Cla004827 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004827
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	50S ribosomal protein L23 (AHRD V1 -- F5SWV4_9GAMM); contains Interpro domain(s) IPR012678 Ribosomal protein L23/L15e, core
Location	Chr10 : 11150409 .. 11150930 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCATCTGCTTCCAAAATCGAAATTAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAGGAGCCTGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAACTGACGGTGCTGAAACCGTTGAACCATCGACTAAGTTTCCCTGGAGTAGCATGAGGTCTGGTAGGTAG

mRNA sequence

ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCATCTGCTTCCAAAATCGAAATTAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAGGAGCCTGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAACTGACGGTGCTGAAACCGTTGAACCATCGACTAAGTTTCCCTGGAGTAGCATGAGGTCTGGTAGGTAG

Coding sequence (CDS)

ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCATCTGCTTCCAAAATCGAAATTAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAGGAGCCTGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAACTGACGGTGCTGAAACCGTTGAACCATCGACTAAGTTTCCCTGGAGTAGCATGAGGTCTGGTAGGTAG

Protein sequence

MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR

Homology

[Close]

BLAST of Cla004827 vs. Swiss-Prot
Match: RL23_METCA (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=rplW PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-07
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 89
          +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

[Close]

BLAST of Cla004827 vs. Swiss-Prot
Match: RL23_HAES1 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) GN=rplW PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.3e-07
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 1


Query: 26 TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 85
          TN TE    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 86 KKAYVTLRNPLSI 95
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

[Close]

BLAST of Cla004827 vs. Swiss-Prot
Match: RL23_AERHH (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240) GN=rplW PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.9e-07
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 1


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of Cla004827 vs. Swiss-Prot
Match: RL23_AERS4 (50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) GN=rplW PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.0e-07
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 1


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of Cla004827 vs. Swiss-Prot
Match: RL23_ALKEH (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=rplW PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.0e-07
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 89
          E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G L   +PD+KKAYVTL
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTL 86

[Close]

BLAST of Cla004827 vs. TrEMBL
Match: A0A0A0L0J2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 5.6e-88
Identity = 165/174 (94.83%), Postives = 172/174 (98.85%), Query Frame = 1


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRT-DGAETVEPSTKFPWSSMRSGR 174
           EEGEAK+HWLHEKEPVG+KTYKGFADRGRRR+  GAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Cla004827 vs. TrEMBL
Match: A5BVA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012657 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.7e-66
Identity = 132/173 (76.30%), Postives = 147/173 (84.97%), Query Frame = 1


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVI+F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVR
Sbjct: 310 MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 369

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 370 TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 429

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR 174
           EEGEAK HWL  K+    +  K  A+RGR    GA     + KFPWS MR+ R
Sbjct: 430 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAAA--AAKFPWSGMRASR 480

[Close]

BLAST of Cla004827 vs. TrEMBL
Match: D7T5V5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0742g00020 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.5e-66
Identity = 132/173 (76.30%), Postives = 147/173 (84.97%), Query Frame = 1


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVI+F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVR
Sbjct: 1   MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR 174
           EEGEAK HWL  K+    +  K  A+RGR    GA     + KFPWS MR+ R
Sbjct: 121 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAA---AAKFPWSGMRASR 170

[Close]

BLAST of Cla004827 vs. TrEMBL
Match: A0A067LED8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 132/174 (75.86%), Postives = 149/174 (85.63%), Query Frame = 1


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV++FANLPIKLLMPT+FTNI EIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVNFANLPIKLLMPTTFTNIREIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+L+AKPDYKKAYVTLRNPLS+SPD+YP+RIIEE+K  MNKQ +SSIV
Sbjct: 61  TLNMEGKKKKRGGILLAKPDYKKAYVTLRNPLSVSPDLYPLRIIEEEKERMNKQRRSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAE---TVEPSTKFPWSSMRS 172
           E+GE K+HWL      G K  +  +++GRRR  G     TVE + KFPWSSMRS
Sbjct: 121 EDGEGKKHWLD-----GKKEERVGSEKGRRRDRGGVGDFTVE-NAKFPWSSMRS 168

[Close]

BLAST of Cla004827 vs. TrEMBL
Match: A0A059AL68_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 129/173 (74.57%), Postives = 145/173 (83.82%), Query Frame = 1


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGLL+AKPDYKKAYVTLR+PLS+SPD++PIR++EED+R+ NK+  SS+V
Sbjct: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRSPLSVSPDLFPIRVVEEDRRSANKKGGSSMV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR 174
           EEGE KRHWL  +E    K  K F +R R  +          KFPWS M+SGR
Sbjct: 121 EEGERKRHWLDGEERERRKREKEFGERVRGGS--------GAKFPWSFMKSGR 165

[Close]

BLAST of Cla004827 vs. NCBI nr
Match: gi|449438835|ref|XP_004137193.1| (PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 8.0e-88
Identity = 165/174 (94.83%), Postives = 172/174 (98.85%), Query Frame = 1


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRT-DGAETVEPSTKFPWSSMRSGR 174
           EEGEAK+HWLHEKEPVG+KTYKGFADRGRRR+  GAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Cla004827 vs. NCBI nr
Match: gi|659111130|ref|XP_008455593.1| (PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo])

HSP 1 Score: 329.3 bits (843), Expect = 4.0e-87
Identity = 165/174 (94.83%), Postives = 170/174 (97.70%), Query Frame = 1


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRT-DGAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPVG+KTYKGFADRGRRR   GAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Cla004827 vs. NCBI nr
Match: gi|147784232|emb|CAN63891.1| (hypothetical protein VITISV_012657 [Vitis vinifera])

HSP 1 Score: 259.6 bits (662), Expect = 3.9e-66
Identity = 132/173 (76.30%), Postives = 147/173 (84.97%), Query Frame = 1


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVI+F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVR
Sbjct: 310 MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 369

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 370 TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 429

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR 174
           EEGEAK HWL  K+    +  K  A+RGR    GA     + KFPWS MR+ R
Sbjct: 430 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAAA--AAKFPWSGMRASR 480

[Close]

BLAST of Cla004827 vs. NCBI nr
Match: gi|731438556|ref|XP_010647317.1| (PREDICTED: uncharacterized protein LOC100245960 isoform X2 [Vitis vinifera])

HSP 1 Score: 259.2 bits (661), Expect = 5.0e-66
Identity = 132/173 (76.30%), Postives = 147/173 (84.97%), Query Frame = 1


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVI+F NLPIKLLMP+SFTNI EIALKT+PSASKIEIKRVLESLYGFEV+KVR
Sbjct: 1   MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAY+TL+NPLSISPD+YPIR+IEE+K+N NKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR 174
           EEGEAK HWL  K+    +  K  A+RGR    GA     + KFPWS MR+ R
Sbjct: 121 EEGEAKSHWLDGKDGDRFRPEKSSAERGRGGRGGAAA---AAKFPWSGMRASR 170

[Close]

BLAST of Cla004827 vs. NCBI nr
Match: gi|1009145987|ref|XP_015890638.1| (PREDICTED: uncharacterized protein LOC107425195 [Ziziphus jujuba])

HSP 1 Score: 257.7 bits (657), Expect = 1.5e-65
Identity = 133/173 (76.88%), Postives = 142/173 (82.08%), Query Frame = 1


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RV++FAN+PIKLLMP SFTNITEIALKTIPSASKIEIKRVLESLYGFEV+KVR
Sbjct: 1   MGSRLGSRVVYFANIPIKLLMPNSFTNITEIALKTIPSASKIEIKRVLESLYGFEVEKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTL+NPLSISPD+YPIRIIEEDKR MNKQ KSS+V
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLKNPLSISPDLYPIRIIEEDKRQMNKQPKSSMV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGR 174
           EEGE KRHWL  KE    K  KG  +R           E   KFPWSSMR  R
Sbjct: 121 EEGEVKRHWLDGKESQRFKPEKGSGNR----------AESGAKFPWSSMRPAR 163

The following BLAST results are available for this feature:

BLAST of Cla004827 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL23_METCA	4.0e-07	41.67	50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
RL23_HAES1	5.3e-07	42.47	50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) GN=rplW PE=3 SV=1	[more]
RL23_AERHH	6.9e-07	45.76	50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC...	[more]
RL23_AERS4	9.0e-07	45.76	50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) GN=rplW PE=3 SV...	[more]
RL23_ALKEH	9.0e-07	45.76	50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D...	[more]

BLAST of Cla004827 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0J2_CUCSA	5.6e-88	94.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095560 PE=4 SV=1	[more]
A5BVA7_VITVI	2.7e-66	76.30	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012657 PE=4 SV=1	[more]
D7T5V5_VITVI	3.5e-66	76.30	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0742g00020 PE=4 SV=...	[more]
A0A067LED8_JATCU	1.5e-64	75.86	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24040 PE=4 SV=1	[more]
A0A059AL68_EUCGR	1.5e-64	74.57	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00432 PE=4 SV=1	[more]

BLAST of Cla004827 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438835\|ref\|XP_004137193.1\|	8.0e-88	94.83	PREDICTED: uncharacterized protein LOC101221365 [Cucumis sativus]	[more]
gi\|659111130\|ref\|XP_008455593.1\|	4.0e-87	94.83	PREDICTED: 50S ribosomal protein L23, chloroplastic [Cucumis melo]	[more]
gi\|147784232\|emb\|CAN63891.1\|	3.9e-66	76.30	hypothetical protein VITISV_012657 [Vitis vinifera]	[more]
gi\|731438556\|ref\|XP_010647317.1\|	5.0e-66	76.30	PREDICTED: uncharacterized protein LOC100245960 isoform X2 [Vitis vinifera]	[more]
gi\|1009145987\|ref\|XP_015890638.1\|	1.5e-65	76.88	PREDICTED: uncharacterized protein LOC107425195 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR013025	Ribosomal_L25/23

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:0015992	proton transport
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport
biological_process	GO:0034654	nucleobase-containing compound biosynthetic process
biological_process	GO:0044699	single-organism process
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005622	intracellular
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0005351	sugar:proton symporter activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004827	Cla004827.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 30..94 score: 2.3
IPR012678	Ribosomal protein L23/L15e core domain	unknown	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 9..94 score: 5.76
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 30..90 score: 1.6
None	No IPR available	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 5..171 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004827	Cla97C10G192200	Watermelon (97103) v2	wmwmbB059
Cla004827	Csa4G095560	Cucumber (Chinese Long) v2	cuwmB294
Cla004827	MELO3C018951	Melon (DHL92) v3.5.1	mewmB494
Cla004827	ClCG10G009000	Watermelon (Charleston Gray)	wcgwmB059
Cla004827	CSPI04G08650	Wild cucumber (PI 183967)	cpiwmB295
Cla004827	Cucsa.273070	Cucumber (Gy14) v1	cgywmB502
Cla004827	CmaCh04G008240	Cucurbita maxima (Rimu)	cmawmB654
Cla004827	CmoCh16G007660	Cucurbita moschata (Rifu)	cmowmB290
Cla004827	CmoCh04G008810	Cucurbita moschata (Rifu)	cmowmB649
Cla004827	Cp4.1LG14g01280	Cucurbita pepo (Zucchini)	cpewmB206
Cla004827	CsGy4G008480	Cucumber (Gy14) v2	cgybwmB271
Cla004827	MELO3C018951.2	Melon (DHL92) v3.6.1	medwmB481
Cla004827	Carg14224	Silver-seed gourd	carwmB0939
Cla004827	Carg05824	Silver-seed gourd	carwmB1015
Cla004827	CsaV3_4G008860	Cucumber (Chinese Long) v3	cucwmB303
Cla004827	Bhi11G000833	Wax gourd	wgowmB029

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004827	Cucurbita maxima (Rimu)	cmawmB296
Cla004827	Cucurbita pepo (Zucchini)	cpewmB383
Cla004827	Bottle gourd (USVL1VR-Ls)	lsiwmB241
Cla004827	Silver-seed gourd	carwmB1017