CmaCh04G012420 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G012420
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLOB domain-containing protein 1
LocationCma_Chr04 : 6371441 .. 6372522 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAATCACAAAGCAAAAGAAAAGAAAAAAAAAAAAAATGGCTTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTTCAAACCACCCCTTATCTTACTCCCCTATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACATCTCAGCCGTCGTCTCCACCGCCGCCTGCGGTGATCCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCCTATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGTATGCCCAAAAATTTATTTTTTTTATTAAATTAATTCACACCCACATTTTGAAATTCCCCAATTTGTCCTTCCAATCTATTTTTGTTTAGAGTTTAAGGTTAGGAAATTATTATTAGTAATTCCATGTATTGTAGGAAAAAAAAACATTAATTAATTAACTTTTTTTGGTATTTTTAAAATAAACAAAAGGGTATAGTCGGATTTAACTAAAAAAAGAAATGAGTTGATTTGACTTAACTGGGTTTGACTTTTGATGGGACTTAATCCCGTAATCAATGCAACTTTGGTCTCTCTAATTTTCCTCTAAACCTTATTATTAAACAACTAATTAAAGAATTAACTTTTTCTTAATATTTGCAGGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCACATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGCCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAGGTGGCTAATATGCAGCACCAACAAGCCAACTTACTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCCCCGACACTACCTGCTTCCTCGACGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGATTTCAAAGTTAATTGTTTTGGAATGATATTTAATTTGGGTTAGAGAAGG

mRNA sequence

AAAAAAAAAAAATCACAAAGCAAAAGAAAAGAAAAAAAAAAAAAATGGCTTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTTCAAACCACCCCTTATCTTACTCCCCTATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACATCTCAGCCGTCGTCTCCACCGCCGCCTGCGGTGATCCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCCTATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCACATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGCCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAGGTGGCTAATATGCAGCACCAACAAGCCAACTTACTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCCCCGACACTACCTGCTTCCTCGACGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGATTTCAAAGTTAATTGTTTTGGAATGATATTTAATTTGGGTTAGAGAAGG

Coding sequence (CDS)

ATGGCTTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTTCAAACCACCCCTTATCTTACTCCCCTATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACATCTCAGCCGTCGTCTCCACCGCCGCCTGCGGTGATCCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCCTATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCACATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGCCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAGGTGGCTAATATGCAGCACCAACAAGCCAACTTACTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCCCCGACACTACCTGCTTCCTCGACGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGA

Protein sequence

MAYLAKCTNAPSTPITVSNHPLSYSPISSSSAATTNFGSPPTSQPSSPPPPAVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMRQSPDPVWPPQLPDTTCFLDDAALSSPWEPLWT
Homology
[Close]
BLAST of CmaCh04G012420 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.6e-53
Identity = 120/189 (63.49%), Postives = 141/189 (74.60%), Query Frame = 1 

Query: 28  SSSSAATTNFGSPPTSQPSSPPP---PAVILSPCAACKILRRRCVEKCVLAPYFPPSEPL 87
           S +S ATT    P  S  SSPPP   P V+LSPCAACKILRRRC E+CVLAPYFPP++P 
Sbjct: 5   SDASVATT----PIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPA 64

Query: 88  KFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEAHARLRDPVYGSAGAICQLQKQVS 147
           KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYEA AR+RDPVYG AGAI  LQ+QVS
Sbjct: 65  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVS 124

Query: 148 ELQAQLAKARAEVANMQHQQANLLALIC-MEMRQSPDPVWPPQLPDTTCFLDDAALSSP- 207
           ELQAQLAKA+ E+ NMQ Q++NLL LI  M+ +Q  +        +   FL+D + ++  
Sbjct: 125 ELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMSFESNDLGFLEDKSNTNSS 184

Query: 208 ---WEPLWT 209
              W+PLWT
Sbjct: 185 MLWWDPLWT 189

[Close]
BLAST of CmaCh04G012420 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-49
Identity = 106/162 (65.43%), Postives = 125/162 (77.16%), Query Frame = 1 

Query: 10  APSTPITVSNHPLSYSPISSSSAATTNFGSPPTSQPSSPPPPAVILSPCAACKILRRRCV 69
           A  T   V+    + +P++S S  ++    PP   P  PP P V+LSPCAACKILRRRC 
Sbjct: 11  ATPTASAVAKVTETTTPVNSPSPTSS---PPPPPSPQQPPQPPVVLSPCAACKILRRRCA 70

Query: 70  EKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEAHARLRDPV 129
           +KCVLAPYFPP++P KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYEA AR+RDPV
Sbjct: 71  DKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPV 130

Query: 130 YGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALI 172
           YG AGAI  LQ+QVSELQAQLAK + E+  MQ Q+++LL LI
Sbjct: 131 YGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 169

[Close]
BLAST of CmaCh04G012420 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 1 

Query: 56  SPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 115
           SPCAACK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 116 SMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQA 166
           SMVYEA+AR+RDPVYG  GAI  LQ+Q+  LQAQLA A+AEV +++ +Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]
BLAST of CmaCh04G012420 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-34
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 56  SPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 115
           SPCA+CK+LRRRC + C+ APYFPP +P KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 116 SMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQ 164
           S+V+EA+AR+RDPVYG  GAI  LQ QVS+LQ QLA A+AE+  +Q Q
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]
BLAST of CmaCh04G012420 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 7.5e-32
Identity = 66/120 (55.00%), Postives = 85/120 (70.83%), Query Frame = 1 

Query: 46  SSPPPPAVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQEL 105
           S PP     ++PCAACK+LRRRC ++C  +PYF P EP KF   H+VFGASN+ K L E+
Sbjct: 34  SGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEV 93

Query: 106 PECQRTDAVSSMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQA 165
           PE QR DA +S+VYEA+ RLRDPVYG  GAI  LQ+QV  LQA+L   R+E+   + ++A
Sbjct: 94  PESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA 153

[Close]
BLAST of CmaCh04G012420 vs. TrEMBL
Match: A0A0A0KNK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175870 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 9.7e-87
Identity = 161/170 (94.71%), Postives = 166/170 (97.65%), Query Frame = 1 

Query: 39  SPPTSQPSSPPPPAVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNI 98
           SPPTSQPSSPPPPAV+LSPCAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNI
Sbjct: 4   SPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNI 63

Query: 99  IKFLQELPECQRTDAVSSMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA 158
           IKFLQELPECQRTDAVSSMVYEA+ARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA
Sbjct: 64  IKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA 123

Query: 159 NMQHQQANLLALICMEMRQSPDPVWPPQLPDTTCFLDDAALSSPWEPLWT 209
           NMQ QQANLLALICMEMRQSP+PVW PQL DTTCFLDDA LSSPWEPLWT
Sbjct: 124 NMQQQQANLLALICMEMRQSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 173

[Close]
BLAST of CmaCh04G012420 vs. TrEMBL
Match: V7BFQ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G092000g PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.6e-68
Identity = 149/213 (69.95%), Postives = 168/213 (78.87%), Query Frame = 1 

Query: 8   TNAPSTPITVSNHP---LSYSPISSSSA----ATTNFGSP---PTSQPSSPPPPAVILSP 67
           T  PS PI +  H    LS SP SSSS+    + T F SP   P++ P SPPPP V++SP
Sbjct: 7   TTTPSPPIPIPIHVPSMLSNSPPSSSSSPPSHSPTPFPSPSPSPSAAPPSPPPP-VVVSP 66

Query: 68  CAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM 127
           CAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPE QR DAVSSM
Sbjct: 67  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSM 126

Query: 128 VYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMRQ 187
           VYEA+AR+RDPVYG AGAICQLQKQVSELQAQLAKA+AE+ NMQ QQANL+ALICMEM Q
Sbjct: 127 VYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLVALICMEMSQ 186

Query: 188 SPDP--VWPPQLPDTTCFLDDAALSSPWEPLWT 209
           S +   V P  L D +CF++D    + WEPLWT
Sbjct: 187 SQEQHVVQPQPLVDMSCFIEDNTFGTAWEPLWT 218

[Close]
BLAST of CmaCh04G012420 vs. TrEMBL
Match: A0A061FNS0_THECC (LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_043081 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.7e-67
Identity = 152/215 (70.70%), Postives = 167/215 (77.67%), Query Frame = 1 

Query: 10  APSTPITVSNHPLSYSPISSSSAATTNF--GSP-PTSQPSSP-------PPPA----VIL 69
           A  +PI+VS  P SYSP SSSS  T ++  G P P SQ +SP       PPPA    V+L
Sbjct: 7   AAISPISVST-PFSYSPSSSSSPPTPHYSPGFPSPNSQSNSPKNSHQPPPPPASPPPVVL 66

Query: 70  SPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 129
           SPCAACKILRRRCVEKCVLAPYFPP+EP KFTIAHRVFGASNIIK LQELPE QR DAVS
Sbjct: 67  SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKSLQELPESQRADAVS 126

Query: 130 SMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEM 189
           SMVYEA AR+RDPVYG AGAICQLQKQVS+LQAQLAK +AE+  MQ QQANLLALICMEM
Sbjct: 127 SMVYEASARIRDPVYGCAGAICQLQKQVSDLQAQLAKTQAELVTMQCQQANLLALICMEM 186

Query: 190 RQSPDPV--WPPQLPDTTCFLDDAALSSPWEPLWT 209
            QS +P     P   DT+CFLDD+ L+S WEPLWT
Sbjct: 187 TQSKEPTSQQQPYSIDTSCFLDDSNLASAWEPLWT 220

[Close]
BLAST of CmaCh04G012420 vs. TrEMBL
Match: W9RZL7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014124 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.2e-67
Identity = 152/224 (67.86%), Postives = 169/224 (75.45%), Query Frame = 1 

Query: 10  APSTP-ITV-----SNH--PLSYSPISSSS---AATTNFGSPPTSQPSSP---------- 69
           AP+ P ITV     S+H  P S SP  +SS   + TT F SPP S  SSP          
Sbjct: 7   APTLPRITVPAPFSSSHSPPSSSSPTPNSSQLSSPTTTFPSPPNSYQSSPTSAVTPVPLP 66

Query: 70  ---PPPAVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQEL 129
              PPP V+LSPCAACKILRRRCV+KCVLAPYFPP+EPLKFTIAHRVFGASNIIKFLQE+
Sbjct: 67  PPPPPPPVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQEI 126

Query: 130 PECQRTDAVSSMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQA 189
           PE QR DAVSSMVYEA+AR+RDPVYG AGAICQLQKQVSELQAQLAKA+AE+ NMQ QQA
Sbjct: 127 PESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQA 186

Query: 190 NLLALICMEMRQSPDPVWPPQ-LPDTTCFLDDAALSSPWEPLWT 209
           NL+ALICM+M Q  +P    Q   DT+CFLDD  L + WEPLWT
Sbjct: 187 NLIALICMDMTQLQEPNSQQQPYGDTSCFLDDNTLGTTWEPLWT 230

[Close]
BLAST of CmaCh04G012420 vs. TrEMBL
Match: I1NHD1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G177600 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.8e-67
Identity = 149/222 (67.12%), Postives = 169/222 (76.13%), Query Frame = 1 

Query: 1   MAYLAKCTNA-PSTPITVSNHP-LSYSPISSSSA----ATTNFGSPPTSQPSS------P 60
           M Y  K T + PS PI +     LS SP SSSS+    + T F SP    PS+      P
Sbjct: 1   MEYKVKTTTSTPSPPIPIHLPTMLSNSPPSSSSSPPSQSPTPFPSPSQGSPSAAPPSPPP 60

Query: 61  PPPAVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPEC 120
           PPP V++SPCAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPE 
Sbjct: 61  PPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPES 120

Query: 121 QRTDAVSSMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLL 180
           QR DAVSSMVYEA+AR+RDPVYG AGAICQLQKQVSELQAQLAKA+AEV NMQ QQANL+
Sbjct: 121 QRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLV 180

Query: 181 ALICMEMRQSPDP--VWPPQLPDTTCFLDDAALSSPWEPLWT 209
           ALICMEM QS +   + P    D +CF++D +  + WEPLWT
Sbjct: 181 ALICMEMSQSQEQHVLQPQPHVDMSCFIEDNSFGTAWEPLWT 222

[Close]
BLAST of CmaCh04G012420 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-54
Identity = 120/189 (63.49%), Postives = 141/189 (74.60%), Query Frame = 1 

Query: 28  SSSSAATTNFGSPPTSQPSSPPP---PAVILSPCAACKILRRRCVEKCVLAPYFPPSEPL 87
           S +S ATT    P  S  SSPPP   P V+LSPCAACKILRRRC E+CVLAPYFPP++P 
Sbjct: 5   SDASVATT----PIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPA 64

Query: 88  KFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEAHARLRDPVYGSAGAICQLQKQVS 147
           KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYEA AR+RDPVYG AGAI  LQ+QVS
Sbjct: 65  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVS 124

Query: 148 ELQAQLAKARAEVANMQHQQANLLALIC-MEMRQSPDPVWPPQLPDTTCFLDDAALSSP- 207
           ELQAQLAKA+ E+ NMQ Q++NLL LI  M+ +Q  +        +   FL+D + ++  
Sbjct: 125 ELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMSFESNDLGFLEDKSNTNSS 184

Query: 208 ---WEPLWT 209
              W+PLWT
Sbjct: 185 MLWWDPLWT 189

[Close]
BLAST of CmaCh04G012420 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 196.4 bits (498), Expect = 1.7e-50
Identity = 106/162 (65.43%), Postives = 125/162 (77.16%), Query Frame = 1 

Query: 10  APSTPITVSNHPLSYSPISSSSAATTNFGSPPTSQPSSPPPPAVILSPCAACKILRRRCV 69
           A  T   V+    + +P++S S  ++    PP   P  PP P V+LSPCAACKILRRRC 
Sbjct: 11  ATPTASAVAKVTETTTPVNSPSPTSS---PPPPPSPQQPPQPPVVLSPCAACKILRRRCA 70

Query: 70  EKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEAHARLRDPV 129
           +KCVLAPYFPP++P KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYEA AR+RDPV
Sbjct: 71  DKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPV 130

Query: 130 YGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALI 172
           YG AGAI  LQ+QVSELQAQLAK + E+  MQ Q+++LL LI
Sbjct: 131 YGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 169

[Close]
BLAST of CmaCh04G012420 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 147.5 bits (371), Expect = 9.0e-36
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 1 

Query: 56  SPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 115
           SPCAACK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 116 SMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQA 166
           SMVYEA+AR+RDPVYG  GAI  LQ+Q+  LQAQLA A+AEV +++ +Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]
BLAST of CmaCh04G012420 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-35
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 56  SPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 115
           SPCA+CK+LRRRC + C+ APYFPP +P KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 116 SMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQ 164
           S+V+EA+AR+RDPVYG  GAI  LQ QVS+LQ QLA A+AE+  +Q Q
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]
BLAST of CmaCh04G012420 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 138.7 bits (348), Expect = 4.2e-33
Identity = 66/120 (55.00%), Postives = 85/120 (70.83%), Query Frame = 1 

Query: 46  SSPPPPAVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQEL 105
           S PP     ++PCAACK+LRRRC ++C  +PYF P EP KF   H+VFGASN+ K L E+
Sbjct: 34  SGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEV 93

Query: 106 PECQRTDAVSSMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQA 165
           PE QR DA +S+VYEA+ RLRDPVYG  GAI  LQ+QV  LQA+L   R+E+   + ++A
Sbjct: 94  PESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA 153

[Close]
BLAST of CmaCh04G012420 vs. NCBI nr
Match: gi|449451890|ref|XP_004143693.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 4.0e-94
Identity = 182/212 (85.85%), Postives = 194/212 (91.51%), Query Frame = 1 

Query: 1   MAYLAKCTN-APSTPITVSNHP---LSYSPISSSSAATTNFGSPPTSQPSSPPPPAVILS 60
           MAY+AKCTN +P TPI+V+N+P   LS+SP+SSS         PPTSQPSSPPPPAV+LS
Sbjct: 1   MAYVAKCTNNSPPTPISVNNNPNNPLSFSPMSSS---------PPTSQPSSPPPPAVVLS 60

Query: 61  PCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSS 120
           PCAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPECQRTDAVSS
Sbjct: 61  PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSS 120

Query: 121 MVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMR 180
           MVYEA+ARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQ QQANLLALICMEMR
Sbjct: 121 MVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMR 180

Query: 181 QSPDPVWPPQLPDTTCFLDDAALSSPWEPLWT 209
           QSP+PVW PQL DTTCFLDDA LSSPWEPLWT
Sbjct: 181 QSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 203

[Close]
BLAST of CmaCh04G012420 vs. NCBI nr
Match: gi|659090144|ref|XP_008445860.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 349.0 bits (894), Expect = 5.8e-93
Identity = 180/212 (84.91%), Postives = 192/212 (90.57%), Query Frame = 1 

Query: 1   MAYLAKCTN-APSTPITVSNHP---LSYSPISSSSAATTNFGSPPTSQPSSPPPPAVILS 60
           MAY+AKCTN +P TPI+ +N+P   LS+SP+SSS         PPTSQPSSPPPP V+LS
Sbjct: 1   MAYVAKCTNNSPPTPISFNNNPNNPLSFSPMSSS---------PPTSQPSSPPPPPVVLS 60

Query: 61  PCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSS 120
           PCAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPECQRTDAVSS
Sbjct: 61  PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSS 120

Query: 121 MVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMR 180
           MVYEA+ARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQ QQANLLALICMEMR
Sbjct: 121 MVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMR 180

Query: 181 QSPDPVWPPQLPDTTCFLDDAALSSPWEPLWT 209
           QSP+PVW PQL DTTCFLDDA LSSPWEPLWT
Sbjct: 181 QSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 203

[Close]
BLAST of CmaCh04G012420 vs. NCBI nr
Match: gi|700195287|gb|KGN50464.1| (hypothetical protein Csa_5G175870 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 1.4e-86
Identity = 161/170 (94.71%), Postives = 166/170 (97.65%), Query Frame = 1 

Query: 39  SPPTSQPSSPPPPAVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNI 98
           SPPTSQPSSPPPPAV+LSPCAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNI
Sbjct: 4   SPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNI 63

Query: 99  IKFLQELPECQRTDAVSSMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA 158
           IKFLQELPECQRTDAVSSMVYEA+ARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA
Sbjct: 64  IKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA 123

Query: 159 NMQHQQANLLALICMEMRQSPDPVWPPQLPDTTCFLDDAALSSPWEPLWT 209
           NMQ QQANLLALICMEMRQSP+PVW PQL DTTCFLDDA LSSPWEPLWT
Sbjct: 124 NMQQQQANLLALICMEMRQSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 173

[Close]
BLAST of CmaCh04G012420 vs. NCBI nr
Match: gi|593686006|ref|XP_007143674.1| (hypothetical protein PHAVU_007G092000g [Phaseolus vulgaris])

HSP 1 Score: 266.5 bits (680), Expect = 3.8e-68
Identity = 149/213 (69.95%), Postives = 168/213 (78.87%), Query Frame = 1 

Query: 8   TNAPSTPITVSNHP---LSYSPISSSSA----ATTNFGSP---PTSQPSSPPPPAVILSP 67
           T  PS PI +  H    LS SP SSSS+    + T F SP   P++ P SPPPP V++SP
Sbjct: 7   TTTPSPPIPIPIHVPSMLSNSPPSSSSSPPSHSPTPFPSPSPSPSAAPPSPPPP-VVVSP 66

Query: 68  CAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM 127
           CAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPE QR DAVSSM
Sbjct: 67  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSM 126

Query: 128 VYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMRQ 187
           VYEA+AR+RDPVYG AGAICQLQKQVSELQAQLAKA+AE+ NMQ QQANL+ALICMEM Q
Sbjct: 127 VYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLVALICMEMSQ 186

Query: 188 SPDP--VWPPQLPDTTCFLDDAALSSPWEPLWT 209
           S +   V P  L D +CF++D    + WEPLWT
Sbjct: 187 SQEQHVVQPQPLVDMSCFIEDNTFGTAWEPLWT 218

[Close]
BLAST of CmaCh04G012420 vs. NCBI nr
Match: gi|590564701|ref|XP_007009738.1| (LOB domain-containing protein 1 [Theobroma cacao])

HSP 1 Score: 263.8 bits (673), Expect = 2.5e-67
Identity = 152/215 (70.70%), Postives = 167/215 (77.67%), Query Frame = 1 

Query: 10  APSTPITVSNHPLSYSPISSSSAATTNF--GSP-PTSQPSSP-------PPPA----VIL 69
           A  +PI+VS  P SYSP SSSS  T ++  G P P SQ +SP       PPPA    V+L
Sbjct: 7   AAISPISVST-PFSYSPSSSSSPPTPHYSPGFPSPNSQSNSPKNSHQPPPPPASPPPVVL 66

Query: 70  SPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 129
           SPCAACKILRRRCVEKCVLAPYFPP+EP KFTIAHRVFGASNIIK LQELPE QR DAVS
Sbjct: 67  SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKSLQELPESQRADAVS 126

Query: 130 SMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEM 189
           SMVYEA AR+RDPVYG AGAICQLQKQVS+LQAQLAK +AE+  MQ QQANLLALICMEM
Sbjct: 127 SMVYEASARIRDPVYGCAGAICQLQKQVSDLQAQLAKTQAELVTMQCQQANLLALICMEM 186

Query: 190 RQSPDPV--WPPQLPDTTCFLDDAALSSPWEPLWT 209
            QS +P     P   DT+CFLDD+ L+S WEPLWT
Sbjct: 187 TQSKEPTSQQQPYSIDTSCFLDDSNLASAWEPLWT 220

The following BLAST results are available for this feature:
BLAST of CmaCh04G012420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD1_ARATH2.6e-5363.49LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1[more]
LBD11_ARATH3.0e-4965.43LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2[more]
LBD4_ARATH1.6e-3466.36LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1[more]
LBD12_ARATH2.1e-3464.81LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2[more]
LBD15_ARATH7.5e-3255.00LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2[more]
BLAST of CmaCh04G012420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNK9_CUCSA9.7e-8794.71Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175870 PE=4 SV=1[more]
V7BFQ1_PHAVU2.6e-6869.95Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G092000g PE=4 SV=1[more]
A0A061FNS0_THECC1.7e-6770.70LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_043081 PE=4 SV=1[more]
W9RZL7_9ROSA2.2e-6767.86Uncharacterized protein OS=Morus notabilis GN=L484_014124 PE=4 SV=1[more]
I1NHD1_SOYBN3.8e-6767.12Uncharacterized protein OS=Glycine max GN=GLYMA_20G177600 PE=4 SV=1[more]
BLAST of CmaCh04G012420 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07900.11.5e-5463.49 LOB domain-containing protein 1[more]
AT2G28500.11.7e-5065.43 LOB domain-containing protein 11[more]
AT1G31320.19.0e-3666.36 LOB domain-containing protein 4[more]
AT2G30130.11.2e-3564.81 Lateral organ boundaries (LOB) domain family protein[more]
AT2G40470.14.2e-3355.00 LOB domain-containing protein 15[more]
BLAST of CmaCh04G012420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451890|ref|XP_004143693.1|4.0e-9485.85PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus][more]
gi|659090144|ref|XP_008445860.1|5.8e-9384.91PREDICTED: LOB domain-containing protein 1-like [Cucumis melo][more]
gi|700195287|gb|KGN50464.1|1.4e-8694.71hypothetical protein Csa_5G175870 [Cucumis sativus][more]
gi|593686006|ref|XP_007143674.1|3.8e-6869.95hypothetical protein PHAVU_007G092000g [Phaseolus vulgaris][more]
gi|590564701|ref|XP_007009738.1|2.5e-6770.70LOB domain-containing protein 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005951 carbamoyl-phosphate synthase complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G012420.1CmaCh04G012420.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 57..154
score: 4.6
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 56..157
score: 25
NoneNo IPR availableunknownCoilCoilcoord: 136..170
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 31..207
score: 2.1E
NoneNo IPR availablePANTHERPTHR31301:SF14LOB DOMAIN-CONTAINING PROTEIN 1-RELATEDcoord: 31..207
score: 2.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G012420Cucsa.166030Cucumber (Gy14) v1cgycmaB0472
CmaCh04G012420Cla020073Watermelon (97103) v1cmawmB723
CmaCh04G012420Csa5G175870Cucumber (Chinese Long) v2cmacuB746
CmaCh04G012420MELO3C011730Melon (DHL92) v3.5.1cmameB652
CmaCh04G012420ClCG02G013910Watermelon (Charleston Gray)cmawcgB641
CmaCh04G012420CSPI05G08810Wild cucumber (PI 183967)cmacpiB756
CmaCh04G012420CmoCh20G005020Cucurbita moschata (Rifu)cmacmoB720
CmaCh04G012420CmoCh04G002770Cucurbita moschata (Rifu)cmacmoB731
CmaCh04G012420CmoCh02G008700Cucurbita moschata (Rifu)cmacmoB723
CmaCh04G012420CmoCh04G013150Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G012420Lsi10G012950Bottle gourd (USVL1VR-Ls)cmalsiB631
CmaCh04G012420Lsi04G008120Bottle gourd (USVL1VR-Ls)cmalsiB676
CmaCh04G012420Cp4.1LG01g04270Cucurbita pepo (Zucchini)cmacpeB723
CmaCh04G012420Cp4.1LG01g10320Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G012420Cp4.1LG05g08710Cucurbita pepo (Zucchini)cmacpeB752
CmaCh04G012420MELO3C011730.2Melon (DHL92) v3.6.1cmamedB739
CmaCh04G012420CsaV3_5G006250Cucumber (Chinese Long) v3cmacucB0884
CmaCh04G012420CsaV3_6G021580Cucumber (Chinese Long) v3cmacucB0916
CmaCh04G012420Cla97C02G046930Watermelon (97103) v2cmawmbB742
CmaCh04G012420Cla97C02G039560Watermelon (97103) v2cmawmbB740
CmaCh04G012420Bhi07G000881Wax gourdcmawgoB0892
CmaCh04G012420CsGy5G006200Cucumber (Gy14) v2cgybcmaB673
CmaCh04G012420Carg25670Silver-seed gourdcarcmaB1180
CmaCh04G012420Carg02065Silver-seed gourdcarcmaB1170
CmaCh04G012420Carg20239Silver-seed gourdcarcmaB0428
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G012420CmaCh20G004670Cucurbita maxima (Rimu)cmacmaB487
CmaCh04G012420CmaCh04G002720Cucurbita maxima (Rimu)cmacmaB531
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G012420Cucumber (Chinese Long) v3cmacucB0853