Carg02388 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02388
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	LOB domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_007 : 1488956 .. 1489815 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCTCCGCCGCCGCCGCCGCCGCTGATGGTGGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAAGTGTGTTTTAGCGCCTTATTTTCCTCCGACTGAGCCACTCAAGTTCGCCGCCGTGCATAGAATATTTGGAGCCGGCAACGTAATCAAGTTTCTGCAGGTAAATGTCAAACCCAATTAAACCATTTGTGCAATATTTATCTTAATTTTAAGAATTATTAAGAAAAATGTTTTTATTTACGTGCACGATAAAATACATAAAATTAATCAAATTTTAGTAAGAAACACTTTAGAGATTATTAATTAATTAAGTTTAACAAAATTATTATTTTTGTTAAAATTAGTAAAGTTTTAGAGATATATCATTATTTTTAGTCGGTACAAAATTAAGGTAAATATTAATATGTCTGGTTAAATTTATAAGGGTAATTTTTTTTTTCTTACCGATTTGTATGGTTACGGGAGAAATGTAATATAATGCAGGAACTTCCAGAGAACCAGAGAGCGGATGCTACAAGCAGTTTAGTATATGAAGCCAACGCTAGGATTCGAGACCCCGTCTATGGTTGCACTGGTTCAATTTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGCGCAACTAGCCGTGGCTAAGGCTGAGGTTCACAAGATGCAAGCTCAACATGCAAATTTGTTAGCTCTAATGTGCACGGAAACAAGTCAAGTTCGAGTTGAAGGTCAACAAGTCCCGGTCTTGCGCCAAGACCACTTTCCATTTACTGATTTAAACCCTATTCCACATAATTACAAATCTTCCAATATTTGTTGGGACTCCTCATGGACTTCATCATAG

mRNA sequence

ATGCAGTCTCCGCCGCCGCCGCCGCCGCTGATGGTGGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAAGTGTGTTTTAGCGCCTTATTTTCCTCCGACTGAGCCACTCAAGTTCGCCGCCGTGCATAGAATATTTGGAGCCGGCAACGTAATCAAGTTTCTGCAGGAACTTCCAGAGAACCAGAGAGCGGATGCTACAAGCAGTTTAGTATATGAAGCCAACGCTAGGATTCGAGACCCCGTCTATGGTTGCACTGGTTCAATTTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGCGCAACTAGCCGTGGCTAAGGCTGAGGTTCACAAGATGCAAGCTCAACATGCAAATTTGTTAGCTCTAATGTGCACGGAAACAAGTCAAGTTCGAGTTGAAGGTCAACAAGTCCCGGTCTTGCGCCAAGACCACTTTCCATTTACTGATTTAAACCCTATTCCACATAATTACAAATCTTCCAATATTTGTTGGGACTCCTCATGGACTTCATCATAG

Coding sequence (CDS)

ATGCAGTCTCCGCCGCCGCCGCCGCCGCTGATGGTGGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAAGTGTGTTTTAGCGCCTTATTTTCCTCCGACTGAGCCACTCAAGTTCGCCGCCGTGCATAGAATATTTGGAGCCGGCAACGTAATCAAGTTTCTGCAGGAACTTCCAGAGAACCAGAGAGCGGATGCTACAAGCAGTTTAGTATATGAAGCCAACGCTAGGATTCGAGACCCCGTCTATGGTTGCACTGGTTCAATTTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGCGCAACTAGCCGTGGCTAAGGCTGAGGTTCACAAGATGCAAGCTCAACATGCAAATTTGTTAGCTCTAATGTGCACGGAAACAAGTCAAGTTCGAGTTGAAGGTCAACAAGTCCCGGTCTTGCGCCAAGACCACTTTCCATTTACTGATTTAAACCCTATTCCACATAATTACAAATCTTCCAATATTTGTTGGGACTCCTCATGGACTTCATCATAG

Protein sequence

MQSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQVRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS

Homology

[Close]

BLAST of Carg02388 vs. NCBI nr
Match: XP_022939142.1 (LOB domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 321.6 bits (823), Expect = 1.7e-84
Identity = 158/161 (98.14%), Postives = 158/161 (98.14%), Query Frame = 0


Query: 18  AACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSLV 77
           AACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSLV
Sbjct: 19  AACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSLV 78

Query: 78  YEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQV 137
           YEANARIRDPVYGCTGSIFQLQNQVSELQ QLAVAKAEVHKM AQHANLLALMCTETSQV
Sbjct: 79  YEANARIRDPVYGCTGSIFQLQNQVSELQVQLAVAKAEVHKMLAQHANLLALMCTETSQV 138

Query: 138 RVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS 179
           RVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNI WDSSWTSS
Sbjct: 139 RVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNIFWDSSWTSS 179

[Close]

BLAST of Carg02388 vs. NCBI nr
Match: XP_023551518.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.2 bits (814), Expect = 1.8e-83
Identity = 155/162 (95.68%), Postives = 159/162 (98.15%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL
Sbjct: 7   CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 66

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQ 136
           VYEANARIRDP+YGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQ
Sbjct: 67  VYEANARIRDPIYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQ 126

Query: 137 VRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS 179
           VRVEG++VPVL QDHFPF+DLNPIPH YKSSNI WDSSWTSS
Sbjct: 127 VRVEGREVPVLCQDHFPFSDLNPIPHYYKSSNISWDSSWTSS 168

[Close]

BLAST of Carg02388 vs. NCBI nr
Match: XP_022993359.1 (LOB domain-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 309.7 bits (792), Expect = 6.5e-81
Identity = 151/162 (93.21%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRCVD+CVLAPYFPPTEPLKFAAVHRIFGA NVIKFLQELP NQRADATSSL
Sbjct: 7   CAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELPGNQRADATSSL 66

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQ 136
           VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLA+AKAEVHKMQAQ+ANLLAL+CTETSQ
Sbjct: 67  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNANLLALICTETSQ 126

Query: 137 VRVEGQQVPVLRQDHFPFTDLNPIPHNYKSSNICWDSSWTSS 179
           V+VEG++VPVLRQDHFPFTDLN IPHNYKSSNI WDSSWTSS
Sbjct: 127 VQVEGREVPVLRQDHFPFTDLNSIPHNYKSSNIVWDSSWTSS 168

[Close]

BLAST of Carg02388 vs. NCBI nr
Match: KGN51231.1 (hypothetical protein Csa_5G496470 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 7.0e-51
Identity = 109/148 (73.65%), Postives = 120/148 (81.08%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRCVDKC+LAPYFPPT+P KFAAVHRI+GAGNVIKFLQELPE QRADA SSL
Sbjct: 16  CAACKILRRRCVDKCILAPYFPPTDPFKFAAVHRIYGAGNVIKFLQELPEGQRADAASSL 75

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKM-QAQHANLLALMCTETS 136
           VYEANARIRDP+YGCTGSIFQLQN+V EL AQLAVAKAEVHKM Q QH NLLAL     S
Sbjct: 76  VYEANARIRDPIYGCTGSIFQLQNKVRELHAQLAVAKAEVHKMQQLQHPNLLAL---PRS 135

Query: 137 QVRVEGQQVPVLRQDHFPFTDL-NPIPH 163
           Q + +       +  +FPF D  + +PH
Sbjct: 136 QFQEQQNYCIFTQLQNFPFPDFTSHLPH 160

[Close]

BLAST of Carg02388 vs. NCBI nr
Match: XP_020274553.1 (LOB domain-containing protein 1 [Asparagus officinalis] >ONK62432.1 uncharacterized protein A4U43_C07F3800 [Asparagus officinalis])

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 96/128 (75.00%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRCVDKCVLAPYFPPTEPLKF   HR+FGA N+IKFLQELPENQRADA SS+
Sbjct: 40  CAACKILRRRCVDKCVLAPYFPPTEPLKFTTAHRVFGASNIIKFLQELPENQRADAVSSM 99

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQ 136
           VYEANARIRDPVYGC G+I QLQ QV+ELQA LA A+AE+  MQ QHANL+AL+C E + 
Sbjct: 100 VYEANARIRDPVYGCAGAICQLQKQVNELQADLARAQAELINMQTQHANLVALICMEMAN 159

Query: 137 VRVEGQQV 145
            +   QQ+
Sbjct: 160 SQQNHQQL 167

[Close]

BLAST of Carg02388 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 154.5 bits (389), Expect = 6.3e-38
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CA+CK+LRRRC   C+ APYFPP +P KFA VH++FGA NV K LQELP +QRADA +SL
Sbjct: 9   CASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSL 68

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQH 124
           V+EANAR+RDPVYGC G+I  LQNQVS+LQ QLAVA+AE+  +Q Q+
Sbjct: 69  VFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQN 115

[Close]

BLAST of Carg02388 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 147.9 bits (372), Expect = 5.9e-36
Identity = 70/108 (64.81%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACK+LRRRC   CV +PYFP  EP KFA VHR+FGA NV K LQELP +QR DA SS+
Sbjct: 14  CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHA 125
           VYEANAR+RDPVYGC G+I  LQ Q+  LQAQLA+A+AEV  ++ + +
Sbjct: 74  VYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of Carg02388 vs. TAIR10
Match: AT2G28500.1 (LOB domain-containing protein 11)

HSP 1 Score: 147.5 bits (371), Expect = 7.7e-36
Identity = 74/130 (56.92%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRC DKCVLAPYFPPT+P KF   HR+FGA N+IKFLQELPE+QR DA +S+
Sbjct: 56  CAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSM 115

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLAL---MCTE 136
           VYEA AR+RDPVYGC G+I+ LQ QV                   Q ++LL L   M   
Sbjct: 116 VYEAGARMRDPVYGCAGAIYHLQRQVXXXXXXXXXXXXXXXXXXLQRSSLLELIYNMEQT 175

Query: 137 TSQVRVEGQQ 144
              V+ +GQQ
Sbjct: 176 KLSVQEQGQQ 185

[Close]

BLAST of Carg02388 vs. TAIR10
Match: AT1G07900.1 (LOB domain-containing protein 1)

HSP 1 Score: 144.4 bits (363), Expect = 6.6e-35
Identity = 79/164 (48.17%), Postives = 94/164 (57.32%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRC ++CVLAPYFPPT+P KF   HR+FGA N+IKFLQELPE+QR DA +S+
Sbjct: 34  CAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSM 93

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQ 136
           VYEA ARIRDPVYGC G+I+ LQ                          LL L+     Q
Sbjct: 94  VYEAEARIRDPVYGCAGAIYHLQRXXXXXXXXXXXXXXXXXXXXXXXXXLLELIYNMDQQ 153

Query: 137 VRVEGQQVPVLRQDHFPF--TDLNPI--PHNYKSSNICWDSSWT 177
            + E        QD+  F   DL  +    N  SS + WD  WT
Sbjct: 154 QKQE--------QDNMSFESNDLGFLEDKSNTNSSMLWWDPLWT 189

[Close]

BLAST of Carg02388 vs. TAIR10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9)

HSP 1 Score: 139.4 bits (350), Expect = 2.1e-33
Identity = 68/108 (62.96%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 17  CAACKILRRRCV-DKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSS 76
           CA CK+LRR+CV D CV APYFP  EP KFA VH+IFGA NV K LQEL EN R+DA  S
Sbjct: 15  CAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDS 74

Query: 77  LVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQH 124
           +VYEANARI+DPVYGC G+I  L  Q+  LQ QLA A+AE+  ++  H
Sbjct: 75  MVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLH 122

[Close]

BLAST of Carg02388 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CA+CK+LRRRC   C+ APYFPP +P KFA VH++FGA NV K LQELP +QRADA +SL
Sbjct: 9   CASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSL 68

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQH 124
           V+EANAR+RDPVYGC G+I  LQNQVS+LQ QLAVA+AE+  +Q Q+
Sbjct: 69  VFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQN 115

[Close]

BLAST of Carg02388 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-34
Identity = 70/108 (64.81%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACK+LRRRC   CV +PYFP  EP KFA VHR+FGA NV K LQELP +QR DA SS+
Sbjct: 14  CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHA 125
           VYEANAR+RDPVYGC G+I  LQ Q+  LQAQLA+A+AEV  ++ + +
Sbjct: 74  VYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of Carg02388 vs. Swiss-Prot
Match: sp|Q9SK08|LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 74/130 (56.92%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRC DKCVLAPYFPPT+P KF   HR+FGA N+IKFLQELPE+QR DA +S+
Sbjct: 56  CAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSM 115

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLAL---MCTE 136
           VYEA AR+RDPVYGC G+I+ LQ QV                   Q ++LL L   M   
Sbjct: 116 VYEAGARMRDPVYGCAGAIYHLQRQVXXXXXXXXXXXXXXXXXXLQRSSLLELIYNMEQT 175

Query: 137 TSQVRVEGQQ 144
              V+ +GQQ
Sbjct: 176 KLSVQEQGQQ 185

[Close]

BLAST of Carg02388 vs. Swiss-Prot
Match: sp|Q9LQR0|LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-33
Identity = 79/164 (48.17%), Postives = 94/164 (57.32%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRC ++CVLAPYFPPT+P KF   HR+FGA N+IKFLQELPE+QR DA +S+
Sbjct: 34  CAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSM 93

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQ 136
           VYEA ARIRDPVYGC G+I+ LQ                          LL L+     Q
Sbjct: 94  VYEAEARIRDPVYGCAGAIYHLQRXXXXXXXXXXXXXXXXXXXXXXXXXLLELIYNMDQQ 153

Query: 137 VRVEGQQVPVLRQDHFPF--TDLNPI--PHNYKSSNICWDSSWT 177
            + E        QD+  F   DL  +    N  SS + WD  WT
Sbjct: 154 QKQE--------QDNMSFESNDLGFLEDKSNTNSSMLWWDPLWT 189

[Close]

BLAST of Carg02388 vs. Swiss-Prot
Match: sp|Q9SA51|LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-32
Identity = 68/108 (62.96%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 17  CAACKILRRRCV-DKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSS 76
           CA CK+LRR+CV D CV APYFP  EP KFA VH+IFGA NV K LQEL EN R+DA  S
Sbjct: 15  CAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDS 74

Query: 77  LVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQH 124
           +VYEANARI+DPVYGC G+I  L  Q+  LQ QLA A+AE+  ++  H
Sbjct: 75  MVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLH 122

[Close]

BLAST of Carg02388 vs. TrEMBL
Match: tr|A0A0A0KU20|A0A0A0KU20_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G496470 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 4.6e-51
Identity = 109/148 (73.65%), Postives = 120/148 (81.08%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRCVDKC+LAPYFPPT+P KFAAVHRI+GAGNVIKFLQELPE QRADA SSL
Sbjct: 16  CAACKILRRRCVDKCILAPYFPPTDPFKFAAVHRIYGAGNVIKFLQELPEGQRADAASSL 75

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKM-QAQHANLLALMCTETS 136
           VYEANARIRDP+YGCTGSIFQLQN+V EL AQLAVAKAEVHKM Q QH NLLAL     S
Sbjct: 76  VYEANARIRDPIYGCTGSIFQLQNKVRELHAQLAVAKAEVHKMQQLQHPNLLAL---PRS 135

Query: 137 QVRVEGQQVPVLRQDHFPFTDL-NPIPH 163
           Q + +       +  +FPF D  + +PH
Sbjct: 136 QFQEQQNYCIFTQLQNFPFPDFTSHLPH 160

[Close]

BLAST of Carg02388 vs. TrEMBL
Match: tr|V7C015|V7C015_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G137300g PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.7e-46
Identity = 94/127 (74.02%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRC DKCVLAPYFPPTEP KF   HR+FGA N+IKFLQELPE+QRADA +S+
Sbjct: 35  CAACKILRRRCADKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVASM 94

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQ 136
           VYEA ARIRDPVYGC G+I QLQ QV+ELQAQLA A+AEV  MQ Q ANL+AL+C E SQ
Sbjct: 95  VYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVTMQLQQANLVALICMEMSQ 154

Query: 137 VRVEGQQ 144
              E  Q
Sbjct: 155 TPQESPQ 161

[Close]

BLAST of Carg02388 vs. TrEMBL
Match: tr|A0A0K9RV84|A0A0K9RV84_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_024640 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.0e-45
Identity = 89/120 (74.17%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRC DKCVLAPYFPPT+PLKF+  H++FGA N+IK LQELPE+QRADA SS+
Sbjct: 49  CAACKILRRRCADKCVLAPYFPPTDPLKFSIAHKVFGASNIIKLLQELPESQRADAVSSM 108

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQ 136
           VYEANAR+RDPVYGC G+I QLQ QVSELQA+LA ++AEV  MQ Q ANLLA++C E +Q
Sbjct: 109 VYEANARLRDPVYGCAGAICQLQKQVSELQAELAKSRAEVVNMQCQQANLLAIICMEMTQ 168

[Close]

BLAST of Carg02388 vs. TrEMBL
Match: tr|A0A2G3CG96|A0A2G3CG96_CAPCH (LOB domain-containing protein 11 OS=Capsicum chinense OX=80379 GN=BC332_13436 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.5e-44
Identity = 94/161 (58.39%), Postives = 114/161 (70.81%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRCV+KCVLAPYFPPTEPLKF   HR+FGA N+IK LQELPE QRADA +S+
Sbjct: 44  CAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSM 103

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQ 136
           VYEANARIRDPVYGC G+I QLQ Q+SELQA+ A A AE+  ++ Q++NLLAL+C E S+
Sbjct: 104 VYEANARIRDPVYGCAGAICQLQKQISELQAEFAKAHAEIMNLKCQNSNLLALVCMEVSE 163

Query: 137 VRVEGQQVPVLRQDHF-PFTDLNPIPHNYKSSNICWDSSWT 177
                    +L  DH   + +   +     S    W+  WT
Sbjct: 164 ---NSSSSSLLSSDHINDYGNNTSMFLEDNSVYAAWEPLWT 201

[Close]

BLAST of Carg02388 vs. TrEMBL
Match: tr|A0A1U8F9W3|A0A1U8F9W3_CAPAN (LOB domain-containing protein 1-like OS=Capsicum annuum OX=4072 GN=LOC107852523 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.5e-44
Identity = 94/161 (58.39%), Postives = 114/161 (70.81%), Query Frame = 0


Query: 17  CAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSL 76
           CAACKILRRRCV+KCVLAPYFPPTEPLKF   HR+FGA N+IK LQELPE QRADA +S+
Sbjct: 44  CAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSM 103

Query: 77  VYEANARIRDPVYGCTGSIFQLQNQVSELQAQLAVAKAEVHKMQAQHANLLALMCTETSQ 136
           VYEANARIRDPVYGC G+I QLQ Q+SELQA+ A A AE+  ++ Q++NLLAL+C E S+
Sbjct: 104 VYEANARIRDPVYGCAGAICQLQKQISELQAEFAKAHAEIMNLKCQNSNLLALVCMEVSE 163

Query: 137 VRVEGQQVPVLRQDHF-PFTDLNPIPHNYKSSNICWDSSWT 177
                    +L  DH   + +   +     S    W+  WT
Sbjct: 164 ---NSSSSSLLSSDHINDYGNNTSMFLEDNSVYAAWEPLWT 201

The following BLAST results are available for this feature:

BLAST of Carg02388 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939142.1	1.7e-84	98.14	LOB domain-containing protein 1-like [Cucurbita moschata]	[more]
XP_023551518.1	1.8e-83	95.68	LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022993359.1	6.5e-81	93.21	LOB domain-containing protein 1-like [Cucurbita maxima]	[more]
KGN51231.1	7.0e-51	73.65	hypothetical protein Csa_5G496470 [Cucumis sativus]	[more]
XP_020274553.1	1.2e-47	75.00	LOB domain-containing protein 1 [Asparagus officinalis] >ONK62432.1 uncharacteri...	[more]

BLAST of Carg02388 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30130.1	6.3e-38	67.29	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	5.9e-36	64.81	LOB domain-containing protein 4	[more]
AT2G28500.1	7.7e-36	56.92	LOB domain-containing protein 11	[more]
AT1G07900.1	6.6e-35	48.17	LOB domain-containing protein 1	[more]
AT1G16530.1	2.1e-33	62.96	ASYMMETRIC LEAVES 2-like 9	[more]

BLAST of Carg02388 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LBW3\|LBD12_ARATH	1.1e-36	67.29	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
sp\|Q9SHE9\|LBD4_ARATH	1.1e-34	64.81	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
sp\|Q9SK08\|LBD11_ARATH	1.4e-34	56.92	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
sp\|Q9LQR0\|LBD1_ARATH	1.2e-33	48.17	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
sp\|Q9SA51\|LBD3_ARATH	3.8e-32	62.96	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]

BLAST of Carg02388 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KU20\|A0A0A0KU20_CUCSA	4.6e-51	73.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G496470 PE=4 SV=1	[more]
tr\|V7C015\|V7C015_PHAVU	7.7e-46	74.02	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G137300g PE=4 ...	[more]
tr\|A0A0K9RV84\|A0A0K9RV84_SPIOL	5.0e-45	74.17	Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_024640 PE=4 SV=1	[more]
tr\|A0A2G3CG96\|A0A2G3CG96_CAPCH	2.5e-44	58.39	LOB domain-containing protein 11 OS=Capsicum chinense OX=80379 GN=BC332_13436 PE...	[more]
tr\|A0A1U8F9W3\|A0A1U8F9W3_CAPAN	2.5e-44	58.39	LOB domain-containing protein 1-like OS=Capsicum annuum OX=4072 GN=LOC107852523 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02388-RA	Carg02388-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 95..122
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 7..150
None	No IPR available	PANTHER	PTHR31301:SF6	LOB DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 7..150
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 16..113 e-value: 9.4E-42 score: 141.5
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 15..116 score: 26.238

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02388	Cla004725	Watermelon (97103) v1	carwmB0246
Carg02388	Csa5G496470	Cucumber (Chinese Long) v2	carcuB0294
Carg02388	MELO3C025504	Melon (DHL92) v3.5.1	carmeB0260
Carg02388	CSPI05G16950	Wild cucumber (PI 183967)	carcpiB0298
Carg02388	Cucsa.275710	Cucumber (Gy14) v1	carcgyB0317
Carg02388	CmaCh15G004330	Cucurbita maxima (Rimu)	carcmaB0362
Carg02388	CmoCh15G004440	Cucurbita moschata (Rifu)	carcmoB0362
Carg02388	Lsi02G016970	Bottle gourd (USVL1VR-Ls)	carlsiB232
Carg02388	Cp4.1LG13g09830	Cucurbita pepo (Zucchini)	carcpeB0366
Carg02388	MELO3C025504.2	Melon (DHL92) v3.6.1	carmedB0270
Carg02388	CsaV3_5G025960	Cucumber (Chinese Long) v3	carcucB0297
Carg02388	Cla97C09G181850	Watermelon (97103) v2	carwmbB0279

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02388	Wax gourd	carwgoB0343
Carg02388	Silver-seed gourd	carcarB184
Carg02388	Silver-seed gourd	carcarB306
Carg02388	Cucumber (Gy14) v2	carcgybB0281
Carg02388	Cucurbita maxima (Rimu)	carcmaB0374
Carg02388	Cucurbita moschata (Rifu)	carcmoB0370
Carg02388	Cucurbita pepo (Zucchini)	carcpeB0374
Carg02388	Cucurbita pepo (Zucchini)	carcpeB0377
Carg02388	Watermelon (Charleston Gray)	carwcgB0249
Carg02388	Watermelon (Charleston Gray)	carwcgB0253
Carg02388	Watermelon (97103) v1	carwmB0250
Carg02388	Watermelon (97103) v2	carwmbB0267