoCh04G002770 vs. NCBI nr
Match: gi|449451890|ref|XP_004143693.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 7.4e-85
Identity = 173/208 (83.17%), Postives = 184/208 (88.46%), Query Frame = 1


Query: 1   MAYVAKCTS-SPPTPTTL---PNPPLSSSAAAATTNFVSPPTSQQSSTPV-AVVLSPCAA 60
           MAYVAKCT+ SPPTP ++   PN PLS S  ++     SPPTSQ SS P  AVVLSPCAA
Sbjct: 1   MAYVAKCTNNSPPTPISVNNNPNNPLSFSPMSS-----SPPTSQPSSPPPPAVVLSPCAA 60

Query: 61  CKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRC+EKCVLAPYFPPT+PLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE
Sbjct: 61  CKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120

Query: 121 ANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALICMEMKQSAE 180
           ANAR+RDPVYGSAGAICQLQ QVSELQAQLAKARAEVANMQQQQANLLALICMEM+QS E
Sbjct: 121 ANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPE 180

Query: 181 PLWASHLADTTCFLDDATLSAPWEPLWT 204
           P+W   L DTTCFLDDATLS+PWEPLWT
Sbjct: 181 PVWQPQLVDTTCFLDDATLSSPWEPLWT 203

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BLAST of CmoCh04G002770 vs. NCBI nr
Match: gi|659090144|ref|XP_008445860.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 319.7 bits (818), Expect = 3.7e-84
Identity = 172/208 (82.69%), Postives = 182/208 (87.50%), Query Frame = 1


Query: 1   MAYVAKCTS-SPPTPTTL---PNPPLSSSAAAATTNFVSPPTSQQSSTPVA-VVLSPCAA 60
           MAYVAKCT+ SPPTP +    PN PLS S  ++     SPPTSQ SS P   VVLSPCAA
Sbjct: 1   MAYVAKCTNNSPPTPISFNNNPNNPLSFSPMSS-----SPPTSQPSSPPPPPVVLSPCAA 60

Query: 61  CKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120
           CKILRRRC+EKCVLAPYFPPT+PLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE
Sbjct: 61  CKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYE 120

Query: 121 ANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALICMEMKQSAE 180
           ANAR+RDPVYGSAGAICQLQ QVSELQAQLAKARAEVANMQQQQANLLALICMEM+QS E
Sbjct: 121 ANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPE 180

Query: 181 PLWASHLADTTCFLDDATLSAPWEPLWT 204
           P+W   L DTTCFLDDATLS+PWEPLWT
Sbjct: 181 PVWQPQLVDTTCFLDDATLSSPWEPLWT 203

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BLAST of CmoCh04G002770 vs. NCBI nr
Match: gi|700195287|gb|KGN50464.1| (hypothetical protein Csa_5G175870 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.2e-79
Identity = 154/170 (90.59%), Postives = 160/170 (94.12%), Query Frame = 1


Query: 35  SPPTSQQSSTPV-AVVLSPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNI 94
           SPPTSQ SS P  AVVLSPCAACKILRRRC+EKCVLAPYFPPT+PLKFTIAHRVFGASNI
Sbjct: 4   SPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNI 63

Query: 95  IKFLQELPECQRTDAVSSMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVA 154
           IKFLQELPECQRTDAVSSMVYEANAR+RDPVYGSAGAICQLQ QVSELQAQLAKARAEVA
Sbjct: 64  IKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA 123

Query: 155 NMQQQQANLLALICMEMKQSAEPLWASHLADTTCFLDDATLSAPWEPLWT 204
           NMQQQQANLLALICMEM+QS EP+W   L DTTCFLDDATLS+PWEPLWT
Sbjct: 124 NMQQQQANLLALICMEMRQSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 173

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BLAST of CmoCh04G002770 vs. NCBI nr
Match: gi|703145126|ref|XP_010108453.1| (hypothetical protein L484_014124 [Morus notabilis])

HSP 1 Score: 260.0 bits (663), Expect = 3.5e-66
Identity = 147/214 (68.69%), Postives = 161/214 (75.23%), Query Frame = 1


Query: 5   AKCTSSPPTPTTLPNPPLSSSAAAATTNFVSPPTSQQSS-----TPVA---------VVL 64
           A  +SS   P++    P SS  ++ TT F SPP S QSS     TPV          VVL
Sbjct: 17  APFSSSHSPPSSSSPTPNSSQLSSPTTTFPSPPNSYQSSPTSAVTPVPLPPPPPPPPVVL 76

Query: 65  SPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 124
           SPCAACKILRRRC++KCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQE+PE QR DAVS
Sbjct: 77  SPCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQEIPESQRADAVS 136

Query: 125 SMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALICMEM 184
           SMVYEANAR+RDPVYG AGAICQLQ QVSELQAQLAKA+AE+ NMQ QQANL+ALICM+M
Sbjct: 137 SMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLIALICMDM 196

Query: 185 KQSAEP-LWASHLADTTCFLDDATLSAPWEPLWT 204
            Q  EP        DT+CFLDD TL   WEPLWT
Sbjct: 197 TQLQEPNSQQQPYGDTSCFLDDNTLGTTWEPLWT 230

[Close]

BLAST of CmoCh04G002770 vs. NCBI nr
Match: gi|590564701|ref|XP_007009738.1| (LOB domain-containing protein 1 [Theobroma cacao])

HSP 1 Score: 255.8 bits (652), Expect = 6.5e-65
Identity = 140/204 (68.63%), Postives = 156/204 (76.47%), Query Frame = 1


Query: 2   AYVAKCTSSPPTPTTLPNPPLSSSAAAATTNFVSPPTSQQSSTPVAVVLSPCAACKILRR 61
           +Y    +SSPPTP   P  P  +S + +  N   PP    S  PV  VLSPCAACKILRR
Sbjct: 19  SYSPSSSSSPPTPHYSPGFPSPNSQSNSPKNSHQPPPPPASPPPV--VLSPCAACKILRR 78

Query: 62  RCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARVR 121
           RC+EKCVLAPYFPPTEP KFTIAHRVFGASNIIK LQELPE QR DAVSSMVYEA+AR+R
Sbjct: 79  RCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKSLQELPESQRADAVSSMVYEASARIR 138

Query: 122 DPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALICMEMKQSAEPL--WA 181
           DPVYG AGAICQLQ QVS+LQAQLAK +AE+  MQ QQANLLALICMEM QS EP     
Sbjct: 139 DPVYGCAGAICQLQKQVSDLQAQLAKTQAELVTMQCQQANLLALICMEMTQSKEPTSQQQ 198

Query: 182 SHLADTTCFLDDATLSAPWEPLWT 204
            +  DT+CFLDD+ L++ WEPLWT
Sbjct: 199 PYSIDTSCFLDDSNLASAWEPLWT 220

The following BLAST results are available for this feature:

BLAST of CmoCh04G002770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD1_ARATH	2.0e-53	64.32	LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1	[more]
LBD11_ARATH	1.2e-47	67.48	LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2	[more]
LBD12_ARATH	7.0e-35	66.67	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD4_ARATH	1.2e-34	68.18	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD15_ARATH	2.8e-31	57.66	LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2	[more]

BLAST of CmoCh04G002770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNK9_CUCSA	8.5e-80	90.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175870 PE=4 SV=1	[more]
W9RZL7_9ROSA	2.4e-66	68.69	Uncharacterized protein OS=Morus notabilis GN=L484_014124 PE=4 SV=1	[more]
A0A061FNS0_THECC	4.5e-65	68.63	LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_043081 PE=4 SV=1	[more]
A0A151U637_CAJCA	1.0e-64	66.67	LOB domain-containing protein 1 OS=Cajanus cajan GN=KK1_007445 PE=4 SV=1	[more]
V7BFQ1_PHAVU	1.7e-64	68.10	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G092000g PE=4 SV=1	[more]

BLAST of CmoCh04G002770 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07900.1	1.1e-54	64.32	LOB domain-containing protein 1	[more]
AT2G28500.1	7.0e-49	67.48	LOB domain-containing protein 11	[more]
AT2G30130.1	4.0e-36	66.67	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	6.8e-36	68.18	LOB domain-containing protein 4	[more]
AT2G40470.1	1.6e-32	57.66	LOB domain-containing protein 15	[more]

BLAST of CmoCh04G002770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451890\|ref\|XP_004143693.1\|	7.4e-85	83.17	PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]	[more]
gi\|659090144\|ref\|XP_008445860.1\|	3.7e-84	82.69	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]
gi\|700195287\|gb\|KGN50464.1\|	1.2e-79	90.59	hypothetical protein Csa_5G175870 [Cucumis sativus]	[more]
gi\|703145126\|ref\|XP_010108453.1\|	3.5e-66	68.69	hypothetical protein L484_014124 [Morus notabilis]	[more]
gi\|590564701\|ref\|XP_007009738.1\|	6.5e-65	68.63	LOB domain-containing protein 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005951	carbamoyl-phosphate synthase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G002770.1	CmoCh04G002770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 52..149 score: 1.0
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 51..152 score: 25
None	No IPR available	unknown	Coil	Coil	coord: 131..165 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 26..202 score: 1.1E
None	No IPR available	PANTHER	PTHR31301:SF14	LOB DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 26..202 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G002770	Cucsa.166030	Cucumber (Gy14) v1	cgycmoB0474
CmoCh04G002770	CmaCh04G002720	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G002770	CmaCh04G012420	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G002770	CmaCh15G004330	Cucurbita maxima (Rimu)	cmacmoB307
CmoCh04G002770	Cla004725	Watermelon (97103) v1	cmowmB644
CmoCh04G002770	Cla020073	Watermelon (97103) v1	cmowmB720
CmoCh04G002770	Csa5G175870	Cucumber (Chinese Long) v2	cmocuB737
CmoCh04G002770	Csa5G496470	Cucumber (Chinese Long) v2	cmocuB746
CmoCh04G002770	MELO3C025504	Melon (DHL92) v3.5.1	cmomeB619
CmoCh04G002770	MELO3C011730	Melon (DHL92) v3.5.1	cmomeB646
CmoCh04G002770	ClCG02G013910	Watermelon (Charleston Gray)	cmowcgB644
CmoCh04G002770	CSPI05G08810	Wild cucumber (PI 183967)	cmocpiB747
CmoCh04G002770	CSPI05G16950	Wild cucumber (PI 183967)	cmocpiB755
CmoCh04G002770	Lsi04G008120	Bottle gourd (USVL1VR-Ls)	cmolsiB670
CmoCh04G002770	Lsi02G016970	Bottle gourd (USVL1VR-Ls)	cmolsiB634
CmoCh04G002770	Lsi10G012950	Bottle gourd (USVL1VR-Ls)	cmolsiB619
CmoCh04G002770	Cp4.1LG01g10320	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G002770	Cp4.1LG01g04270	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G002770	Cp4.1LG05g08710	Cucurbita pepo (Zucchini)	cmocpeB705
CmoCh04G002770	MELO3C011730.2	Melon (DHL92) v3.6.1	cmomedB733
CmoCh04G002770	CsaV3_5G025960	Cucumber (Chinese Long) v3	cmocucB0882
CmoCh04G002770	CsaV3_6G021580	Cucumber (Chinese Long) v3	cmocucB0908
CmoCh04G002770	CsaV3_5G006250	Cucumber (Chinese Long) v3	cmocucB0873
CmoCh04G002770	Cla97C02G046930	Watermelon (97103) v2	cmowmbB716
CmoCh04G002770	Cla97C02G039560	Watermelon (97103) v2	cmowmbB714
CmoCh04G002770	Bhi07G000881	Wax gourd	cmowgoB0893
CmoCh04G002770	CsGy5G006200	Cucumber (Gy14) v2	cgybcmoB652
CmoCh04G002770	Carg25670	Silver-seed gourd	carcmoB1148
CmoCh04G002770	Carg02065	Silver-seed gourd	carcmoB1139
CmoCh04G002770	Carg20239	Silver-seed gourd	carcmoB0422

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G002770	CmoCh15G004440	Cucurbita moschata (Rifu)	cmocmoB259
CmoCh04G002770	CmoCh20G005020	Cucurbita moschata (Rifu)	cmocmoB421
CmoCh04G002770	CmoCh02G008700	Cucurbita moschata (Rifu)	cmocmoB433
CmoCh04G002770	CmoCh04G013150	Cucurbita moschata (Rifu)	cmocmoB464

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G002770	Cucumber (Chinese Long) v3	cmocucB0837