CmoCh04G013150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G013150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	LOB domain-containing protein 1
Location	Cmo_Chr04 : 6708105 .. 6709152 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGANTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTCCAAACCACCCCTTATCTTACTCCCCAATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACTTCTCAGCCGTCGTCTCCCCCGCCGCCTACGGTGATCCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCATATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGTATGCCCAAAAATTTAATTTTTTTTATTAAATTAATTCACACCCACATTTTGAAATTCCCCAATTTGTCCTTCCAATCTATTTTTGTTTAGAGATTAAGGTTAGGAAATTATTATTAGTAATTCCATGTATTGTAGAAAAAAAACATTAATTAATTAACTTTTTTTGGTATTTTTAAAAACAAACAAAAGGGTATAGTCGGATTTAACTAAAAAAAAAAAAAAAGAAATGAGTTGATTTGACTTAACTGGGTTTGACTTTTGATGGGACATAATCCCGTAATCAATGCAACTTTGGTCTCTCTAATTTTCCTCTAAACCTTATTATTAAACAACTAATTAAAGATTTAACTTTTTCTTAATATTTGCAGGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGCCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAGGTGGCTAATATGCAGCACCAACAAGCCAACTTACTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCGTCGACACTACCTGCTTCCTCGACGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGATTTCAAAGTTAATTGTTTTGGAATGATATTTAATTTGGGTTAGAGAAGGAT

mRNA sequence

ATGGANTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTCCAAACCACCCCTTATCTTACTCCCCAATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACTTCTCAGCCGTCGTCTCCCCCGCCGCCTACGGTGATCCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCATATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGCCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAGGTGGCTAATATGCAGCACCAACAAGCCAACTTACTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCGTCGACACTACCTGCTTCCTCGACGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGATTTCAAAGTTAATTGTTTTGGAATGATATTTAATTTGGGTTAGAGAAGGAT

Coding sequence (CDS)

ATGGANTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTCCAAACCACCCCTTATCTTACTCCCCAATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACTTCTCAGCCGTCGTCTCCCCCGCCGCCTACGGTGATCCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCATATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGCCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAGGTGGCTAATATGCAGCACCAACAAGCCAACTTACTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCGTCGACACTACCTGCTTCCTCGACGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGA

Homology

[Close]

BLAST of CmoCh04G013150 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-53
Identity = 120/189 (63.49%), Postives = 141/189 (74.60%), Query Frame = 1


Query: 28  SSSSAATTNFGSPPTSQPSSPPP---PTVILSPCAACKILRRRCVEKCVLAPYFPPSEPL 87
           S +S ATT    P  S  SSPPP   P V+LSPCAACKILRRRC E+CVLAPYFPP++P 
Sbjct: 5   SDASVATT----PIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPA 64

Query: 88  KFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVS 147
           KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYEA AR+RDPVYG AGAI  LQ+QVS
Sbjct: 65  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVS 124

Query: 148 ELQAQLAKARAEVANMQHQQANLLALIC-MEMRQSPDPVWPPQLVDTTCFLDDAALSSP- 207
           ELQAQLAKA+ E+ NMQ Q++NLL LI  M+ +Q  +        +   FL+D + ++  
Sbjct: 125 ELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMSFESNDLGFLEDKSNTNSS 184

Query: 208 ---WEPLWT 209
              W+PLWT
Sbjct: 185 MLWWDPLWT 189

[Close]

BLAST of CmoCh04G013150 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 199.1 bits (505), Expect = 4.7e-50
Identity = 103/147 (70.07%), Postives = 120/147 (81.63%), Query Frame = 1


Query: 25  SPISSSSAATTNFGSPPTSQPSSPPPPTVILSPCAACKILRRRCVEKCVLAPYFPPSEPL 84
           +P++S S  ++    PP   P  PP P V+LSPCAACKILRRRC +KCVLAPYFPP++P 
Sbjct: 26  TPVNSPSPTSS---PPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPA 85

Query: 85  KFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVS 144
           KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYEA AR+RDPVYG AGAI  LQ+QVS
Sbjct: 86  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVS 145

Query: 145 ELQAQLAKARAEVANMQHQQANLLALI 172
           ELQAQLAK + E+  MQ Q+++LL LI
Sbjct: 146 ELQAQLAKTQVELVGMQLQRSSLLELI 169

[Close]

BLAST of CmoCh04G013150 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-35
Identity = 74/110 (67.27%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 56  SPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 115
           SPCAACK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 116 SMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQA 166
           SMVYEANAR+RDPVYG  GAI  LQ+Q+  LQAQLA A+AEV +++ +Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of CmoCh04G013150 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 5.5e-35
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 1


Query: 56  SPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 115
           SPCA+CK+LRRRC + C+ APYFPP +P KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 116 SMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQ 164
           S+V+EANAR+RDPVYG  GAI  LQ QVS+LQ QLA A+AE+  +Q Q
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of CmoCh04G013150 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 8.8e-33
Identity = 69/123 (56.10%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 44  QPSSPPPPTV-ILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFL 103
           +P S PP T+  ++PCAACK+LRRRC ++C  +PYF P EP KF   H+VFGASN+ K L
Sbjct: 31  RPMSGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKML 90

Query: 104 QELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQH 163
            E+PE QR DA +S+VYEAN RLRDPVYG  GAI  LQ+QV  LQA+L   R+E+   + 
Sbjct: 91  MEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQ 150

Query: 164 QQA 166
           ++A
Sbjct: 151 REA 153

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BLAST of CmoCh04G013150 vs. TrEMBL
Match: A0A0A0KNK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175870 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.1e-87
Identity = 162/170 (95.29%), Postives = 166/170 (97.65%), Query Frame = 1


Query: 39  SPPTSQPSSPPPPTVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNI 98
           SPPTSQPSSPPPP V+LSPCAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNI
Sbjct: 4   SPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNI 63

Query: 99  IKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA 158
           IKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA
Sbjct: 64  IKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA 123

Query: 159 NMQHQQANLLALICMEMRQSPDPVWPPQLVDTTCFLDDAALSSPWEPLWT 209
           NMQ QQANLLALICMEMRQSP+PVW PQLVDTTCFLDDA LSSPWEPLWT
Sbjct: 124 NMQQQQANLLALICMEMRQSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 173

[Close]

BLAST of CmoCh04G013150 vs. TrEMBL
Match: V7BFQ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G092000g PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 7.4e-71
Identity = 152/213 (71.36%), Postives = 170/213 (79.81%), Query Frame = 1


Query: 8   TNAPSTPITVPNHP---LSYSPISSSSA----ATTNFGSP---PTSQPSSPPPPTVILSP 67
           T  PS PI +P H    LS SP SSSS+    + T F SP   P++ P SPPPP V++SP
Sbjct: 7   TTTPSPPIPIPIHVPSMLSNSPPSSSSSPPSHSPTPFPSPSPSPSAAPPSPPPP-VVVSP 66

Query: 68  CAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM 127
           CAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPE QR DAVSSM
Sbjct: 67  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSM 126

Query: 128 VYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMRQ 187
           VYEANAR+RDPVYG AGAICQLQKQVSELQAQLAKA+AE+ NMQ QQANL+ALICMEM Q
Sbjct: 127 VYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLVALICMEMSQ 186

Query: 188 SPDP--VWPPQLVDTTCFLDDAALSSPWEPLWT 209
           S +   V P  LVD +CF++D    + WEPLWT
Sbjct: 187 SQEQHVVQPQPLVDMSCFIEDNTFGTAWEPLWT 218

[Close]

BLAST of CmoCh04G013150 vs. TrEMBL
Match: A0A151U637_CAJCA (LOB domain-containing protein 1 OS=Cajanus cajan GN=KK1_007445 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.4e-69
Identity = 151/220 (68.64%), Postives = 168/220 (76.36%), Query Frame = 1


Query: 1   MXYLAKCTN-APSTPITVPNHPLSYSPISSSSAATTNF---------GSPPTSQPSSPPP 60
           M Y  K T  +P  PI VP   LS SP SSSS+  +           GSPP + PS PPP
Sbjct: 1   MEYKVKTTTTSPPIPIHVPTM-LSNSPPSSSSSPPSQSHTPFPSPSQGSPPAAPPSPPPP 60

Query: 61  PTVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQR 120
             V++SPCAACKILRRRCVEKCVLAPYFPP++P+KFTIAHRVFGASNIIKFLQELPE QR
Sbjct: 61  --VVVSPCAACKILRRRCVEKCVLAPYFPPTDPIKFTIAHRVFGASNIIKFLQELPESQR 120

Query: 121 TDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLAL 180
            DAVSSMVYEANAR+RDPVYG AGAICQLQKQVSELQAQLAKA+AEV NMQ QQANL+AL
Sbjct: 121 ADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVAL 180

Query: 181 ICMEMRQSPDP--VWPPQLVDTTCFLDDAALSSPWEPLWT 209
           ICMEM QS D   + P   VD +CF++D    + WEPLWT
Sbjct: 181 ICMEMSQSQDQNMLQPQPHVDMSCFIEDNTFGTAWEPLWT 217

[Close]

BLAST of CmoCh04G013150 vs. TrEMBL
Match: A0A0B2NUM7_GLYSO (LOB domain-containing protein 1 OS=Glycine soja GN=glysoja_000489 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.1e-69
Identity = 151/223 (67.71%), Postives = 170/223 (76.23%), Query Frame = 1


Query: 1   MXYLAKCTNA---PSTPITVPNHPLSYSPISSSSA----ATTNFGSPPTSQPSS------ 60
           M Y  K T +   P  PI +P   LS SP SSSS+    + T F SP    PS+      
Sbjct: 1   MEYKVKTTTSTPSPPIPIHLPTM-LSNSPPSSSSSPPSQSPTPFPSPSQGSPSAAPPSPP 60

Query: 61  PPPPTVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPE 120
           PPPP V++SPCAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPE
Sbjct: 61  PPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPE 120

Query: 121 CQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANL 180
            QR DAVSSMVYEANAR+RDPVYG AGAICQLQKQVSELQAQLAKA+AEV NMQ QQANL
Sbjct: 121 SQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANL 180

Query: 181 LALICMEMRQSPDP--VWPPQLVDTTCFLDDAALSSPWEPLWT 209
           +ALICMEM QS +   + P   VD +CF++D +  + WEPLWT
Sbjct: 181 VALICMEMSQSQEQHVLQPQPHVDMSCFIEDNSFGTAWEPLWT 222

[Close]

BLAST of CmoCh04G013150 vs. TrEMBL
Match: I1NHD1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G177600 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.1e-69
Identity = 151/223 (67.71%), Postives = 170/223 (76.23%), Query Frame = 1


Query: 1   MXYLAKCTNA---PSTPITVPNHPLSYSPISSSSA----ATTNFGSPPTSQPSS------ 60
           M Y  K T +   P  PI +P   LS SP SSSS+    + T F SP    PS+      
Sbjct: 1   MEYKVKTTTSTPSPPIPIHLPTM-LSNSPPSSSSSPPSQSPTPFPSPSQGSPSAAPPSPP 60

Query: 61  PPPPTVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPE 120
           PPPP V++SPCAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPE
Sbjct: 61  PPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPE 120

Query: 121 CQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANL 180
            QR DAVSSMVYEANAR+RDPVYG AGAICQLQKQVSELQAQLAKA+AEV NMQ QQANL
Sbjct: 121 SQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANL 180

Query: 181 LALICMEMRQSPDP--VWPPQLVDTTCFLDDAALSSPWEPLWT 209
           +ALICMEM QS +   + P   VD +CF++D +  + WEPLWT
Sbjct: 181 VALICMEMSQSQEQHVLQPQPHVDMSCFIEDNSFGTAWEPLWT 222

[Close]

BLAST of CmoCh04G013150 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 210.7 bits (535), Expect = 8.7e-55
Identity = 120/189 (63.49%), Postives = 141/189 (74.60%), Query Frame = 1


Query: 28  SSSSAATTNFGSPPTSQPSSPPP---PTVILSPCAACKILRRRCVEKCVLAPYFPPSEPL 87
           S +S ATT    P  S  SSPPP   P V+LSPCAACKILRRRC E+CVLAPYFPP++P 
Sbjct: 5   SDASVATT----PIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPA 64

Query: 88  KFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVS 147
           KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYEA AR+RDPVYG AGAI  LQ+QVS
Sbjct: 65  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVS 124

Query: 148 ELQAQLAKARAEVANMQHQQANLLALIC-MEMRQSPDPVWPPQLVDTTCFLDDAALSSP- 207
           ELQAQLAKA+ E+ NMQ Q++NLL LI  M+ +Q  +        +   FL+D + ++  
Sbjct: 125 ELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMSFESNDLGFLEDKSNTNSS 184

Query: 208 ---WEPLWT 209
              W+PLWT
Sbjct: 185 MLWWDPLWT 189

[Close]

BLAST of CmoCh04G013150 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 199.1 bits (505), Expect = 2.6e-51
Identity = 103/147 (70.07%), Postives = 120/147 (81.63%), Query Frame = 1


Query: 25  SPISSSSAATTNFGSPPTSQPSSPPPPTVILSPCAACKILRRRCVEKCVLAPYFPPSEPL 84
           +P++S S  ++    PP   P  PP P V+LSPCAACKILRRRC +KCVLAPYFPP++P 
Sbjct: 26  TPVNSPSPTSS---PPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPA 85

Query: 85  KFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVS 144
           KFTIAHRVFGASNIIKFLQELPE QRTDAV+SMVYEA AR+RDPVYG AGAI  LQ+QVS
Sbjct: 86  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVS 145

Query: 145 ELQAQLAKARAEVANMQHQQANLLALI 172
           ELQAQLAK + E+  MQ Q+++LL LI
Sbjct: 146 ELQAQLAKTQVELVGMQLQRSSLLELI 169

[Close]

BLAST of CmoCh04G013150 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-36
Identity = 74/110 (67.27%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 56  SPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 115
           SPCAACK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 116 SMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQA 166
           SMVYEANAR+RDPVYG  GAI  LQ+Q+  LQAQLA A+AEV +++ +Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of CmoCh04G013150 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-36
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 1


Query: 56  SPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVS 115
           SPCA+CK+LRRRC + C+ APYFPP +P KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 116 SMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQ 164
           S+V+EANAR+RDPVYG  GAI  LQ QVS+LQ QLA A+AE+  +Q Q
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of CmoCh04G013150 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-34
Identity = 69/123 (56.10%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 44  QPSSPPPPTV-ILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFL 103
           +P S PP T+  ++PCAACK+LRRRC ++C  +PYF P EP KF   H+VFGASN+ K L
Sbjct: 31  RPMSGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKML 90

Query: 104 QELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQH 163
            E+PE QR DA +S+VYEAN RLRDPVYG  GAI  LQ+QV  LQA+L   R+E+   + 
Sbjct: 91  MEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQ 150

Query: 164 QQA 166
           ++A
Sbjct: 151 REA 153

[Close]

BLAST of CmoCh04G013150 vs. NCBI nr
Match: gi|449451890|ref|XP_004143693.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 357.1 bits (915), Expect = 2.1e-95
Identity = 183/212 (86.32%), Postives = 193/212 (91.04%), Query Frame = 1


Query: 1   MXYLAKCTN-APSTPITV---PNHPLSYSPISSSSAATTNFGSPPTSQPSSPPPPTVILS 60
           M Y+AKCTN +P TPI+V   PN+PLS+SP+SSS         PPTSQPSSPPPP V+LS
Sbjct: 1   MAYVAKCTNNSPPTPISVNNNPNNPLSFSPMSSS---------PPTSQPSSPPPPAVVLS 60

Query: 61  PCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSS 120
           PCAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPECQRTDAVSS
Sbjct: 61  PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSS 120

Query: 121 MVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMR 180
           MVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQ QQANLLALICMEMR
Sbjct: 121 MVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMR 180

Query: 181 QSPDPVWPPQLVDTTCFLDDAALSSPWEPLWT 209
           QSP+PVW PQLVDTTCFLDDA LSSPWEPLWT
Sbjct: 181 QSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 203

[Close]

BLAST of CmoCh04G013150 vs. NCBI nr
Match: gi|659090144|ref|XP_008445860.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 354.8 bits (909), Expect = 1.1e-94
Identity = 182/212 (85.85%), Postives = 192/212 (90.57%), Query Frame = 1


Query: 1   MXYLAKCTN-APSTPITV---PNHPLSYSPISSSSAATTNFGSPPTSQPSSPPPPTVILS 60
           M Y+AKCTN +P TPI+    PN+PLS+SP+SSS         PPTSQPSSPPPP V+LS
Sbjct: 1   MAYVAKCTNNSPPTPISFNNNPNNPLSFSPMSSS---------PPTSQPSSPPPPPVVLS 60

Query: 61  PCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSS 120
           PCAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPECQRTDAVSS
Sbjct: 61  PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSS 120

Query: 121 MVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMR 180
           MVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQ QQANLLALICMEMR
Sbjct: 121 MVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMR 180

Query: 181 QSPDPVWPPQLVDTTCFLDDAALSSPWEPLWT 209
           QSP+PVW PQLVDTTCFLDDA LSSPWEPLWT
Sbjct: 181 QSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 203

[Close]

BLAST of CmoCh04G013150 vs. NCBI nr
Match: gi|700195287|gb|KGN50464.1| (hypothetical protein Csa_5G175870 [Cucumis sativus])

HSP 1 Score: 330.9 bits (847), Expect = 1.6e-87
Identity = 162/170 (95.29%), Postives = 166/170 (97.65%), Query Frame = 1


Query: 39  SPPTSQPSSPPPPTVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNI 98
           SPPTSQPSSPPPP V+LSPCAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNI
Sbjct: 4   SPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNI 63

Query: 99  IKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA 158
           IKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA
Sbjct: 64  IKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVA 123

Query: 159 NMQHQQANLLALICMEMRQSPDPVWPPQLVDTTCFLDDAALSSPWEPLWT 209
           NMQ QQANLLALICMEMRQSP+PVW PQLVDTTCFLDDA LSSPWEPLWT
Sbjct: 124 NMQQQQANLLALICMEMRQSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 173

[Close]

BLAST of CmoCh04G013150 vs. NCBI nr
Match: gi|593686006|ref|XP_007143674.1| (hypothetical protein PHAVU_007G092000g [Phaseolus vulgaris])

HSP 1 Score: 275.0 bits (702), Expect = 1.1e-70
Identity = 152/213 (71.36%), Postives = 170/213 (79.81%), Query Frame = 1


Query: 8   TNAPSTPITVPNHP---LSYSPISSSSA----ATTNFGSP---PTSQPSSPPPPTVILSP 67
           T  PS PI +P H    LS SP SSSS+    + T F SP   P++ P SPPPP V++SP
Sbjct: 7   TTTPSPPIPIPIHVPSMLSNSPPSSSSSPPSHSPTPFPSPSPSPSAAPPSPPPP-VVVSP 66

Query: 68  CAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM 127
           CAACKILRRRCVEKCVLAPYFPP++PLKFTIAHRVFGASNIIKFLQELPE QR DAVSSM
Sbjct: 67  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSM 126

Query: 128 VYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMRQ 187
           VYEANAR+RDPVYG AGAICQLQKQVSELQAQLAKA+AE+ NMQ QQANL+ALICMEM Q
Sbjct: 127 VYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLVALICMEMSQ 186

Query: 188 SPDP--VWPPQLVDTTCFLDDAALSSPWEPLWT 209
           S +   V P  LVD +CF++D    + WEPLWT
Sbjct: 187 SQEQHVVQPQPLVDMSCFIEDNTFGTAWEPLWT 218

[Close]

BLAST of CmoCh04G013150 vs. NCBI nr
Match: gi|1012363571|gb|KYP74754.1| (LOB domain-containing protein 1 [Cajanus cajan])

HSP 1 Score: 270.8 bits (691), Expect = 2.0e-69
Identity = 151/220 (68.64%), Postives = 168/220 (76.36%), Query Frame = 1


Query: 1   MXYLAKCTN-APSTPITVPNHPLSYSPISSSSAATTNF---------GSPPTSQPSSPPP 60
           M Y  K T  +P  PI VP   LS SP SSSS+  +           GSPP + PS PPP
Sbjct: 1   MEYKVKTTTTSPPIPIHVPTM-LSNSPPSSSSSPPSQSHTPFPSPSQGSPPAAPPSPPPP 60

Query: 61  PTVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQR 120
             V++SPCAACKILRRRCVEKCVLAPYFPP++P+KFTIAHRVFGASNIIKFLQELPE QR
Sbjct: 61  --VVVSPCAACKILRRRCVEKCVLAPYFPPTDPIKFTIAHRVFGASNIIKFLQELPESQR 120

Query: 121 TDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLAL 180
            DAVSSMVYEANAR+RDPVYG AGAICQLQKQVSELQAQLAKA+AEV NMQ QQANL+AL
Sbjct: 121 ADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVAL 180

Query: 181 ICMEMRQSPDP--VWPPQLVDTTCFLDDAALSSPWEPLWT 209
           ICMEM QS D   + P   VD +CF++D    + WEPLWT
Sbjct: 181 ICMEMSQSQDQNMLQPQPHVDMSCFIEDNTFGTAWEPLWT 217

The following BLAST results are available for this feature:

BLAST of CmoCh04G013150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD1_ARATH	1.5e-53	63.49	LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1	[more]
LBD11_ARATH	4.7e-50	70.07	LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2	[more]
LBD4_ARATH	4.2e-35	67.27	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD12_ARATH	5.5e-35	65.74	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD15_ARATH	8.8e-33	56.10	LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2	[more]

BLAST of CmoCh04G013150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNK9_CUCSA	1.1e-87	95.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175870 PE=4 SV=1	[more]
V7BFQ1_PHAVU	7.4e-71	71.36	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G092000g PE=4 SV=1	[more]
A0A151U637_CAJCA	1.4e-69	68.64	LOB domain-containing protein 1 OS=Cajanus cajan GN=KK1_007445 PE=4 SV=1	[more]
A0A0B2NUM7_GLYSO	4.1e-69	67.71	LOB domain-containing protein 1 OS=Glycine soja GN=glysoja_000489 PE=4 SV=1	[more]
I1NHD1_SOYBN	4.1e-69	67.71	Uncharacterized protein OS=Glycine max GN=GLYMA_20G177600 PE=4 SV=1	[more]

BLAST of CmoCh04G013150 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07900.1	8.7e-55	63.49	LOB domain-containing protein 1	[more]
AT2G28500.1	2.6e-51	70.07	LOB domain-containing protein 11	[more]
AT1G31320.1	2.4e-36	67.27	LOB domain-containing protein 4	[more]
AT2G30130.1	3.1e-36	65.74	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G40470.1	5.0e-34	56.10	LOB domain-containing protein 15	[more]

BLAST of CmoCh04G013150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451890\|ref\|XP_004143693.1\|	2.1e-95	86.32	PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]	[more]
gi\|659090144\|ref\|XP_008445860.1\|	1.1e-94	85.85	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]
gi\|700195287\|gb\|KGN50464.1\|	1.6e-87	95.29	hypothetical protein Csa_5G175870 [Cucumis sativus]	[more]
gi\|593686006\|ref\|XP_007143674.1\|	1.1e-70	71.36	hypothetical protein PHAVU_007G092000g [Phaseolus vulgaris]	[more]
gi\|1012363571\|gb\|KYP74754.1\|	2.0e-69	68.64	LOB domain-containing protein 1 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005951	carbamoyl-phosphate synthase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G013150.1	CmoCh04G013150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 57..154 score: 2.4
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 56..157 score: 25
None	No IPR available	unknown	Coil	Coil	coord: 136..170 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 31..207 score: 5.3E
None	No IPR available	PANTHER	PTHR31301:SF14	LOB DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 31..207 score: 5.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G013150	Cucsa.166030	Cucumber (Gy14) v1	cgycmoB0475
CmoCh04G013150	CmaCh04G012420	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G013150	CmaCh04G002720	Cucurbita maxima (Rimu)	cmacmoB730
CmoCh04G013150	CmaCh15G004330	Cucurbita maxima (Rimu)	cmacmoB306
CmoCh04G013150	Cla004725	Watermelon (97103) v1	cmowmB645
CmoCh04G013150	Cla020073	Watermelon (97103) v1	cmowmB719
CmoCh04G013150	Csa5G175870	Cucumber (Chinese Long) v2	cmocuB736
CmoCh04G013150	Csa5G496470	Cucumber (Chinese Long) v2	cmocuB750
CmoCh04G013150	MELO3C025504	Melon (DHL92) v3.5.1	cmomeB622
CmoCh04G013150	MELO3C011730	Melon (DHL92) v3.5.1	cmomeB644
CmoCh04G013150	ClCG02G013910	Watermelon (Charleston Gray)	cmowcgB643
CmoCh04G013150	CSPI05G08810	Wild cucumber (PI 183967)	cmocpiB746
CmoCh04G013150	CSPI05G16950	Wild cucumber (PI 183967)	cmocpiB756
CmoCh04G013150	Lsi04G008120	Bottle gourd (USVL1VR-Ls)	cmolsiB669
CmoCh04G013150	Lsi02G016970	Bottle gourd (USVL1VR-Ls)	cmolsiB637
CmoCh04G013150	Lsi10G012950	Bottle gourd (USVL1VR-Ls)	cmolsiB620
CmoCh04G013150	Cp4.1LG01g04270	Cucurbita pepo (Zucchini)	cmocpeB675
CmoCh04G013150	Cp4.1LG01g10320	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G013150	Cp4.1LG05g08710	Cucurbita pepo (Zucchini)	cmocpeB706
CmoCh04G013150	MELO3C011730.2	Melon (DHL92) v3.6.1	cmomedB734
CmoCh04G013150	CsaV3_5G025960	Cucumber (Chinese Long) v3	cmocucB0887
CmoCh04G013150	CsaV3_6G021580	Cucumber (Chinese Long) v3	cmocucB0907
CmoCh04G013150	CsaV3_5G006250	Cucumber (Chinese Long) v3	cmocucB0872
CmoCh04G013150	Cla97C02G046930	Watermelon (97103) v2	cmowmbB715
CmoCh04G013150	Cla97C02G039560	Watermelon (97103) v2	cmowmbB713
CmoCh04G013150	Bhi07G000881	Wax gourd	cmowgoB0891
CmoCh04G013150	CsGy5G006200	Cucumber (Gy14) v2	cgybcmoB651
CmoCh04G013150	Carg25670	Silver-seed gourd	carcmoB1149
CmoCh04G013150	Carg02065	Silver-seed gourd	carcmoB1138
CmoCh04G013150	Carg20239	Silver-seed gourd	carcmoB0423

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G013150	CmoCh15G004440	Cucurbita moschata (Rifu)	cmocmoB258
CmoCh04G013150	CmoCh02G008700	Cucurbita moschata (Rifu)	cmocmoB434
CmoCh04G013150	CmoCh04G002770	Cucurbita moschata (Rifu)	cmocmoB464

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G013150	Cucumber (Chinese Long) v3	cmocucB0840