Cla020073 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020073
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALL); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB
Location	Chr2 : 24139145 .. 24140416 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACGTGGCCAAATGTAGTAATTCTCCTCCAACTCCCATCACTGTTCCTAACCCCTTATCTTTCTCTCCAATGTCTTCTTCCTCCACCGCCACCAATTTTGCTTCCCCACCCACTTCTCAGCCCTCCTCTCCTCCTCCGCCTGCCGTCGTCCTCAGCCCCTGCGCCGCCTGTAAAATCCTCCGCCGCCGCTGCGTCGAGAAATGTGTTTTGGCTCCATATTTCCCTCCCACTGAGCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGTGCTAGCAATATCATCAAGTTCTTGCAAGTATGCCCATTATTTATTTATTCTTTCCACTTTTCCACTTTTTCTTATTACAAATTTTCTATTTTACTTTTACATTTTTTTATAATTTATTTATTTATTTATTTTTTTTTATTATGCTCTCTAGTTCGAATCTCAACTAAAAAGTTTCCCAATTATACTATGAGTAATCAATCCTATGTATTAATTTTAGAAGTAATAATGGCCATTAACTTCTTTGGTATTTCTGAATGTAAGAAAAATAAATGAGAGGGGTATAGTTGGATTTAACTTAAAAACAGAAATTAATTGATTTGACTTAACTACGTTTTGACTTTTGATGGGACTTGATTAATTTTTAATCCCGTAATTTATGGAACTTTGGTTTAATTAAATTTTCTTTTAGGTTAAAATGAATAATATTTGTTAGTGAATAAAGTTCTGCTGGCGATTGAGAAAGATCAAAATTTGTTTGAGTTACATGGTTTCGTTTATTTTCTTTTCTATTAAATGGAGAAGTAGCGAACATTTTTATTATTAATTGACATTTTTGTAACTTGTTGACTTTGTTGAATTTTATTGAATTGAAAATTAGAATGGAAGATTTTGTGTTCAAAATTGGTACATATAATGTAATTTTTCTTCTTTAATTAATATTGTTTTAAAATTTTATAGGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGACTACGAGATCCAGTTTATGGTAGTGCGGGTGCGATTTGTCAGCTGCAAAAGCAAGTGAGTGAGTTGCAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCTAACATGCAGCAACAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCAGAACCCGTTTGGCCGCCGCAGCTCATTGACACTGCATGTTTCCTCGACGATGCCACCCTTAGCTCGCCGTGGGAGCCACTTTGGACATGA

mRNA sequence

ATGGCTTACGTGGCCAAATGTAGTAATTCTCCTCCAACTCCCATCACTGTTCCTAACCCCTTATCTTTCTCTCCAATGTCTTCTTCCTCCACCGCCACCAATTTTGCTTCCCCACCCACTTCTCAGCCCTCCTCTCCTCCTCCGCCTGCCGTCGTCCTCAGCCCCTGCGCCGCCTGTAAAATCCTCCGCCGCCGCTGCGTCGAGAAATGTGTTTTGGCTCCATATTTCCCTCCCACTGAGCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGTGCTAGCAATATCATCAAGTTCTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGACTACGAGATCCAGTTTATGGTAGTGCGGGTGCGATTTGTCAGCTGCAAAAGCAAGTGAGTGAGTTGCAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCTAACATGCAGCAACAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCAGAACCCGTTTGGCCGCCGCAGCTCATTGACACTGCATGTTTCCTCGACGATGCCACCCTTAGCTCGCCGTGGGAGCCACTTTGGACATGA

Coding sequence (CDS)

ATGGCTTACGTGGCCAAATGTAGTAATTCTCCTCCAACTCCCATCACTGTTCCTAACCCCTTATCTTTCTCTCCAATGTCTTCTTCCTCCACCGCCACCAATTTTGCTTCCCCACCCACTTCTCAGCCCTCCTCTCCTCCTCCGCCTGCCGTCGTCCTCAGCCCCTGCGCCGCCTGTAAAATCCTCCGCCGCCGCTGCGTCGAGAAATGTGTTTTGGCTCCATATTTCCCTCCCACTGAGCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGTGCTAGCAATATCATCAAGTTCTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGACTACGAGATCCAGTTTATGGTAGTGCGGGTGCGATTTGTCAGCTGCAAAAGCAAGTGAGTGAGTTGCAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCTAACATGCAGCAACAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCAGAACCCGTTTGGCCGCCGCAGCTCATTGACACTGCATGTTTCCTCGACGATGCCACCCTTAGCTCGCCGTGGGAGCCACTTTGGACATGA

Protein sequence

MAYVAKCSNSPPTPITVPNPLSFSPMSSSSTATNFASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLIDTACFLDDATLSSPWEPLWT

Homology

[Close]

BLAST of Cla020073 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.6e-58
Identity = 123/189 (65.08%), Postives = 140/189 (74.07%), Query Frame = 1


Query: 26  MSSSSTATNFASPPTSQPSSPPP---PAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPL 85
           M S S A+   +P  S  SSPPP   P VVLSPCAACKILRRRC E+CVLAPYFPPT+P 
Sbjct: 1   MESKSDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPA 60

Query: 86  KFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVS 145
           KFTIAHRVFGASNIIKFLQELPESQRTDAV+SMVYEA AR+RDPVYG AGAI  LQ+QVS
Sbjct: 61  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVS 120

Query: 146 ELQAQLAKARAEVANMQQQQANLLALIC-MEMRQSPEPVWPPQLIDTACFLDDATLSSP- 205
           ELQAQLAKA+ E+ NMQ Q++NLL LI  M+ +Q  E        +   FL+D + ++  
Sbjct: 121 ELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMSFESNDLGFLEDKSNTNSS 180

Query: 206 ---WEPLWT 207
              W+PLWT
Sbjct: 181 MLWWDPLWT 189

[Close]

BLAST of Cla020073 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-54
Identity = 113/166 (68.07%), Postives = 125/166 (75.30%), Query Frame = 1


Query: 4   VAKCSNSPPTPITVPNPLSFSPMSSSSTATNFASPPTSQPSSPPPPAVVLSPCAACKILR 63
           VAK + +  TP+  P+P S SP            PP   P  PP P VVLSPCAACKILR
Sbjct: 18  VAKVTETT-TPVNSPSPTS-SP------------PPPPSPQQPPQPPVVLSPCAACKILR 77

Query: 64  RRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARL 123
           RRC +KCVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPESQRTDAV+SMVYEA AR+
Sbjct: 78  RRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARM 137

Query: 124 RDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALI 170
           RDPVYG AGAI  LQ+QVSELQAQLAK + E+  MQ Q+++LL LI
Sbjct: 138 RDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 169

[Close]

BLAST of Cla020073 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.9e-36
Identity = 74/110 (67.27%), Postives = 85/110 (77.27%), Query Frame = 1


Query: 54  SPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVS 113
           SPCAACK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 114 SMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQA 164
           SMVYEANAR+RDPVYG  GAI  LQ+Q+  LQAQLA A+AEV +++ +Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of Cla020073 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 6.5e-36
Identity = 71/108 (65.74%), Postives = 84/108 (77.78%), Query Frame = 1


Query: 54  SPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVS 113
           SPCA+CK+LRRRC + C+ APYFPP +P KF I H+VFGASN+ K LQELP  QR DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 114 SMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQ 162
           S+V+EANAR+RDPVYG  GAI  LQ QVS+LQ QLA A+AE+  +Q Q
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of Cla020073 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 5.5e-35
Identity = 69/120 (57.50%), Postives = 85/120 (70.83%), Query Frame = 1


Query: 44  SSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQEL 103
           S PP     ++PCAACK+LRRRC ++C  +PYF P EP KF   H+VFGASN+ K L E+
Sbjct: 34  SGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEV 93

Query: 104 PESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQA 163
           PESQR DA +S+VYEAN RLRDPVYG  GAI  LQ+QV  LQA+L   R+E+   +Q++A
Sbjct: 94  PESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA 153

[Close]

BLAST of Cla020073 vs. TrEMBL
Match: A0A0A0KNK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175870 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.1e-90
Identity = 165/171 (96.49%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 36  ASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASN 95
           +SPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPT+PLKFTIAHRVFGASN
Sbjct: 3   SSPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASN 62

Query: 96  IIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEV 155
           IIKFLQELPE QRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEV
Sbjct: 63  IIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEV 122

Query: 156 ANMQQQQANLLALICMEMRQSPEPVWPPQLIDTACFLDDATLSSPWEPLWT 207
           ANMQQQQANLLALICMEMRQSPEPVW PQL+DT CFLDDATLSSPWEPLWT
Sbjct: 123 ANMQQQQANLLALICMEMRQSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 173

[Close]

BLAST of Cla020073 vs. TrEMBL
Match: V7BFQ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G092000g PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.6e-76
Identity = 154/205 (75.12%), Postives = 169/205 (82.44%), Query Frame = 1


Query: 12  PTPITVPNPLSFSPMSSSSTA-----TNFASP---PTSQPSSPPPPAVVLSPCAACKILR 71
           P PI VP+ LS SP SSSS+      T F SP   P++ P SPPPP VV+SPCAACKILR
Sbjct: 15  PIPIHVPSMLSNSPPSSSSSPPSHSPTPFPSPSPSPSAAPPSPPPP-VVVSPCAACKILR 74

Query: 72  RRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARL 131
           RRCVEKCVLAPYFPPT+PLKFTIAHRVFGASNIIKFLQELPESQR DAVSSMVYEANAR+
Sbjct: 75  RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARI 134

Query: 132 RDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEP--VW 191
           RDPVYG AGAICQLQKQVSELQAQLAKA+AE+ NMQ QQANL+ALICMEM QS E   V 
Sbjct: 135 RDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLVALICMEMSQSQEQHVVQ 194

Query: 192 PPQLIDTACFLDDATLSSPWEPLWT 207
           P  L+D +CF++D T  + WEPLWT
Sbjct: 195 PQPLVDMSCFIEDNTFGTAWEPLWT 218

[Close]

BLAST of Cla020073 vs. TrEMBL
Match: A0A151U637_CAJCA (LOB domain-containing protein 1 OS=Cajanus cajan GN=KK1_007445 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 5.8e-76
Identity = 154/214 (71.96%), Postives = 170/214 (79.44%), Query Frame = 1


Query: 4   VAKCSNSPPTPITVPNPLSFSPMSSSSTA-----TNFASP----PTSQPSSPPPPAVVLS 63
           V   + SPP PI VP  LS SP SSSS+      T F SP    P + P SPPPP VV+S
Sbjct: 5   VKTTTTSPPIPIHVPTMLSNSPPSSSSSPPSQSHTPFPSPSQGSPPAAPPSPPPP-VVVS 64

Query: 64  PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSS 123
           PCAACKILRRRCVEKCVLAPYFPPT+P+KFTIAHRVFGASNIIKFLQELPESQR DAVSS
Sbjct: 65  PCAACKILRRRCVEKCVLAPYFPPTDPIKFTIAHRVFGASNIIKFLQELPESQRADAVSS 124

Query: 124 MVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMR 183
           MVYEANAR+RDPVYG AGAICQLQKQVSELQAQLAKA+AEV NMQ QQANL+ALICMEM 
Sbjct: 125 MVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALICMEMS 184

Query: 184 QSPEP--VWPPQLIDTACFLDDATLSSPWEPLWT 207
           QS +   + P   +D +CF++D T  + WEPLWT
Sbjct: 185 QSQDQNMLQPQPHVDMSCFIEDNTFGTAWEPLWT 217

[Close]

BLAST of Cla020073 vs. TrEMBL
Match: A0A0B2NUM7_GLYSO (LOB domain-containing protein 1 OS=Glycine soja GN=glysoja_000489 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.6e-76
Identity = 152/210 (72.38%), Postives = 167/210 (79.52%), Query Frame = 1


Query: 10  SPPTPITVPNPLSFSPMSSSSTA-----TNFASPPTSQPSS------PPPPAVVLSPCAA 69
           SPP PI +P  LS SP SSSS+      T F SP    PS+      PPPP VV+SPCAA
Sbjct: 13  SPPIPIHLPTMLSNSPPSSSSSPPSQSPTPFPSPSQGSPSAAPPSPPPPPPPVVVSPCAA 72

Query: 70  CKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYE 129
           CKILRRRCVEKCVLAPYFPPT+PLKFTIAHRVFGASNIIKFLQELPESQR DAVSSMVYE
Sbjct: 73  CKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYE 132

Query: 130 ANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPE 189
           ANAR+RDPVYG AGAICQLQKQVSELQAQLAKA+AEV NMQ QQANL+ALICMEM QS E
Sbjct: 133 ANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALICMEMSQSQE 192

Query: 190 P--VWPPQLIDTACFLDDATLSSPWEPLWT 207
              + P   +D +CF++D +  + WEPLWT
Sbjct: 193 QHVLQPQPHVDMSCFIEDNSFGTAWEPLWT 222

[Close]

BLAST of Cla020073 vs. TrEMBL
Match: I1NHD1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G177600 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.6e-76
Identity = 152/210 (72.38%), Postives = 167/210 (79.52%), Query Frame = 1


Query: 10  SPPTPITVPNPLSFSPMSSSSTA-----TNFASPPTSQPSS------PPPPAVVLSPCAA 69
           SPP PI +P  LS SP SSSS+      T F SP    PS+      PPPP VV+SPCAA
Sbjct: 13  SPPIPIHLPTMLSNSPPSSSSSPPSQSPTPFPSPSQGSPSAAPPSPPPPPPPVVVSPCAA 72

Query: 70  CKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYE 129
           CKILRRRCVEKCVLAPYFPPT+PLKFTIAHRVFGASNIIKFLQELPESQR DAVSSMVYE
Sbjct: 73  CKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYE 132

Query: 130 ANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPE 189
           ANAR+RDPVYG AGAICQLQKQVSELQAQLAKA+AEV NMQ QQANL+ALICMEM QS E
Sbjct: 133 ANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALICMEMSQSQE 192

Query: 190 P--VWPPQLIDTACFLDDATLSSPWEPLWT 207
              + P   +D +CF++D +  + WEPLWT
Sbjct: 193 QHVLQPQPHVDMSCFIEDNSFGTAWEPLWT 222

[Close]

BLAST of Cla020073 vs. NCBI nr
Match: gi|449451890|ref|XP_004143693.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 374.0 bits (959), Expect = 1.7e-100
Identity = 190/211 (90.05%), Postives = 194/211 (91.94%), Query Frame = 1


Query: 1   MAYVAKCSN-SPPTPITVPN----PLSFSPMSSSSTATNFASPPTSQPSSPPPPAVVLSP 60
           MAYVAKC+N SPPTPI+V N    PLSFSPMSSS        PPTSQPSSPPPPAVVLSP
Sbjct: 1   MAYVAKCTNNSPPTPISVNNNPNNPLSFSPMSSS--------PPTSQPSSPPPPAVVLSP 60

Query: 61  CAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSM 120
           CAACKILRRRCVEKCVLAPYFPPT+PLKFTIAHRVFGASNIIKFLQELPE QRTDAVSSM
Sbjct: 61  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM 120

Query: 121 VYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQ 180
           VYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQ
Sbjct: 121 VYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQ 180

Query: 181 SPEPVWPPQLIDTACFLDDATLSSPWEPLWT 207
           SPEPVW PQL+DT CFLDDATLSSPWEPLWT
Sbjct: 181 SPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 203

[Close]

BLAST of Cla020073 vs. NCBI nr
Match: gi|659090144|ref|XP_008445860.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 2.4e-99
Identity = 188/211 (89.10%), Postives = 192/211 (91.00%), Query Frame = 1


Query: 1   MAYVAKCSN-SPPTPITVPN----PLSFSPMSSSSTATNFASPPTSQPSSPPPPAVVLSP 60
           MAYVAKC+N SPPTPI+  N    PLSFSPMSSS        PPTSQPSSPPPP VVLSP
Sbjct: 1   MAYVAKCTNNSPPTPISFNNNPNNPLSFSPMSSS--------PPTSQPSSPPPPPVVLSP 60

Query: 61  CAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSM 120
           CAACKILRRRCVEKCVLAPYFPPT+PLKFTIAHRVFGASNIIKFLQELPE QRTDAVSSM
Sbjct: 61  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSM 120

Query: 121 VYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQ 180
           VYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQ
Sbjct: 121 VYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQ 180

Query: 181 SPEPVWPPQLIDTACFLDDATLSSPWEPLWT 207
           SPEPVW PQL+DT CFLDDATLSSPWEPLWT
Sbjct: 181 SPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 203

[Close]

BLAST of Cla020073 vs. NCBI nr
Match: gi|700195287|gb|KGN50464.1| (hypothetical protein Csa_5G175870 [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 1.6e-90
Identity = 165/171 (96.49%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 36  ASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASN 95
           +SPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPT+PLKFTIAHRVFGASN
Sbjct: 3   SSPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASN 62

Query: 96  IIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEV 155
           IIKFLQELPE QRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEV
Sbjct: 63  IIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEV 122

Query: 156 ANMQQQQANLLALICMEMRQSPEPVWPPQLIDTACFLDDATLSSPWEPLWT 207
           ANMQQQQANLLALICMEMRQSPEPVW PQL+DT CFLDDATLSSPWEPLWT
Sbjct: 123 ANMQQQQANLLALICMEMRQSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 173

[Close]

BLAST of Cla020073 vs. NCBI nr
Match: gi|593686006|ref|XP_007143674.1| (hypothetical protein PHAVU_007G092000g [Phaseolus vulgaris])

HSP 1 Score: 293.1 bits (749), Expect = 3.7e-76
Identity = 154/205 (75.12%), Postives = 169/205 (82.44%), Query Frame = 1


Query: 12  PTPITVPNPLSFSPMSSSSTA-----TNFASP---PTSQPSSPPPPAVVLSPCAACKILR 71
           P PI VP+ LS SP SSSS+      T F SP   P++ P SPPPP VV+SPCAACKILR
Sbjct: 15  PIPIHVPSMLSNSPPSSSSSPPSHSPTPFPSPSPSPSAAPPSPPPP-VVVSPCAACKILR 74

Query: 72  RRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARL 131
           RRCVEKCVLAPYFPPT+PLKFTIAHRVFGASNIIKFLQELPESQR DAVSSMVYEANAR+
Sbjct: 75  RRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARI 134

Query: 132 RDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEP--VW 191
           RDPVYG AGAICQLQKQVSELQAQLAKA+AE+ NMQ QQANL+ALICMEM QS E   V 
Sbjct: 135 RDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLVALICMEMSQSQEQHVVQ 194

Query: 192 PPQLIDTACFLDDATLSSPWEPLWT 207
           P  L+D +CF++D T  + WEPLWT
Sbjct: 195 PQPLVDMSCFIEDNTFGTAWEPLWT 218

[Close]

BLAST of Cla020073 vs. NCBI nr
Match: gi|1012363571|gb|KYP74754.1| (LOB domain-containing protein 1 [Cajanus cajan])

HSP 1 Score: 292.0 bits (746), Expect = 8.3e-76
Identity = 154/214 (71.96%), Postives = 170/214 (79.44%), Query Frame = 1


Query: 4   VAKCSNSPPTPITVPNPLSFSPMSSSSTA-----TNFASP----PTSQPSSPPPPAVVLS 63
           V   + SPP PI VP  LS SP SSSS+      T F SP    P + P SPPPP VV+S
Sbjct: 5   VKTTTTSPPIPIHVPTMLSNSPPSSSSSPPSQSHTPFPSPSQGSPPAAPPSPPPP-VVVS 64

Query: 64  PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSS 123
           PCAACKILRRRCVEKCVLAPYFPPT+P+KFTIAHRVFGASNIIKFLQELPESQR DAVSS
Sbjct: 65  PCAACKILRRRCVEKCVLAPYFPPTDPIKFTIAHRVFGASNIIKFLQELPESQRADAVSS 124

Query: 124 MVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMR 183
           MVYEANAR+RDPVYG AGAICQLQKQVSELQAQLAKA+AEV NMQ QQANL+ALICMEM 
Sbjct: 125 MVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALICMEMS 184

Query: 184 QSPEP--VWPPQLIDTACFLDDATLSSPWEPLWT 207
           QS +   + P   +D +CF++D T  + WEPLWT
Sbjct: 185 QSQDQNMLQPQPHVDMSCFIEDNTFGTAWEPLWT 217

The following BLAST results are available for this feature:

BLAST of Cla020073 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD1_ARATH	4.6e-58	65.08	LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1	[more]
LBD11_ARATH	1.1e-54	68.07	LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2	[more]
LBD4_ARATH	4.9e-36	67.27	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD12_ARATH	6.5e-36	65.74	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD15_ARATH	5.5e-35	57.50	LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2	[more]

BLAST of Cla020073 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNK9_CUCSA	1.1e-90	96.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175870 PE=4 SV=1	[more]
V7BFQ1_PHAVU	2.6e-76	75.12	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G092000g PE=4 SV=1	[more]
A0A151U637_CAJCA	5.8e-76	71.96	LOB domain-containing protein 1 OS=Cajanus cajan GN=KK1_007445 PE=4 SV=1	[more]
A0A0B2NUM7_GLYSO	7.6e-76	72.38	LOB domain-containing protein 1 OS=Glycine soja GN=glysoja_000489 PE=4 SV=1	[more]
I1NHD1_SOYBN	7.6e-76	72.38	Uncharacterized protein OS=Glycine max GN=GLYMA_20G177600 PE=4 SV=1	[more]

BLAST of Cla020073 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451890\|ref\|XP_004143693.1\|	1.7e-100	90.05	PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]	[more]
gi\|659090144\|ref\|XP_008445860.1\|	2.4e-99	89.10	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]
gi\|700195287\|gb\|KGN50464.1\|	1.6e-90	96.49	hypothetical protein Csa_5G175870 [Cucumis sativus]	[more]
gi\|593686006\|ref\|XP_007143674.1\|	3.7e-76	75.12	hypothetical protein PHAVU_007G092000g [Phaseolus vulgaris]	[more]
gi\|1012363571\|gb\|KYP74754.1\|	8.3e-76	71.96	LOB domain-containing protein 1 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005951	carbamoyl-phosphate synthase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla020073	Cla020073.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 55..152 score: 6.8
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 54..155 score: 2
None	No IPR available	unknown	Coil	Coil	coord: 134..168 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 29..205 score: 8.2E
None	No IPR available	PANTHER	PTHR31301:SF14	LOB DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 29..205 score: 8.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla020073	Cla97C02G039560	Watermelon (97103) v2	wmwmbB316
Cla020073	Csa5G175870	Cucumber (Chinese Long) v2	cuwmB428
Cla020073	MELO3C011730	Melon (DHL92) v3.5.1	mewmB071
Cla020073	ClCG02G013910	Watermelon (Charleston Gray)	wcgwmB197
Cla020073	CSPI05G08810	Wild cucumber (PI 183967)	cpiwmB440
Cla020073	Cucsa.166030	Cucumber (Gy14) v1	cgywmB310
Cla020073	CmaCh04G012420	Cucurbita maxima (Rimu)	cmawmB723
Cla020073	CmaCh04G002720	Cucurbita maxima (Rimu)	cmawmB724
Cla020073	CmoCh04G013150	Cucurbita moschata (Rifu)	cmowmB719
Cla020073	CmoCh04G002770	Cucurbita moschata (Rifu)	cmowmB720
Cla020073	Lsi04G008120	Bottle gourd (USVL1VR-Ls)	lsiwmB331
Cla020073	Cp4.1LG01g10320	Cucurbita pepo (Zucchini)	cpewmB451
Cla020073	Cp4.1LG01g04270	Cucurbita pepo (Zucchini)	cpewmB452
Cla020073	CsGy5G006200	Cucumber (Gy14) v2	cgybwmB401
Cla020073	MELO3C011730.2	Melon (DHL92) v3.6.1	medwmB070
Cla020073	Carg02065	Silver-seed gourd	carwmB0844
Cla020073	Carg25670	Silver-seed gourd	carwmB0852
Cla020073	CsaV3_5G006250	Cucumber (Chinese Long) v3	cucwmB454
Cla020073	Bhi07G000881	Wax gourd	wgowmB561

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla020073	Cucumber (Chinese Long) v2	cuwmB268