Csa4G095560 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G095560
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	50S ribosomal protein L23; contains IPR013025 (Ribosomal protein L25/L23)
Location	Chr4 : 6253706 .. 6254851 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGTTTGGTTTGGGTCGGTCTGATTTATATTAAAACCATCCAAAATCTAACCGAACCGAGGATACATAAAATCCTTTACCAATTAGTCCTAAACCCTGTCTACGACCGCTATTATCCCAGCAGAAGGCCTAATAGTCCCAGCAGTGCACCTCGCCGTTCGGTCCCAAATCCCTTCAGTTCGCTGAAAGCTTGCGAGTACAAATCTACAATCCACAGGTTTGATTCCAATGTGAACCTCCTCTCTTTCAATTAACTTTTTAGATCTTGGTTTCTTGTTCTTGTTGTTTTAATTGGAGTTGAATTTGTAATTGGGTTTTCAAAGGATCTCTTCACCTGCTGTTCATAGACGCGGAAGCCAAGAAATCCAGGAACATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCTTTTACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCAAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATTTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCCTTGTCAATATCTCCGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAGCAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAAGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAAGTGGCGGTGGCGCTGAAACGGTTGAGCCATCAACTAAATTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTGGTAGTGTGAAGAAACGTATCCAGTTACTTCCTAATTGTCATATTTTGGATTTTGTTATCCTCAAAATGATAATAGTGCAATAGGTTGGTGATGGCTTTGAGCTTACTGATAGATGTTTTATTTTTTAACTATGAAATGAACTTCTTGGCCCTCTTATGGGATGTTTTGCTGGAGGAAGTTCTGTTTTGTTGCTTGAATCAATAAATAAATTAGAGTTGCATTTGTATTATTCCCCTCGTATTATGT

mRNA sequence

ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCTTTTACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCAAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATTTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCCTTGTCAATATCTCCGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAGCAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAAGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAAGTGGCGGTGGCGCTGAAACGGTTGAGCCATCAACTAAATTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

Coding sequence (CDS)

ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCTTTTACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCAAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATTTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCCTTGTCAATATCTCCGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAGCAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAAGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAAGTGGCGGTGGCGCTGAAACGGTTGAGCCATCAACTAAATTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

Protein sequence

MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR*

Homology

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BLAST of Csa4G095560 vs. Swiss-Prot
Match: RL23_METCA (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=rplW PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 24/60 (40.00%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR 89
          +   +  P+ASK++IK  +E ++G +VD V+ LN++GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

[Close]

BLAST of Csa4G095560 vs. Swiss-Prot
Match: RL23_HAES1 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 1


Query: 26 TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDY 85
          TN TE    I  K    A+K+EI   +E L+  +VD V+T+ ++GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 86 KKAYVTLRNPLSI 95
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

[Close]

BLAST of Csa4G095560 vs. Swiss-Prot
Match: RL23_AERHH (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240) GN=rplW PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-06
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 1


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ V+TLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of Csa4G095560 vs. Swiss-Prot
Match: RL23_PROMH (50S ribosomal protein L23 OS=Proteus mirabilis (strain HI4320) GN=rplW PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 1


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR 90
          I LK    A+K EIK  ++ L+  EV+ V TL M+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVESVNTLLMKGKVKRHGQRIGRRSDWKKAYVTLK 88

[Close]

BLAST of Csa4G095560 vs. Swiss-Prot
Match: RL23_AERS4 (50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) GN=rplW PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 1


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ V+TLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88

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BLAST of Csa4G095560 vs. TrEMBL
Match: A0A0A0L0J2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 4.4e-93
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Csa4G095560 vs. TrEMBL
Match: A5BVA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012657 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.1e-66
Identity = 130/174 (74.71%), Postives = 148/174 (85.06%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRV++F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KV+
Sbjct: 310 MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 369

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 370 TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 429

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK HWL  K+    +  K  A+RGR   GG A     + KFPWS MR+ R
Sbjct: 430 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAAA---AAKFPWSGMRASR 480

[Close]

BLAST of Csa4G095560 vs. TrEMBL
Match: A0A067LED8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.7e-66
Identity = 135/172 (78.49%), Postives = 149/172 (86.63%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVV+FANLPIKLLMPT+FTNI EIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVNFANLPIKLLMPTTFTNIREIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGIL+AKPDYKKAYVTLRNPLS+SPD+YP+RIIEE+K  MNKQ +SSIV
Sbjct: 61  TLNMEGKKKKRGGILLAKPDYKKAYVTLRNPLSVSPDLYPLRIIEEEKERMNKQRRSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 173
           E+GE KKHWL  K+   + + KG   R R R G G  TVE + KFPWSSMRS
Sbjct: 121 EDGEGKKHWLDGKKEERVGSEKG---RRRDRGGVGDFTVE-NAKFPWSSMRS 168

[Close]

BLAST of Csa4G095560 vs. TrEMBL
Match: D7T5V5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0742g00020 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.7e-66
Identity = 130/174 (74.71%), Postives = 148/174 (85.06%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRV++F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KV+
Sbjct: 1   MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK HWL  K+    +  K  A+RGR   GG A     + KFPWS MR+ R
Sbjct: 121 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAA----AAAKFPWSGMRASR 170

[Close]

BLAST of Csa4G095560 vs. TrEMBL
Match: A0A059AL68_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 129/174 (74.14%), Postives = 146/174 (83.91%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+L+AKPDYKKAYVTLR+PLS+SPD++PIR++EED+R+ NK+  SS+V
Sbjct: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRSPLSVSPDLFPIRVVEEDRRSANKKGGSSMV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 175
           EEGE K+HWL  +E    K  K F +R R  SG          KFPWS M+SGR
Sbjct: 121 EEGERKRHWLDGEERERRKREKEFGERVRGGSG---------AKFPWSFMKSGR 165

[Close]

BLAST of Csa4G095560 vs. TAIR10
Match: AT4G39880.1 (AT4G39880.1 Ribosomal protein L23/L15e family protein)

HSP 1 Score: 211.5 bits (537), Expect = 4.3e-55
Identity = 114/175 (65.14%), Postives = 129/175 (73.71%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGG+LIAK DYKKAYVTLR+PLSIS D++P++ IEED+++  K S S + 
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGS-SFVE 120

Query: 121 EEGEAKKHWLHEKEPVGIKTY-KGFADRGRRRSGG---GAETVEPSTKFPWSSMR 172
           EE + K HWL  KE   I  Y KG   RG  R+     G      + KFPWS+MR
Sbjct: 121 EEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

[Close]

BLAST of Csa4G095560 vs. NCBI nr
Match: gi|449438835|ref|XP_004137193.1| (PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 6.4e-93
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Csa4G095560 vs. NCBI nr
Match: gi|659111130|ref|XP_008455593.1| (PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo])

HSP 1 Score: 339.3 bits (869), Expect = 3.9e-90
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Csa4G095560 vs. NCBI nr
Match: gi|147784232|emb|CAN63891.1| (hypothetical protein VITISV_012657 [Vitis vinifera])

HSP 1 Score: 260.0 bits (663), Expect = 3.0e-66
Identity = 130/174 (74.71%), Postives = 148/174 (85.06%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRV++F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KV+
Sbjct: 310 MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 369

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 370 TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 429

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK HWL  K+    +  K  A+RGR   GG A     + KFPWS MR+ R
Sbjct: 430 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAAA---AAKFPWSGMRASR 480

[Close]

BLAST of Csa4G095560 vs. NCBI nr
Match: gi|802537037|ref|XP_012089859.1| (PREDICTED: uncharacterized protein LOC105648139 [Jatropha curcas])

HSP 1 Score: 259.6 bits (662), Expect = 3.9e-66
Identity = 135/172 (78.49%), Postives = 149/172 (86.63%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRVV+FANLPIKLLMPT+FTNI EIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVNFANLPIKLLMPTTFTNIREIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGIL+AKPDYKKAYVTLRNPLS+SPD+YP+RIIEE+K  MNKQ +SSIV
Sbjct: 61  TLNMEGKKKKRGGILLAKPDYKKAYVTLRNPLSVSPDLYPLRIIEEEKERMNKQRRSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRS 173
           E+GE KKHWL  K+   + + KG   R R R G G  TVE + KFPWSSMRS
Sbjct: 121 EDGEGKKHWLDGKKEERVGSEKG---RRRDRGGVGDFTVE-NAKFPWSSMRS 168

[Close]

BLAST of Csa4G095560 vs. NCBI nr
Match: gi|731438556|ref|XP_010647317.1| (PREDICTED: uncharacterized protein LOC100245960 isoform X2 [Vitis vinifera])

HSP 1 Score: 259.6 bits (662), Expect = 3.9e-66
Identity = 130/174 (74.71%), Postives = 148/174 (85.06%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60
           MGSRLGRRV++F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KV+
Sbjct: 1   MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 120

Query: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK HWL  K+    +  K  A+RGR   GG A     + KFPWS MR+ R
Sbjct: 121 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAA----AAAKFPWSGMRASR 170

The following BLAST results are available for this feature:

BLAST of Csa4G095560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL23_METCA	1.2e-06	40.00	50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
RL23_HAES1	2.0e-06	41.10	50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) GN=rplW PE=3 SV=1	[more]
RL23_AERHH	2.7e-06	44.07	50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC...	[more]
RL23_PROMH	3.5e-06	45.76	50S ribosomal protein L23 OS=Proteus mirabilis (strain HI4320) GN=rplW PE=3 SV=1	[more]
RL23_AERS4	3.5e-06	44.07	50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) GN=rplW PE=3 SV...	[more]

BLAST of Csa4G095560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0J2_CUCSA	4.4e-93	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1	[more]
A5BVA7_VITVI	2.1e-66	74.71	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012657 PE=4 SV=1	[more]
A0A067LED8_JATCU	2.7e-66	78.49	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1	[more]
D7T5V5_VITVI	2.7e-66	74.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0742g00020 PE=4 SV=...	[more]
A0A059AL68_EUCGR	1.5e-64	74.14	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1	[more]

BLAST of Csa4G095560 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39880.1	4.3e-55	65.14	Ribosomal protein L23/L15e family protein	[more]

BLAST of Csa4G095560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438835\|ref\|XP_004137193.1\|	6.4e-93	100.00	PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus]	[more]
gi\|659111130\|ref\|XP_008455593.1\|	3.9e-90	97.13	PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo]	[more]
gi\|147784232\|emb\|CAN63891.1\|	3.0e-66	74.71	hypothetical protein VITISV_012657 [Vitis vinifera]	[more]
gi\|802537037\|ref\|XP_012089859.1\|	3.9e-66	78.49	PREDICTED: uncharacterized protein LOC105648139 [Jatropha curcas]	[more]
gi\|731438556\|ref\|XP_010647317.1\|	3.9e-66	74.71	PREDICTED: uncharacterized protein LOC100245960 isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR013025	Ribosomal_L25/23

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0015992	proton transport
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0034654	nucleobase-containing compound biosynthetic process
biological_process	GO:0044699	single-organism process
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005351	sugar:proton symporter activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU097441	cucumber EST collection version 3.0	transcribed_cluster
CU141066	cucumber EST collection version 3.0	transcribed_cluster
CU174948	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G095560.1	Csa4G095560.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU097441	CU097441	transcribed_cluster
CU174948	CU174948	transcribed_cluster
CU141066	CU141066	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 30..94 score: 1.4
IPR012678	Ribosomal protein L23/L15e core domain	unknown	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 26..94 score: 1.19
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 30..90 score: 1.6
None	No IPR available	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 5..172 score: 7.6
None	No IPR available	PANTHER	PTHR12059:SF5	39S RIBOSOMAL PROTEIN L23, MITOCHONDRIAL	coord: 5..172 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G095560	Cla004827	Watermelon (97103) v1	cuwmB294
Csa4G095560	MELO3C018951	Melon (DHL92) v3.5.1	cumeB303
Csa4G095560	ClCG10G009000	Watermelon (Charleston Gray)	cuwcgB276
Csa4G095560	MELO3C018951.2	Melon (DHL92) v3.6.1	cumedB288
Csa4G095560	Cla97C10G192200	Watermelon (97103) v2	cuwmbB276
Csa4G095560	Bhi11G000833	Wax gourd	cuwgoB361
Csa4G095560	CSPI04G08650	Wild cucumber (PI 183967)	cpicuB182
Csa4G095560	Cucsa.273070	Cucumber (Gy14) v1	cgycuB389
Csa4G095560	CmaCh04G008240	Cucurbita maxima (Rimu)	cmacuB711
Csa4G095560	CmoCh04G008810	Cucurbita moschata (Rifu)	cmocuB703
Csa4G095560	CmoCh16G007660	Cucurbita moschata (Rifu)	cmocuB323
Csa4G095560	Cp4.1LG14g01280	Cucurbita pepo (Zucchini)	cpecuB220
Csa4G095560	CsGy4G008480	Cucumber (Gy14) v2	cgybcuB165
Csa4G095560	Carg14224	Silver-seed gourd	carcuB0956
Csa4G095560	Carg05824	Silver-seed gourd	carcuB1032

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G095560	Cucurbita maxima (Rimu)	cmacuB335
Csa4G095560	Cucurbita pepo (Zucchini)	cpecuB404
Csa4G095560	Bottle gourd (USVL1VR-Ls)	culsiB281