CmaCh15G004330 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G004330
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLOB domain protein 11
LocationCma_Chr15 : 1939997 .. 1940900 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCTCCGCCACTGCCGCCGATGGTAGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTTCGCCGAAGATGCGTCGATGAGTGTGTTTTAGCGCCTTATTTTCCTCCCACTGAGCCACTCAAGTTCGCCGCTGTGCATAGAATATTTGGAGCCAGCAACGTAATTAAGTTTCTGCAGGTAAATGTTCCGTTGATTATAAACTCATGATTATTCCTAAATTAGTTAACTTTCTTCTAACAATTTTTATACCATTCTTTTTAATTTCATTAGCAAGATAAAATATATAAAATTAATCAAATTTTAGTAAAAAACACTTTAAAGTTTATGTTTAACAAAATTATTATTTCGATGCTAAACTAGTTTAGTAATATTTAATTTTTATTAAAATTAGTAAAGTTTGAGAAATATATCATTATTTTTAATTAAAATAAGATAAATCCTCGAAATAATGAAATTAGAGTAAATATTGATGTCTAGTCAAATTTATAAGGTAGTTTTTTTTTTTTTTTCTTACGGATTCGTATGGTTACGGATATGAATGCAGGAACTTCCAGGGAACCAGAGAGCAGATGCTACGAGCAGTTTAGTATATGAAGCGAACGCTAGGATTCGAGACCCGGTCTATGGTTGCACTGGTTCAATCTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGCGCAACTAGCCCTGGCTAAGGCTGAGGTTCACAAGATGCAAGCTCAAAATGCAAATTTGTTAGCCCTAATATGCACGGAAACAAGTCAAGTTCAAGTGGAAGGTCGAGAAGTCCCAGTCTTGCGCCAAGACCACTTTCCATTTACTGATTTAAACAGTATTCCACATAATTACAAATCTTCCAATATTGTTTGGGACTCCTCATGGACTTCATCATCGTTCTAA

mRNA sequence

ATGCAATCTCCGCCACTGCCGCCGATGGTAGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTTCGCCGAAGATGCGTCGATGAGTGTGTTTTAGCGCCTTATTTTCCTCCCACTGAGCCACTCAAGTTCGCCGCTGTGCATAGAATATTTGGAGCCAGCAACGTAATTAAGTTTCTGCAGGAACTTCCAGGGAACCAGAGAGCAGATGCTACGAGCAGTTTAGTATATGAAGCGAACGCTAGGATTCGAGACCCGGTCTATGGTTGCACTGGTTCAATCTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGCGCAACTAGCCCTGGCTAAGGCTGAGGTTCACAAGATGCAAGCTCAAAATGCAAATTTGTTAGCCCTAATATGCACGGAAACAAGTCAAGTTCAAGTGGAAGGTCGAGAAGTCCCAGTCTTGCGCCAAGACCACTTTCCATTTACTGATTTAAACAGTATTCCACATAATTACAAATCTTCCAATATTGTTTGGGACTCCTCATGGACTTCATCATCGTTCTAA

Coding sequence (CDS)

ATGCAATCTCCGCCACTGCCGCCGATGGTAGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTTCGCCGAAGATGCGTCGATGAGTGTGTTTTAGCGCCTTATTTTCCTCCCACTGAGCCACTCAAGTTCGCCGCTGTGCATAGAATATTTGGAGCCAGCAACGTAATTAAGTTTCTGCAGGAACTTCCAGGGAACCAGAGAGCAGATGCTACGAGCAGTTTAGTATATGAAGCGAACGCTAGGATTCGAGACCCGGTCTATGGTTGCACTGGTTCAATCTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGCGCAACTAGCCCTGGCTAAGGCTGAGGTTCACAAGATGCAAGCTCAAAATGCAAATTTGTTAGCCCTAATATGCACGGAAACAAGTCAAGTTCAAGTGGAAGGTCGAGAAGTCCCAGTCTTGCGCCAAGACCACTTTCCATTTACTGATTTAAACAGTATTCCACATAATTACAAATCTTCCAATATTGTTTGGGACTCCTCATGGACTTCATCATCGTTCTAA

Protein sequence

MQSPPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELPGNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNANLLALICTETSQVQVEGREVPVLRQDHFPFTDLNSIPHNYKSSNIVWDSSWTSSSF
Homology
[Close]
BLAST of CmaCh15G004330 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.7e-48
Identity = 104/175 (59.43%), Postives = 120/175 (68.57%), Query Frame = 1 

Query: 4   PPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELP 63
           P L P VVLSPCAACKILRRRC + CVLAPYFPPT+P KF   HR+FGASN+IKFLQELP
Sbjct: 23  PSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELP 82

Query: 64  GNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNAN 123
            +QR DA +S+VYEA ARIRDPVYGC G+I+ LQ QVSELQAQLA A+ E+  MQ Q +N
Sbjct: 83  ESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSN 142

Query: 124 LLALICTETSQVQVEGREVPVLRQDHFPF--TDLNSI--PHNYKSSNIVWDSSWT 175
           LL LI     Q + E        QD+  F   DL  +    N  SS + WD  WT
Sbjct: 143 LLELIYNMDQQQKQE--------QDNMSFESNDLGFLEDKSNTNSSMLWWDPLWT 189

[Close]
BLAST of CmaCh15G004330 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 5.9e-46
Identity = 104/190 (54.74%), Postives = 124/190 (65.26%), Query Frame = 1 

Query: 2   QSPPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQE 61
           Q PP PP VVLSPCAACKILRRRC D+CVLAPYFPPT+P KF   HR+FGASN+IKFLQE
Sbjct: 44  QQPPQPP-VVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQE 103

Query: 62  LPGNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQN 121
           LP +QR DA +S+VYEA AR+RDPVYGC G+I+ LQ QVSELQAQLA  + E+  MQ Q 
Sbjct: 104 LPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 163

Query: 122 ANLLALICTETS---QVQVEGREVPVLRQ-----DHF---PFTDLNSI------PHNYKS 175
           ++LL LI         VQ +G++           D F   P  + N +       +N  S
Sbjct: 164 SSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFISSPDEESNDLGFLEDNNNNNNS 223

[Close]
BLAST of CmaCh15G004330 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 162.2 bits (409), Expect = 5.4e-39
Identity = 75/109 (68.81%), Postives = 92/109 (84.40%), Query Frame = 1 

Query: 13  SPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELPGNQRADATS 72
           SPCA+CK+LRRRC  +C+ APYFPP +P KFA VH++FGASNV K LQELP +QRADA +
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 73  SLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQN 122
           SLV+EANAR+RDPVYGC G+I  LQNQVS+LQ QLA+A+AE+  +Q QN
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQN 115

[Close]
BLAST of CmaCh15G004330 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.3e-37
Identity = 77/112 (68.75%), Postives = 88/112 (78.57%), Query Frame = 1 

Query: 13  SPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELPGNQRADATS 72
           SPCAACK+LRRRC  +CV +PYFP  EP KFA VHR+FGASNV K LQELP +QR DA S
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 73  SLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAE-VHKMQAQNAN 124
           S+VYEANAR+RDPVYGC G+I  LQ Q+  LQAQLALA+AE VH    Q+ N
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTN 123

[Close]
BLAST of CmaCh15G004330 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 75/135 (55.56%), Postives = 95/135 (70.37%), Query Frame = 1 

Query: 1   MQSPPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQ 60
           M  PP   +  ++PCAACK+LRRRC  EC  +PYF P EP KFA+VH++FGASNV K L 
Sbjct: 33  MSGPP-GTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLM 92

Query: 61  ELPGNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQ 120
           E+P +QRADA +SLVYEAN R+RDPVYGC G+I  LQ QV  LQA+L   ++E+ K + +
Sbjct: 93  EVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQR 152

Query: 121 NANLLALICTETSQV 136
            A +  LI    SQV
Sbjct: 153 EA-VATLIVPSNSQV 165

[Close]
BLAST of CmaCh15G004330 vs. TrEMBL
Match: A0A0B2NUM7_GLYSO (LOB domain-containing protein 1 OS=Glycine soja GN=glysoja_000489 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 112/171 (65.50%), Postives = 126/171 (73.68%), Query Frame = 1 

Query: 4   PPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELP 63
           PP PP VV+SPCAACKILRRRCV++CVLAPYFPPT+PLKF   HR+FGASN+IKFLQELP
Sbjct: 59  PPPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELP 118

Query: 64  GNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNAN 123
            +QRADA SS+VYEANARIRDPVYGC G+I QLQ QVSELQAQLA A+AEV  MQ Q AN
Sbjct: 119 ESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQAN 178

Query: 124 LLALICTETSQVQVEGREVPVLRQDHFPFTDLNSIPHNYKSSNIVWDSSWT 175
           L+ALIC E SQ Q +    P    D   F + NS           W+  WT
Sbjct: 179 LVALICMEMSQSQEQHVLQPQPHVDMSCFIEDNSF-------GTAWEPLWT 222

[Close]
BLAST of CmaCh15G004330 vs. TrEMBL
Match: I1NHD1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G177600 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 112/171 (65.50%), Postives = 126/171 (73.68%), Query Frame = 1 

Query: 4   PPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELP 63
           PP PP VV+SPCAACKILRRRCV++CVLAPYFPPT+PLKF   HR+FGASN+IKFLQELP
Sbjct: 59  PPPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELP 118

Query: 64  GNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNAN 123
            +QRADA SS+VYEANARIRDPVYGC G+I QLQ QVSELQAQLA A+AEV  MQ Q AN
Sbjct: 119 ESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQAN 178

Query: 124 LLALICTETSQVQVEGREVPVLRQDHFPFTDLNSIPHNYKSSNIVWDSSWT 175
           L+ALIC E SQ Q +    P    D   F + NS           W+  WT
Sbjct: 179 LVALICMEMSQSQEQHVLQPQPHVDMSCFIEDNSF-------GTAWEPLWT 222

[Close]
BLAST of CmaCh15G004330 vs. TrEMBL
Match: A0A0A0KU20_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G496470 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 114/160 (71.25%), Postives = 126/160 (78.75%), Query Frame = 1 

Query: 3   SPPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQEL 62
           S P P  VVLSPCAACKILRRRCVD+C+LAPYFPPT+P KFAAVHRI+GA NVIKFLQEL
Sbjct: 4   SSPPPCTVVLSPCAACKILRRRCVDKCILAPYFPPTDPFKFAAVHRIYGAGNVIKFLQEL 63

Query: 63  PGNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKM-QAQN 122
           P  QRADA SSLVYEANARIRDP+YGCTGSIFQLQN+V EL AQLA+AKAEVHKM Q Q+
Sbjct: 64  PEGQRADAASSLVYEANARIRDPIYGCTGSIFQLQNKVRELHAQLAVAKAEVHKMQQLQH 123

Query: 123 ANLLALICTETSQVQVEGREVPVLRQDHFPFTDLNS-IPH 161
            NLLAL     SQ Q +       +  +FPF D  S +PH
Sbjct: 124 PNLLAL---PRSQFQEQQNYCIFTQLQNFPFPDFTSHLPH 160

[Close]
BLAST of CmaCh15G004330 vs. TrEMBL
Match: W9RZL7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014124 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.1e-52
Identity = 111/171 (64.91%), Postives = 127/171 (74.27%), Query Frame = 1 

Query: 4   PPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELP 63
           PP PP VVLSPCAACKILRRRCVD+CVLAPYFPPTEPLKF   HR+FGASN+IKFLQE+P
Sbjct: 68  PPPPPPVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQEIP 127

Query: 64  GNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNAN 123
            +QRADA SS+VYEANARIRDPVYGC G+I QLQ QVSELQAQLA A+AE+  MQ Q AN
Sbjct: 128 ESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQAN 187

Query: 124 LLALICTETSQVQVEGREVPVLRQDHFPFTDLNSIPHNYKSSNIVWDSSWT 175
           L+ALIC + +Q+Q E         D   F D N++          W+  WT
Sbjct: 188 LIALICMDMTQLQ-EPNSQQQPYGDTSCFLDDNTL-------GTTWEPLWT 230

[Close]
BLAST of CmaCh15G004330 vs. TrEMBL
Match: I1LD38_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G213500 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.1e-52
Identity = 112/171 (65.50%), Postives = 126/171 (73.68%), Query Frame = 1 

Query: 4   PPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELP 63
           PPLPP+VV SPCAACKILRRRCV++CVLAPYFPPT+PLKF   HR+FGASN+IKFLQELP
Sbjct: 60  PPLPPVVV-SPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELP 119

Query: 64  GNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNAN 123
            +QR DA SS+VYEANARIRDPVYGC G+I QLQ QVSELQAQLA A+AEV  MQ Q AN
Sbjct: 120 ESQREDAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQAN 179

Query: 124 LLALICTETSQVQVEGREVPVLRQDHFPFTDLNSIPHNYKSSNIVWDSSWT 175
           L+ALIC E SQ Q +    P    D   F + NS           W+  WT
Sbjct: 180 LVALICMEMSQSQEQHVLQPQTHVDMSCFIEDNSF-------GTAWEPLWT 222

[Close]
BLAST of CmaCh15G004330 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 192.6 bits (488), Expect = 2.1e-49
Identity = 104/175 (59.43%), Postives = 120/175 (68.57%), Query Frame = 1 

Query: 4   PPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELP 63
           P L P VVLSPCAACKILRRRC + CVLAPYFPPT+P KF   HR+FGASN+IKFLQELP
Sbjct: 23  PSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELP 82

Query: 64  GNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNAN 123
            +QR DA +S+VYEA ARIRDPVYGC G+I+ LQ QVSELQAQLA A+ E+  MQ Q +N
Sbjct: 83  ESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSN 142

Query: 124 LLALICTETSQVQVEGREVPVLRQDHFPF--TDLNSI--PHNYKSSNIVWDSSWT 175
           LL LI     Q + E        QD+  F   DL  +    N  SS + WD  WT
Sbjct: 143 LLELIYNMDQQQKQE--------QDNMSFESNDLGFLEDKSNTNSSMLWWDPLWT 189

[Close]
BLAST of CmaCh15G004330 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 185.3 bits (469), Expect = 3.4e-47
Identity = 104/190 (54.74%), Postives = 124/190 (65.26%), Query Frame = 1 

Query: 2   QSPPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQE 61
           Q PP PP VVLSPCAACKILRRRC D+CVLAPYFPPT+P KF   HR+FGASN+IKFLQE
Sbjct: 44  QQPPQPP-VVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQE 103

Query: 62  LPGNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQN 121
           LP +QR DA +S+VYEA AR+RDPVYGC G+I+ LQ QVSELQAQLA  + E+  MQ Q 
Sbjct: 104 LPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 163

Query: 122 ANLLALICTETS---QVQVEGREVPVLRQ-----DHF---PFTDLNSI------PHNYKS 175
           ++LL LI         VQ +G++           D F   P  + N +       +N  S
Sbjct: 164 SSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFISSPDEESNDLGFLEDNNNNNNS 223

[Close]
BLAST of CmaCh15G004330 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 162.2 bits (409), Expect = 3.0e-40
Identity = 75/109 (68.81%), Postives = 92/109 (84.40%), Query Frame = 1 

Query: 13  SPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELPGNQRADATS 72
           SPCA+CK+LRRRC  +C+ APYFPP +P KFA VH++FGASNV K LQELP +QRADA +
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 73  SLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQN 122
           SLV+EANAR+RDPVYGC G+I  LQNQVS+LQ QLA+A+AE+  +Q QN
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQN 115

[Close]
BLAST of CmaCh15G004330 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-38
Identity = 77/112 (68.75%), Postives = 88/112 (78.57%), Query Frame = 1 

Query: 13  SPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELPGNQRADATS 72
           SPCAACK+LRRRC  +CV +PYFP  EP KFA VHR+FGASNV K LQELP +QR DA S
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 73  SLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAE-VHKMQAQNAN 124
           S+VYEANAR+RDPVYGC G+I  LQ Q+  LQAQLALA+AE VH    Q+ N
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTN 123

[Close]
BLAST of CmaCh15G004330 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 147.5 bits (371), Expect = 7.7e-36
Identity = 75/135 (55.56%), Postives = 95/135 (70.37%), Query Frame = 1 

Query: 1   MQSPPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQ 60
           M  PP   +  ++PCAACK+LRRRC  EC  +PYF P EP KFA+VH++FGASNV K L 
Sbjct: 33  MSGPP-GTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLM 92

Query: 61  ELPGNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQ 120
           E+P +QRADA +SLVYEAN R+RDPVYGC G+I  LQ QV  LQA+L   ++E+ K + +
Sbjct: 93  EVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQR 152

Query: 121 NANLLALICTETSQV 136
            A +  LI    SQV
Sbjct: 153 EA-VATLIVPSNSQV 165

[Close]
BLAST of CmaCh15G004330 vs. NCBI nr
Match: gi|720090050|ref|XP_010244970.1| (PREDICTED: LOB domain-containing protein 1-like [Nelumbo nucifera])

HSP 1 Score: 223.4 bits (568), Expect = 3.1e-55
Identity = 116/181 (64.09%), Postives = 138/181 (76.24%), Query Frame = 1 

Query: 4   PPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELP 63
           PPLPP VV+SPCAACKILRRRCV++CVLAPYFPPTEPLKF   HR+FGASN+IKFLQELP
Sbjct: 31  PPLPPPVVISPCAACKILRRRCVEKCVLAPYFPPTEPLKFTTAHRVFGASNIIKFLQELP 90

Query: 64  GNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNAN 123
            +QRADA SS+VYEANARIRDPVYGC G+I QLQ QV+ELQAQLA A+AE+  MQ Q AN
Sbjct: 91  ESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAELVNMQCQQAN 150

Query: 124 LLALICTETSQVQVEGREVPVLRQDHFPFTDLNSIPHNYKSSNIV----------WDSSW 175
           LLALIC E +Q Q    + P+L+Q  F    + S PH++++SN +          W+  W
Sbjct: 151 LLALICMEMAQSQ----QAPLLQQQPFDNFMITS-PHSFQTSNGIFTDDTSLGSTWEPLW 206

[Close]
BLAST of CmaCh15G004330 vs. NCBI nr
Match: gi|697169485|ref|XP_009593636.1| (PREDICTED: LOB domain-containing protein 1-like [Nicotiana tomentosiformis])

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-52
Identity = 110/182 (60.44%), Postives = 135/182 (74.18%), Query Frame = 1 

Query: 3   SPPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQEL 62
           SPP PPMVV+SPCAACKILRRRC ++CVLAPYFPP +P+KF   HR+FGASN+IKFLQEL
Sbjct: 34  SPPPPPMVVVSPCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQEL 93

Query: 63  PGNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNA 122
           P +QRADA SS+VYEANAR+RDPVYGC G+I QLQ QV+ELQAQLA A+AEV  MQ Q A
Sbjct: 94  PESQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQA 153

Query: 123 NLLALICTETSQVQVEGREVPVLRQDHFPFTDLNSIPHNYKSS----------NIVWDSS 175
           NL+ALIC + +Q   +    P  + +   FT  N+IPH++++S            VW+  
Sbjct: 154 NLMALICMDMNQSSPQAS--PQQQSNLESFT--NNIPHSFQNSMSFLDDNNNFGSVWEPM 211

[Close]
BLAST of CmaCh15G004330 vs. NCBI nr
Match: gi|672110415|ref|XP_008795252.1| (PREDICTED: LOB domain-containing protein 1 [Phoenix dactylifera])

HSP 1 Score: 214.2 bits (544), Expect = 1.9e-52
Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = 1 

Query: 3   SPPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQEL 62
           SPP PP VVLSPCAACKILRRRCVD+CVLAPYFPPTEPLKF   HR+FGASN+IK LQ+L
Sbjct: 24  SPPTPPPVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFTTAHRVFGASNIIKLLQDL 83

Query: 63  PGNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNA 122
           P +QRADA SS+VYEANARIRDPVYGC G+I QLQ QV ELQAQLA A+AE+  MQAQNA
Sbjct: 84  PESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVGELQAQLARAQAELVNMQAQNA 143

Query: 123 NLLALICTETSQVQ 137
           NL+ALIC E +Q Q
Sbjct: 144 NLIALICMEMAQSQ 157

[Close]
BLAST of CmaCh15G004330 vs. NCBI nr
Match: gi|356576187|ref|XP_003556215.1| (PREDICTED: LOB domain-containing protein 1-like [Glycine max])

HSP 1 Score: 214.2 bits (544), Expect = 1.9e-52
Identity = 112/171 (65.50%), Postives = 126/171 (73.68%), Query Frame = 1 

Query: 4   PPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELP 63
           PP PP VV+SPCAACKILRRRCV++CVLAPYFPPT+PLKF   HR+FGASN+IKFLQELP
Sbjct: 59  PPPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELP 118

Query: 64  GNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNAN 123
            +QRADA SS+VYEANARIRDPVYGC G+I QLQ QVSELQAQLA A+AEV  MQ Q AN
Sbjct: 119 ESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQAN 178

Query: 124 LLALICTETSQVQVEGREVPVLRQDHFPFTDLNSIPHNYKSSNIVWDSSWT 175
           L+ALIC E SQ Q +    P    D   F + NS           W+  WT
Sbjct: 179 LVALICMEMSQSQEQHVLQPQPHVDMSCFIEDNSF-------GTAWEPLWT 222

[Close]
BLAST of CmaCh15G004330 vs. NCBI nr
Match: gi|700196054|gb|KGN51231.1| (hypothetical protein Csa_5G496470 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 2.5e-52
Identity = 114/160 (71.25%), Postives = 126/160 (78.75%), Query Frame = 1 

Query: 3   SPPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQEL 62
           S P P  VVLSPCAACKILRRRCVD+C+LAPYFPPT+P KFAAVHRI+GA NVIKFLQEL
Sbjct: 4   SSPPPCTVVLSPCAACKILRRRCVDKCILAPYFPPTDPFKFAAVHRIYGAGNVIKFLQEL 63

Query: 63  PGNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKM-QAQN 122
           P  QRADA SSLVYEANARIRDP+YGCTGSIFQLQN+V EL AQLA+AKAEVHKM Q Q+
Sbjct: 64  PEGQRADAASSLVYEANARIRDPIYGCTGSIFQLQNKVRELHAQLAVAKAEVHKMQQLQH 123

Query: 123 ANLLALICTETSQVQVEGREVPVLRQDHFPFTDLNS-IPH 161
            NLLAL     SQ Q +       +  +FPF D  S +PH
Sbjct: 124 PNLLAL---PRSQFQEQQNYCIFTQLQNFPFPDFTSHLPH 160

The following BLAST results are available for this feature:
BLAST of CmaCh15G004330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD1_ARATH3.7e-4859.43LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1[more]
LBD11_ARATH5.9e-4654.74LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2[more]
LBD12_ARATH5.4e-3968.81LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2[more]
LBD4_ARATH2.3e-3768.75LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1[more]
LBD15_ARATH1.4e-3455.56LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2[more]
BLAST of CmaCh15G004330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B2NUM7_GLYSO1.3e-5265.50LOB domain-containing protein 1 OS=Glycine soja GN=glysoja_000489 PE=4 SV=1[more]
I1NHD1_SOYBN1.3e-5265.50Uncharacterized protein OS=Glycine max GN=GLYMA_20G177600 PE=4 SV=1[more]
A0A0A0KU20_CUCSA1.7e-5271.25Uncharacterized protein OS=Cucumis sativus GN=Csa_5G496470 PE=4 SV=1[more]
W9RZL7_9ROSA5.1e-5264.91Uncharacterized protein OS=Morus notabilis GN=L484_014124 PE=4 SV=1[more]
I1LD38_SOYBN5.1e-5265.50Uncharacterized protein OS=Glycine max GN=GLYMA_10G213500 PE=4 SV=1[more]
BLAST of CmaCh15G004330 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07900.12.1e-4959.43 LOB domain-containing protein 1[more]
AT2G28500.13.4e-4754.74 LOB domain-containing protein 11[more]
AT2G30130.13.0e-4068.81 Lateral organ boundaries (LOB) domain family protein[more]
AT1G31320.11.3e-3868.75 LOB domain-containing protein 4[more]
AT2G40470.17.7e-3655.56 LOB domain-containing protein 15[more]
BLAST of CmaCh15G004330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|720090050|ref|XP_010244970.1|3.1e-5564.09PREDICTED: LOB domain-containing protein 1-like [Nelumbo nucifera][more]
gi|697169485|ref|XP_009593636.1|1.1e-5260.44PREDICTED: LOB domain-containing protein 1-like [Nicotiana tomentosiformis][more]
gi|672110415|ref|XP_008795252.1|1.9e-5278.36PREDICTED: LOB domain-containing protein 1 [Phoenix dactylifera][more]
gi|356576187|ref|XP_003556215.1|1.9e-5265.50PREDICTED: LOB domain-containing protein 1-like [Glycine max][more]
gi|700196054|gb|KGN51231.1|2.5e-5271.25hypothetical protein Csa_5G496470 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G004330.1CmaCh15G004330.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 14..111
score: 5.6
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 13..114
score: 26
NoneNo IPR availableunknownCoilCoilcoord: 93..127
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 2..174
score: 7.1
NoneNo IPR availablePANTHERPTHR31301:SF6SUBFAMILY NOT NAMEDcoord: 2..174
score: 7.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh15G004330Cucsa.275710Cucumber (Gy14) v1cgycmaB0769
CmaCh15G004330Cla004725Watermelon (97103) v1cmawmB252
CmaCh15G004330Csa5G496470Cucumber (Chinese Long) v2cmacuB300
CmaCh15G004330MELO3C025504Melon (DHL92) v3.5.1cmameB251
CmaCh15G004330CSPI05G16950Wild cucumber (PI 183967)cmacpiB305
CmaCh15G004330CmoCh04G013150Cucurbita moschata (Rifu)cmacmoB306
CmaCh15G004330CmoCh04G002770Cucurbita moschata (Rifu)cmacmoB307
CmaCh15G004330CmoCh15G004440Cucurbita moschata (Rifu)cmacmoB287
CmaCh15G004330Lsi04G008120Bottle gourd (USVL1VR-Ls)cmalsiB284
CmaCh15G004330Lsi02G016970Bottle gourd (USVL1VR-Ls)cmalsiB272
CmaCh15G004330Cp4.1LG01g10320Cucurbita pepo (Zucchini)cmacpeB314
CmaCh15G004330Cp4.1LG13g09830Cucurbita pepo (Zucchini)cmacpeB305
CmaCh15G004330Cp4.1LG01g04270Cucurbita pepo (Zucchini)cmacpeB315
CmaCh15G004330MELO3C011730.2Melon (DHL92) v3.6.1cmamedB302
CmaCh15G004330CsaV3_5G025960Cucumber (Chinese Long) v3cmacucB0354
CmaCh15G004330CsaV3_5G006250Cucumber (Chinese Long) v3cmacucB0360
CmaCh15G004330Cla97C09G181850Watermelon (97103) v2cmawmbB322
CmaCh15G004330Carg02388Silver-seed gourdcarcmaB0362
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh15G004330CmaCh04G002720Cucurbita maxima (Rimu)cmacmaB319
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh15G004330Cucurbita maxima (Rimu)cmacmaB324
CmaCh15G004330Cucurbita moschata (Rifu)cmacmoB308
CmaCh15G004330Watermelon (Charleston Gray)cmawcgB244
CmaCh15G004330Cucurbita pepo (Zucchini)cmacpeB317
CmaCh15G004330Bottle gourd (USVL1VR-Ls)cmalsiB271
CmaCh15G004330Bottle gourd (USVL1VR-Ls)cmalsiB278
CmaCh15G004330Cucumber (Gy14) v2cgybcmaB328
CmaCh15G004330Cucumber (Gy14) v2cgybcmaB492
CmaCh15G004330Cucumber (Gy14) v2cgybcmaB610
CmaCh15G004330Melon (DHL92) v3.6.1cmamedB285
CmaCh15G004330Silver-seed gourdcarcmaB0961
CmaCh15G004330Watermelon (97103) v2cmawmbB294
CmaCh15G004330Wax gourdcmawgoB0383