CU174948 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU174948
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 6254352 .. 6254497 (+)
Sequence length153
The following sequences are available for this feature:

transcribed_cluster sequence

TTGTCAATATCTCCGGACATTGTTACCCCGTATTCCGTCATTTATAGAGGAGGATAAGAGGAATATGAACAAAGCAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAAGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAA
BLAST of CU174948 vs. TrEMBL
Match: A0A0A0L0J2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 3

Query: 72  KQSKSSIVEEGEAKKHWLHEKEPVGIK 131
           KQSKSSIVEEGEAKKHWLHEKEPVGIK
Sbjct: 113 KQSKSSIVEEGEAKKHWLHEKEPVGIK 139

Query: 132 153
           
Sbjct: 173 139

BLAST of CU174948 vs. NCBI nr
Match: gi|449438835|ref|XP_004137193.1| (PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 3

Query: 72  KQSKSSIVEEGEAKKHWLHEKEPVGIK 131
           KQSKSSIVEEGEAKKHWLHEKEPVGIK
Sbjct: 113 KQSKSSIVEEGEAKKHWLHEKEPVGIK 139

Query: 132 153
           
Sbjct: 173 139

BLAST of CU174948 vs. NCBI nr
Match: gi|659111130|ref|XP_008455593.1| (PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-06
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 3

Query: 72  KQSKSSIVEEGEAKKHWLHEKEPVGIK 131
           KQSKSSIVEEGEAK+HWLHEKEPVGIK
Sbjct: 113 KQSKSSIVEEGEAKRHWLHEKEPVGIK 139

Query: 132 153
           
Sbjct: 173 139

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L0J2_CUCSA1.5e-06100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449438835|ref|XP_004137193.1|2.2e-06100.00PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus][more]
gi|659111130|ref|XP_008455593.1|4.9e-0696.30PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G095560Csa4G095560gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0172395H0172395EST