MELO3C018951 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018951
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	50S ribosomal protein L23
Location	chr7 : 13954282 .. 13956218 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCGAAATCGACCGACCGAGCCGAGGTACATAAAAACCCTTACCAATTGTCCTCAACCCTGTCTACGACCGCTATTATCTCAGCACAAGACCTAACAATCCCAGCACTGCACCTCGCCGTTCGGTCCCAAATCCCTTCAGTTCGTTGAAAGCTTGCAAGTACAAATCTACTATTCTCAGGTTTCATTCCATTGTGAACCTCCCGTGTTTCAAGTAACTGTTTAGATCTTGGTTTCTTGTTCTTGTTGGGTTTGATTTGATGTTGTTTCAAGCAGATTGGAGTTAGAATTTGTAATTGGGTTTTCAAAGGATCTGTTCATCGGCTGTTCATTCGACGCGGAAGCCAAGAAATCCAGGAACATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCTAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTCAGGTCGATAAAGTTCGAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATTTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCTTTGTCAATCTCTCAGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAGGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAATTGGCGGCGGCGCTGAAACGGTTGAGCCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTGGTAGTGTGAAGAAACGTATCTCAGTTACTTCCTAATTGTCATTTGGTTTGGATTTTGTTTTCCTCTAAATGATAATAGTGCATTAGGTTGGTGATGGCTTTGAGCTTACTGATAAATGTTTATTTTCTAACTATGAAATGAACTTCTTGGCCCTCCTATGGGATTTTTTTCTGGAGGAAGTTCTGTTTTGTTGATTGAATCAATAAATAAATTAGAGTTGCATTTGTATTATTTCCCTTGTATTATGTGAATTCTACTTAGATAATTTCAGTATGTGGAGTAGGTTCACTATCAAATATTCGATGGCAATATTGTGGTTATAGTGAATTTGCACATGAAACCACATGCACTATGAAAAACTTAATGCGTAGAGATTTTGTATATTTTATCAAATAATTTACTTAATGCATAGAGATTTATGTATTTTATCAAATAATTTTTCGTTTTTTTACTGCAGAGAGTGTTTGTAGCTATTGTCGTTTGTCTGCCTTAGGACTTTTCAGGC

mRNA sequence

ATCCGAAATCGACCGACCGAGCCGAGGTACATAAAAACCCTTACCAATTGTCCTCAACCCTGTCTACGACCGCTATTATCTCAGCACAAGACCTAACAATCCCAGCACTGCACCTCGCCGTTCGGTCCCAAATCCCTTCAGTTCGTTGAAAGCTTGCAAGTACAAATCTACTATTCTCAGATTGGAGTTAGAATTTGTAATTGGGTTTTCAAAGGATCTGTTCATCGGCTGTTCATTCGACGCGGAAGCCAAGAAATCCAGGAACATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCTAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTCAGGTCGATAAAGTTCGAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATTTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCTTTGTCAATCTCTCAGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAGGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAATTGGCGGCGGCGCTGAAACGGTTGAGCCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTGGTAGTGTGAAGAAACGTATCTCAGTTACTTCCTAATTGTCATTTGGTTTGGATTTTGTTTTCCTCTAAATGATAATAGTGCATTAGGTTGGTGATGGCTTTGAGCTTACTGATAAATGTTTATTTTCTAACTATGAAATGAACTTCTTGGCCCTCCTATGGGATTTTTTTCTGGAGGAAGTTCTGTTTTGTTGATTGAATCAATAAATAAATTAGAGTTGCATTTGTATTATTTCCCTTGTATTATGTGAATTCTACTTAGATAATTTCAGTATGTGGAGTAGGTTCACTATCAAATATTCGATGGCAATATTGTGGTTATAGTGAATTTGCACATGAAACCACATGCACTATGAAAAACTTAATGCGTAGAGATTTTGTATATTTTATCAAATAATTTACTTAATGCATAGAGATTTATGTATTTTATCAAATAATTTTTCGTTTTTTTACTGCAGAGAGTGTTTGTAGCTATTGTCGTTTGTCTGCCTTAGGACTTTTCAGGC

Coding sequence (CDS)

ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCTAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTCAGGTCGATAAAGTTCGAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATTTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCTTTGTCAATCTCTCAGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAGGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAATTGGCGGCGGCGCTGAAACGGTTGAGCCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

Protein sequence

MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR*

Homology

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BLAST of MELO3C018951 vs. Swiss-Prot
Match: RL23_METCA (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=rplW PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.1e-07
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 30 EIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLR 89
          +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

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BLAST of MELO3C018951 vs. Swiss-Prot
Match: RL23_HAES1 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) GN=rplW PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.0e-07
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 1


Query: 26 TNITE----IALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDY 85
          TN TE    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 86 KKAYVTLRNPLSI 95
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

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BLAST of MELO3C018951 vs. Swiss-Prot
Match: RL23_AGGAC (50S ribosomal protein L23 OS=Aggregatibacter actinomycetemcomitans GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 1


Query: 31 IALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRN 90
          I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+ 
Sbjct: 29 IVFKVALDANKVEITNAVEQLFEVKVDSVRTVVVKGKTKRRGAKIGRRSDWKKAYVTLQE 88

Query: 91 PLSI 95
            S+
Sbjct: 89 GQSL 92

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BLAST of MELO3C018951 vs. Swiss-Prot
Match: RL23_ALKEH (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 30 EIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTL 89
          E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G +   +PD+KKAYVTL
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTL 86

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BLAST of MELO3C018951 vs. Swiss-Prot
Match: RL23_HALHL (50S ribosomal protein L23 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1


Query: 30 EIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTL 89
          ++  +  P A+K EIK  +E L+  QV  VRT+N +GK+K+ G I   + D+KKAYVTL
Sbjct: 28 QVVFQVAPDANKKEIKAAVEKLFDVQVTGVRTVNAKGKRKRFGMIRGRRRDWKKAYVTL 86

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BLAST of MELO3C018951 vs. TrEMBL
Match: A0A0A0L0J2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 2.7e-90
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

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BLAST of MELO3C018951 vs. TrEMBL
Match: A5BVA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012657 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.0e-65
Identity = 129/174 (74.14%), Postives = 147/174 (84.48%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRV++F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGF+V+KVR
Sbjct: 310 MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 369

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAY+TL+NPLSIS D+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 370 TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 429

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK HWL  K+    +  K  A+RGR   GG A     + KFPWS MR+ R
Sbjct: 430 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAAA---AAKFPWSGMRASR 480

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BLAST of MELO3C018951 vs. TrEMBL
Match: D7T5V5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0742g00020 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.9e-65
Identity = 129/174 (74.14%), Postives = 147/174 (84.48%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRV++F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGF+V+KVR
Sbjct: 1   MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAY+TL+NPLSIS D+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK HWL  K+    +  K  A+RGR   GG A     + KFPWS MR+ R
Sbjct: 121 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAA----AAAKFPWSGMRASR 170

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BLAST of MELO3C018951 vs. TrEMBL
Match: A0A067LED8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.1e-64
Identity = 133/172 (77.33%), Postives = 148/172 (86.05%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVV+FANLPIKLLMPT+FTNI EIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 1   MGSRLGRRVVNFANLPIKLLMPTTFTNIREIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGIL+AKPDYKKAYVTLRNPLS+S D+YP+RIIEE+K  MNKQ +SSIV
Sbjct: 61  TLNMEGKKKKRGGILLAKPDYKKAYVTLRNPLSVSPDLYPLRIIEEEKERMNKQRRSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRS 173
           E+GE K+HWL  K+   + + KG   R R R G G  TVE + KFPWSSMRS
Sbjct: 121 EDGEGKKHWLDGKKEERVGSEKG---RRRDRGGVGDFTVE-NAKFPWSSMRS 168

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BLAST of MELO3C018951 vs. TrEMBL
Match: A0A059AL68_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 9.7e-64
Identity = 130/174 (74.71%), Postives = 146/174 (83.91%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+L+AKPDYKKAYVTLR+PLS+S D++PIR++EED+R+ NK+  SS+V
Sbjct: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRSPLSVSPDLFPIRVVEEDRRSANKKGGSSMV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGE KRHWL  +E    K  K F +R R   G GA       KFPWS M+SGR
Sbjct: 121 EEGERKRHWLDGEERERRKREKEFGERVRG--GSGA-------KFPWSFMKSGR 165

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BLAST of MELO3C018951 vs. TAIR10
Match: AT4G39880.1 (AT4G39880.1 Ribosomal protein L23/L15e family protein)

HSP 1 Score: 210.7 bits (535), Expect = 7.3e-55
Identity = 114/175 (65.14%), Postives = 128/175 (73.14%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGG+LIAK DYKKAYVTLR+PLSIS+D++P++ IEED+++  K S S + 
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGS-SFVE 120

Query: 121 EEGEAKRHWLHEKEPVGIKTY-KGFADRGRRRIGG---GAETVEPSTKFPWSSMR 172
           EE + K HWL  KE   I  Y KG   RG  R      G      + KFPWS+MR
Sbjct: 121 EEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

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BLAST of MELO3C018951 vs. NCBI nr
Match: gi|659111130|ref|XP_008455593.1| (PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo])

HSP 1 Score: 347.8 bits (891), Expect = 1.1e-92
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of MELO3C018951 vs. NCBI nr
Match: gi|449438835|ref|XP_004137193.1| (PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus])

HSP 1 Score: 339.3 bits (869), Expect = 3.9e-90
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of MELO3C018951 vs. NCBI nr
Match: gi|147784232|emb|CAN63891.1| (hypothetical protein VITISV_012657 [Vitis vinifera])

HSP 1 Score: 256.1 bits (653), Expect = 4.3e-65
Identity = 129/174 (74.14%), Postives = 147/174 (84.48%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRV++F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGF+V+KVR
Sbjct: 310 MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 369

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAY+TL+NPLSIS D+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 370 TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 429

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK HWL  K+    +  K  A+RGR   GG A     + KFPWS MR+ R
Sbjct: 430 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAAA---AAKFPWSGMRASR 480

[Close]

BLAST of MELO3C018951 vs. NCBI nr
Match: gi|731438556|ref|XP_010647317.1| (PREDICTED: uncharacterized protein LOC100245960 isoform X2 [Vitis vinifera])

HSP 1 Score: 255.8 bits (652), Expect = 5.6e-65
Identity = 129/174 (74.14%), Postives = 147/174 (84.48%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRV++F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGF+V+KVR
Sbjct: 1   MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAY+TL+NPLSIS D+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK HWL  K+    +  K  A+RGR   GG A     + KFPWS MR+ R
Sbjct: 121 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAA----AAAKFPWSGMRASR 170

[Close]

BLAST of MELO3C018951 vs. NCBI nr
Match: gi|802537037|ref|XP_012089859.1| (PREDICTED: uncharacterized protein LOC105648139 [Jatropha curcas])

HSP 1 Score: 254.2 bits (648), Expect = 1.6e-64
Identity = 133/172 (77.33%), Postives = 148/172 (86.05%), Query Frame = 1


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVV+FANLPIKLLMPT+FTNI EIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 1   MGSRLGRRVVNFANLPIKLLMPTTFTNIREIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGIL+AKPDYKKAYVTLRNPLS+S D+YP+RIIEE+K  MNKQ +SSIV
Sbjct: 61  TLNMEGKKKKRGGILLAKPDYKKAYVTLRNPLSVSPDLYPLRIIEEEKERMNKQRRSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRS 173
           E+GE K+HWL  K+   + + KG   R R R G G  TVE + KFPWSSMRS
Sbjct: 121 EDGEGKKHWLDGKKEERVGSEKG---RRRDRGGVGDFTVE-NAKFPWSSMRS 168

The following BLAST results are available for this feature:

BLAST of MELO3C018951 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL23_METCA	4.1e-07	41.67	50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
RL23_HAES1	7.0e-07	42.47	50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) GN=rplW PE=3 SV=1	[more]
RL23_AGGAC	1.6e-06	42.19	50S ribosomal protein L23 OS=Aggregatibacter actinomycetemcomitans GN=rplW PE=3 ...	[more]
RL23_ALKEH	1.6e-06	44.07	50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D...	[more]
RL23_HALHL	1.6e-06	45.76	50S ribosomal protein L23 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=...	[more]

BLAST of MELO3C018951 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0J2_CUCSA	2.7e-90	97.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1	[more]
A5BVA7_VITVI	3.0e-65	74.14	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012657 PE=4 SV=1	[more]
D7T5V5_VITVI	3.9e-65	74.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0742g00020 PE=4 SV=...	[more]
A0A067LED8_JATCU	1.1e-64	77.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1	[more]
A0A059AL68_EUCGR	9.7e-64	74.71	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1	[more]

BLAST of MELO3C018951 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39880.1	7.3e-55	65.14	Ribosomal protein L23/L15e family protein	[more]

BLAST of MELO3C018951 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111130\|ref\|XP_008455593.1\|	1.1e-92	100.00	PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo]	[more]
gi\|449438835\|ref\|XP_004137193.1\|	3.9e-90	97.13	PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus]	[more]
gi\|147784232\|emb\|CAN63891.1\|	4.3e-65	74.14	hypothetical protein VITISV_012657 [Vitis vinifera]	[more]
gi\|731438556\|ref\|XP_010647317.1\|	5.6e-65	74.14	PREDICTED: uncharacterized protein LOC100245960 isoform X2 [Vitis vinifera]	[more]
gi\|802537037\|ref\|XP_012089859.1\|	1.6e-64	77.33	PREDICTED: uncharacterized protein LOC105648139 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR013025	Ribosomal_L25/23
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR013025	Ribosomal_L25/23

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003735	structural constituent of ribosome
GO:0000166	nucleotide binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0015992	proton transport
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0034654	nucleobase-containing compound biosynthetic process
biological_process	GO:0044699	single-organism process
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005351	sugar:proton symporter activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47267	melon EST collection version 4.0	transcribed_cluster
MU51848	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018951T1	MELO3C018951T1	mRNA
MELO3C018951T2	MELO3C018951T2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU47267	MU47267	transcribed_cluster
MU51848	MU51848	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 30..94 score: 1.2
IPR012678	Ribosomal protein L23/L15e core domain	unknown	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 26..94 score: 7.91
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 30..90 score: 1.0
None	No IPR available	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 5..172 score: 4.2
None	No IPR available	PANTHER	PTHR12059:SF5	39S RIBOSOMAL PROTEIN L23, MITOCHONDRIAL	coord: 5..172 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018951	Csa4G095560	Cucumber (Chinese Long) v2	cumeB303
MELO3C018951	Cla004827	Watermelon (97103) v1	mewmB494
MELO3C018951	ClCG10G009000	Watermelon (Charleston Gray)	mewcgB456
MELO3C018951	Cla97C10G192200	Watermelon (97103) v2	mewmbB466
MELO3C018951	Bhi11G000833	Wax gourd	mewgoB566
MELO3C018951	CSPI04G08650	Wild cucumber (PI 183967)	cpimeB298
MELO3C018951	Cucsa.273070	Cucumber (Gy14) v1	cgymeB457
MELO3C018951	CmaCh04G008240	Cucurbita maxima (Rimu)	cmameB698
MELO3C018951	CmoCh04G008810	Cucurbita moschata (Rifu)	cmomeB690
MELO3C018951	CmoCh16G007660	Cucurbita moschata (Rifu)	cmomeB297
MELO3C018951	CsGy4G008480	Cucumber (Gy14) v2	cgybmeB259
MELO3C018951	Carg05824	Silver-seed gourd	carmeB0993
MELO3C018951	Carg14224	Silver-seed gourd	carmeB0925
MELO3C018951	CsaV3_4G008860	Cucumber (Chinese Long) v3	cucmeB304

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018951	Cucurbita maxima (Rimu)	cmameB302
MELO3C018951	Cucurbita pepo (Zucchini)	cpemeB421
MELO3C018951	Bottle gourd (USVL1VR-Ls)	lsimeB273