Cla97C10G192200 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G192200
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	50S ribosomal protein L23
Location	Cla97Chr10 : 18456251 .. 18456772 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCATCTGCTTCCAAAATCGAAATTAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAGGAGCCTGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAACTGACGGTGCTGAAACCGTTGAACCATCGACTAAGTTTCCCTGGAGTAGCATGAGGTCTGGTAGGTAG

mRNA sequence

ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCATCTGCTTCCAAAATCGAAATTAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAGGAGCCTGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAACTGACGGTGCTGAAACCGTTGAACCATCGACTAAGTTTCCCTGGAGTAGCATGAGGTCTGGTAGGTAG

Coding sequence (CDS)

ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCATCTGCTTCCAAAATCGAAATTAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAGGAGCCTGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAACTGACGGTGCTGAAACCGTTGAACCATCGACTAAGTTTCCCTGGAGTAGCATGAGGTCTGGTAGGTAG

Protein sequence

MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR

Homology

[Close]

BLAST of Cla97C10G192200 vs. NCBI nr
Match: XP_023531609.1 (uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.5 bits (846), Expect = 3.5e-87
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKE VGLKTYKGFADRGRRR  GAE VEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Cla97C10G192200 vs. NCBI nr
Match: XP_004137193.1 (PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus] >KGN53646.1 hypothetical protein Csa_4G095560 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 2.9e-86
Identity = 165/174 (94.83%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRT-DGAETVEPSTKFPWSSMRSGR 174
           EEGEAK+HWLHEKEPVG+KTYKGFADRGRRR+  GAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Cla97C10G192200 vs. NCBI nr
Match: XP_022943267.1 (uncharacterized protein LOC111448049 [Cucurbita moschata])

HSP 1 Score: 327.0 bits (837), Expect = 3.8e-86
Identity = 166/173 (95.95%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           M SRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKE VGLKTYKGFADRGRRR  GAE VEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Cla97C10G192200 vs. NCBI nr
Match: XP_022929525.1 (uncharacterized protein LOC111436066 [Cucurbita moschata])

HSP 1 Score: 326.6 bits (836), Expect = 5.0e-86
Identity = 165/173 (95.38%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPVG K YKGF++R RRRT  AETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Cla97C10G192200 vs. NCBI nr
Match: XP_022985025.1 (uncharacterized protein LOC111483116 [Cucurbita maxima])

HSP 1 Score: 325.5 bits (833), Expect = 1.1e-85
Identity = 164/173 (94.80%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPVG K YKGF+DR RRRT  AETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSDRSRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Cla97C10G192200 vs. TrEMBL
Match: tr|A0A0A0L0J2|A0A0A0L0J2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.9e-86
Identity = 165/174 (94.83%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRT-DGAETVEPSTKFPWSSMRSGR 174
           EEGEAK+HWLHEKEPVG+KTYKGFADRGRRR+  GAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Cla97C10G192200 vs. TrEMBL
Match: tr|A0A1S3C191|A0A1S3C191_CUCME (uncharacterized protein LOC103495731 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495731 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 9.6e-86
Identity = 165/174 (94.83%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRT-DGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPVG+KTYKGFADRGRRR   GAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Cla97C10G192200 vs. TrEMBL
Match: tr|A0A1S4E0P8|A0A1S4E0P8_CUCME (uncharacterized protein LOC103495731 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495731 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 3.6e-85
Identity = 164/173 (94.80%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRT-DGAETVEPSTKFPWSSMRSG 173
           EEGEAKRHWLHEKEPVG+KTYKGFADRGRRR   GAETVEPSTKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG 173

[Close]

BLAST of Cla97C10G192200 vs. TrEMBL
Match: tr|A0A2I4GE82|A0A2I4GE82_9ROSI (uncharacterized protein LOC108989236 OS=Juglans regia OX=51240 GN=LOC109007104 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.6e-64
Identity = 135/171 (78.95%), Postives = 145/171 (84.80%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+H ANLPIKLLMP++FTNI EIALKTIPSASKIEIKRVLESLYGFEV+KVR
Sbjct: 1   MGSRLGRRVVHMANLPIKLLMPSTFTNIQEIALKTIPSASKIEIKRVLESLYGFEVEKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISP++YPIRIIEEDKR MN+QSKSS+V
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPEMYPIRIIEEDKRQMNRQSKSSVV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRS 172
           EEGE KRHWL EK     K  + F +RGR    G        KFPWSSMRS
Sbjct: 121 EEGEGKRHWLDEKARAE-KAGERFGNRGRTGQRG-----DVAKFPWSSMRS 165

[Close]

BLAST of Cla97C10G192200 vs. TrEMBL
Match: tr|D7T5V5|D7T5V5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0742g00020 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.8e-63
Identity = 130/173 (75.14%), Postives = 145/173 (83.82%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVI+F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVR
Sbjct: 1   MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR 174
           EEGEAK HWL  K+    +  K  A+RGR           + KFPWS MR+ R
Sbjct: 121 EEGEAKSHWLDGKDGDRFRPEKSSAERGR---GXXXXXXAAAKFPWSGMRASR 170

[Close]

BLAST of Cla97C10G192200 vs. Swiss-Prot
Match: sp|Q605B4|RL23_METCA (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=rplW PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.2e-07
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 89
          +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

[Close]

BLAST of Cla97C10G192200 vs. Swiss-Prot
Match: sp|Q0I161|RL23_HAES1 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 26 TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 85
          TN TE    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 86 KKAYVTLRNPLSI 95
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

[Close]

BLAST of Cla97C10G192200 vs. Swiss-Prot
Match: sp|A0KF23|RL23_AERHH (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240) OX=380703 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of Cla97C10G192200 vs. Swiss-Prot
Match: sp|A4ST04|RL23_AERS4 (50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of Cla97C10G192200 vs. Swiss-Prot
Match: sp|Q0ABH3|RL23_ALKEH (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 89
          E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G L   +PD+KKAYVTL
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTL 86

[Close]

BLAST of Cla97C10G192200 vs. TAIR10
Match: AT4G39880.1 (Ribosomal protein L23/L15e family protein)

HSP 1 Score: 206.8 bits (525), Expect = 1.0e-53
Identity = 114/175 (65.14%), Postives = 131/175 (74.86%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RV+HFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAK DYKKAYVTLR+PLSIS D++P++ IEED+++  K S S + 
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGS-SFVE 120

Query: 121 EEGEAKRHWLHEKEPVGLKTY-KGFADRGRRR----TDGAETVEPSTKFPWSSMR 171
           EE + K HWL  KE   +  Y KG   RG  R    T G      + KFPWS+MR
Sbjct: 121 EEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

The following BLAST results are available for this feature:

BLAST of Cla97C10G192200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531609.1	3.5e-87	96.53	uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo]	[more]
XP_004137193.1	2.9e-86	94.83	PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus] >KGN53646.1 hy...	[more]
XP_022943267.1	3.8e-86	95.95	uncharacterized protein LOC111448049 [Cucurbita moschata]	[more]
XP_022929525.1	5.0e-86	95.38	uncharacterized protein LOC111436066 [Cucurbita moschata]	[more]
XP_022985025.1	1.1e-85	94.80	uncharacterized protein LOC111483116 [Cucurbita maxima]	[more]

BLAST of Cla97C10G192200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0J2\|A0A0A0L0J2_CUCSA	1.9e-86	94.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=4 SV=1	[more]
tr\|A0A1S3C191\|A0A1S3C191_CUCME	9.6e-86	94.83	uncharacterized protein LOC103495731 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4E0P8\|A0A1S4E0P8_CUCME	3.6e-85	94.80	uncharacterized protein LOC103495731 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I4GE82\|A0A2I4GE82_9ROSI	3.6e-64	78.95	uncharacterized protein LOC108989236 OS=Juglans regia OX=51240 GN=LOC109007104 P...	[more]
tr\|D7T5V5\|D7T5V5_VITVI	1.8e-63	75.14	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0742g00020 PE=4 SV=...	[more]

BLAST of Cla97C10G192200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q605B4\|RL23_METCA	9.2e-07	41.67	50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
sp\|Q0I161\|RL23_HAES1	1.2e-06	42.47	50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW...	[more]
sp\|A0KF23\|RL23_AERHH	1.6e-06	45.76	50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC...	[more]
sp\|A4ST04\|RL23_AERS4	2.0e-06	45.76	50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rp...	[more]
sp\|Q0ABH3\|RL23_ALKEH	2.0e-06	45.76	50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D...	[more]

BLAST of Cla97C10G192200 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39880.1	1.0e-53	65.14	Ribosomal protein L23/L15e family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR013025	Ribosomal_L25/23
IPR012677	Nucleotide-bd_a/b_plait_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009408	response to heat
biological_process	GO:0006457	protein folding
biological_process	GO:0044699	single-organism process
biological_process	GO:0034654	nucleobase-containing compound biosynthetic process
biological_process	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0015992	proton transport
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0008643	carbohydrate transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0000139	Golgi membrane
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0005351	sugar:proton symporter activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G192200.1	Cla97C10G192200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 4..135 e-value: 6.1E-21 score: 77.0
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 30..90 e-value: 1.3E-15 score: 57.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..173
None	No IPR available	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 6..135
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 9..94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G192200	Cla004827	Watermelon (97103) v1	wmwmbB059
Cla97C10G192200	Csa4G095560	Cucumber (Chinese Long) v2	cuwmbB276
Cla97C10G192200	MELO3C018951	Melon (DHL92) v3.5.1	mewmbB466
Cla97C10G192200	ClCG10G009000	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G192200	CSPI04G08650	Wild cucumber (PI 183967)	cpiwmbB283
Cla97C10G192200	Cucsa.273070	Cucumber (Gy14) v1	cgywmbB476
Cla97C10G192200	CmaCh04G008240	Cucurbita maxima (Rimu)	cmawmbB718
Cla97C10G192200	CmaCh16G007080	Cucurbita maxima (Rimu)	cmawmbB336
Cla97C10G192200	CmoCh16G007660	Cucurbita moschata (Rifu)	cmowmbB322
Cla97C10G192200	CmoCh04G008810	Cucurbita moschata (Rifu)	cmowmbB689
Cla97C10G192200	CsGy4G008480	Cucumber (Gy14) v2	cgybwmbB263
Cla97C10G192200	MELO3C018951.2	Melon (DHL92) v3.6.1	medwmbB459
Cla97C10G192200	Carg14224	Silver-seed gourd	carwmbB0988
Cla97C10G192200	Carg05824	Silver-seed gourd	carwmbB1076
Cla97C10G192200	CsaV3_4G008860	Cucumber (Chinese Long) v3	cucwmbB278
Cla97C10G192200	Bhi11G000833	Wax gourd	wgowmbB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G192200	Cucumber (Gy14) v2	cgybwmbB261
Cla97C10G192200	Cucumber (Gy14) v1	cgywmbB680
Cla97C10G192200	Cucurbita moschata (Rifu)	cmowmbB316
Cla97C10G192200	Melon (DHL92) v3.6.1	medwmbB458
Cla97C10G192200	Bottle gourd (USVL1VR-Ls)	lsiwmbB218
Cla97C10G192200	Melon (DHL92) v3.6.1	medwmbB455
Cla97C10G192200	Melon (DHL92) v3.5.1	mewmbB461